IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1433	 57.58	+1	1331466..1331927	+	153	119872953	-	Pisl_1461	-	hypothetical protein
1434	 55.92	0	1331984..1333249	+	421	119872954	-	Pisl_1462	-	transposase, IS605 OrfB
1435	 65.67	+2	1333418..1334218	+	266	119872955	-	Pisl_1463	-	radical SAM domain-containing protein
1436	 59.25	+1	1334161..1335144	-	327	119872956	-	Pisl_1464	-	hypothetical protein
1437	 66.67	+2	1335186..1336565	-	459	119872957	-	Pisl_1465	-	hypothetical protein
1438	 63.28	+1	1336620..1337831	+	403	119872958	-	Pisl_1466	-	glycosyl transferase, group 1
1439	 54.91	0	1337828..1338601	+	257	119872959	-	Pisl_1467	-	hypothetical protein
1440	 53.33	0	1338602..1339531	-	309	119872960	-	Pisl_1468	-	glycosyl transferase family protein
1441	 64.56	+2	1339550..1340071	-	173	119872961	-	Pisl_1469	-	FkbM family methyltransferase
1442	 66.80	+2	1340318..1341088	+	256	119872962	-	Pisl_1470	-	hypothetical protein
1443	 58.72	+1	1341090..1342196	+	368	119872963	-	Pisl_1471	-	ATPase-like protein
1444	 60.61	+1	1342714..1343043	+	109	119872964	-	Pisl_1472	-	hypothetical protein
1445	 48.51	0	1343036..1343437	+	133	119872965	-	Pisl_1473	-	hypothetical protein
1446	 59.61	+1	1343733..1344299	+	188	119872966	-	Pisl_1474	-	PaREP1 domain-containing protein
1447	 58.42	+1	1344601..1344879	+	92	119872967	-	Pisl_1475	-	hypothetical protein
1448	 56.79	+1	1344870..1345112	+	80	119872968	-	Pisl_1476	-	DNA polymerase beta subunit
1449	 43.93	0	1345799..1346440	+	213	119872969	-	Pisl_1477	-	hypothetical protein
1450	 53.25	0	1346448..1346909	+	153	119872970	-	Pisl_1478	-	hypothetical protein
1451	 31.10	-2	1346906..1347487	+	193	119872971	-	Pisl_1479	-	hypothetical protein
1452	 53.26	0	1348339..1349427	-	362	119872972	-	Pisl_1480	-	IS605 family transposase OrfB
1453	 56.26	+1	1349864..1350286	+	140	119872973	-	Pisl_1481	-	hypothetical protein
1454	 57.92	+1	1350441..1350920	+	159	119872974	-	Pisl_1482	-	hypothetical protein
1455	 52.22	0	1351043..1351492	+	149	119872975	-	Pisl_1483	-	hypothetical protein
1456	 55.68	0	1351495..1352313	+	272	119872976	-	Pisl_1484	-	hypothetical protein
1457	 64.08	+2	1352560..1353138	-	192	119872977	-	Pisl_1485	-	hypothetical protein
1458	 61.25	+1	1353425..1353793	-	122	119872978	-	Pisl_1486	-	hypothetical protein
1459	 56.10	0	1353944..1354975	+	343	119872979	-	Pisl_1487	-	hypothetical protein
1460	 51.06	0	1354975..1355538	+	187	119872980	-	Pisl_1488	-	hypothetical protein
1461	 62.19	+1	1357151..1357843	+	230	119872981	-	Pisl_1489	-	nucleotidyl transferase
1462	 59.02	+1	1357840..1359081	+	413	119872982	-	Pisl_1490	-	NAD-dependent epimerase/dehydratase
1463	 27.49	-2	1359074..1360099	+	341	119872983	-	Pisl_1491	-	FkbM family methyltransferase
1464	 36.78	-1	1360077..1361264	+	395	119872984	-	Pisl_1492	-	glycosyl transferase, group 1
1465	 63.79	+2	1361268..1361684	+	138	119872985	-	Pisl_1493	-	hypothetical protein
1466	 64.09	+2	1361669..1362601	+	310	119872986	-	Pisl_1494	-	glycosyl transferase family protein
