IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1381	 57.89	+1	1274499..1274897	+	132	119872901	-	Pisl_1406	-	hypothetical protein
1382	 58.96	+1	1274894..1278397	+	1167	119