1467	 50.46	0	1362598..1363683	+	361	119872987	-	Pisl_1495	-	glycosyl transferase, group 1
1468	 51.69	0	1363665..1364759	+	364	119872988	-	Pisl_1496	-	glycosyl transferase, group 1
1469	 44.82	0	1364749..1365915	+	388	119872989	-	Pisl_1497	-	glycosyl transferase, group 1
1470	 42.33	0	1365893..1368436	+	847	119872990	-	Pisl_1498	-	hypothetical protein
1471	 55.65	0	1368528..1369643	+	371	119872991	-	Pisl_1499	-	glycosyl transferase, group 1
1472	 57.33	+1	1369648..1369872	+	74	119872992	-	Pisl_1500	-	hypothetical protein
1473	 59.01	+1	1369881..1370363	+	160	119872993	-	Pisl_1501	-	hypothetical protein
1474	 58.93	+1	1370391..1371359	+	322	119872994	-	Pisl_1502	-	hypothetical protein
1475	 59.22	+1	1371538..1372356	+	272	119872995	-	Pisl_1503	-	nucleotidyl transferase
1476	 61.82	+1	1372325..1373293	+	322	119872996	-	Pisl_1504	-	NAD-dependent epimerase/dehydratase
1477	 64.31	+2	1373272..1374546	+	424	119872997	-	Pisl_1505	-	UDP-glucose 6-dehydrogenase
1478	 54.51	0	1374604..1375911	+	435	119872998	-	Pisl_1506	-	sulfatase
1479	 55.38	0	1376110..1376295	+	61	119872999	-	Pisl_1507	-	hypothetical protein
1480	 57.63	+1	1376341..1377048	+	235	119873000	-	Pisl_1508	-	hypothetical protein
1481	 56.01	0	1376981..1377571	-	196	119873001	-	Pisl_1509	-	adenylyl-sulfate kinase
1482	 55.06	0	1377559..1378833	-	424	119873002	-	Pisl_1510	-	type I phosphodiesterase/nucleotide pyrophosphatase
1483	 59.22	+1	1378905..1380233	+	442	119873003	sat	Pisl_1511	-	sulfate adenylyltransferase
1484	 55.85	0	1380230..1380571	+	113	119873004	-	Pisl_1512	-	hypothetical protein
1485	 56.32	+1	1380898..1381245	+	115	119873005	-	Pisl_1513	-	paREP15, putative coiled-coil protein
1486	 61.73	+1	1381356..1381922	+	188	119873006	-	Pisl_1514	-	PaREP1 domain-containing protein
1487	 58.17	+1	1382577..1383176	-	199	119873007	-	Pisl_1516	-	hypothetical protein
1488	 62.06	+1	1383195..1384865	+	556	119873008	-	Pisl_1517	-	hypothetical protein
1489	 52.41	0	1384872..1385411	+	179	119873009	-	Pisl_1518	-	hypothetical protein
1490	 46.45	0	1385809..1386441	-	210	119873010	-	Pisl_1519	-	phosphate uptake regulator, PhoU
1491	 49.08	0	1386464..1387168	-	234	119873011	-	Pisl_1520	-	ABC transporter related
1492	 53.09	0	1387159..1387887	-	242	119873012	-	Pisl_1521	-	ABC transporter related
1493	 55.80	0	1387884..1388849	-	321	119873013	-	Pisl_1522	-	inner-membrane translocator
1494	 54.00	0	1388846..1389721	-	291	119873014	-	Pisl_1523	-	inner-membrane translocator
1495	 58.55	+1	1389721..1391100	-	459	119873015	-	Pisl_1524	-	extracellular ligand-binding receptor
1496	 57.37	+1	1391272..1392024	-	250	119873016	-	Pisl_1525	-	ABC transporter related
1497	 60.34	+1	1392029..1392913	-	294	119873017	-	Pisl_1526	-	binding-protein-dependent transport systems inner membrane component
1498	 61.69	+1	1392910..1393833	-	307	119873018	-	Pisl_1527	-	phosphate ABC transporter, inner membrane subunit PstC
1499	 59.76	+1	1393917..1395161	-	414	119873019	-	Pisl_1528	-	phosphate ABC transporter, periplasmic phosphate-binding protein
1500	 61.28	+1	1395324..1396121	+	265	119873020	-	Pisl_1529	-	short-chain dehydrogenase/reductase SDR
1501	 55.07	0	1396125..1397366	-	413	119873021	-	Pisl_1530	-	IS605 family transposase OrfB
1502	 54.96	0	1397755..1398540	+	261	119873022	-	Pisl_1531	-	hypothetical protein
1503	 54.17	0	1398506..1398913	-	135	119873023	-	Pisl_1532	-	hypothetical protein
1504	 57.73	+1	1398901..1399314	-	137	119873024	-	Pisl_1533	-	hypothetical protein
1505	 61.44	+1	1399884..1400189	+	101	119873025	-	Pisl_1534	-	hypothetical protein
1506	 63.77	+2	1400213..1400557	+	114	119873026	-	Pisl_1535	-	paREP11
1507	 50.48	0	1400860..1401273	-	137	119873027	-	Pisl_1536	-	PilT domain-containing protein
1508	 49.35	0	1401260..1401490	-	76	119873028	-	Pisl_1537	-	hypothetical protein
1509	 60.67	+1	1402072..1402371	+	99	119873029	-	Pisl_1538	-	hypothetical protein
1510	 45.66	0	1402368..1402805	+	145	119873030	-	Pisl_1539	-	hypothetical protein
1511	 63.73	+2	1403392..1403766	-	124	119873031	-	Pisl_1540	-	paREP9
1512	 48.14	0	1405105..1408203	-	1032	119873032	-	Pisl_1541	-	HD superfamily hydrolase
1513	 51.41	0	1408191..1409219	-	342	119873033	-	Pisl_1542	-	CRISPR-associated RAMP Csm5 family protein
1514	 54.40	0	1409209..1410162	-	317	119873034	-	Pisl_1543	-	hypothetical protein
1515	 45.96	0	1410159..1411148	-	329	119873035	-	Pisl_1544	-	CRISPR-associated RAMP Csm3 family protein
1516	 38.36	-1	1411138..1411773	-	211	119873036	-	Pisl_1545	-	hypothetical protein
1517	 55.16	0	1411984..1412400	+	138	119873037	-	Pisl_1546	-	hypothetical protein
1518	 62.02	+1	1412798..1413700	+	300	119873038	-	Pisl_1547	-	hypothetical protein
1519	 47.48	0	1415462..1417864	+	800	119873039	-	Pisl_1548	-	ATPase domain-containing protein
1520	 40.88	-1	1417857..1418585	+	242	119873040	-	Pisl_1549	-	hypothetical protein
1521	 45.00	0	1418820..1419059	-	79	119873041	-	Pisl_1550	-	hypothetical protein
1522	 46.94	0	1419133..1419867	-	244	119873042	-	Pisl_1551	-	hypothetical protein
1523	 55.10	0	1419861..1420517	-	218	119873043	-	Pisl_1552	-	hypothetical protein
1524	 66.67	+2	1422076..1422516	-	146	119873044	-	Pisl_1554	-	phosphohistidine phosphatase, SixA
1525	 57.23	+1	1422728..1423405	-	225	119873045	-	Pisl_1555	-	methyltransferase small
1526	 61.59	+1	1423451..1423765	+	104	119873046	-	Pisl_1556	-	hypothetical protein
1527	 49.95	0	1423731..1424645	-	304	119873047	-	Pisl_1557	-	hypothetical protein
1528	 58.43	+1	1424738..1425004	+	88	119873048	-	Pisl_1558	-	hypothetical protein
1529	 44.92	0	1425466..1425819	-	117	119873049	-	Pisl_1559	-	hypothetical protein
1530	 48.64	0	1425850..1426143	-	97	119873050	-	Pisl_1560	-	hypothetical protein
1531	 56.74	+1	1426184..1426717	-	177	119873051	-	Pisl_1561	-	nicotinamide-nucleotide adenylyltransferase
1532	 51.84	0	1426714..1428177	-	487	119873052	pheS	Pisl_1562	-	phenylalanyl-tRNA synthetase subunit alpha
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.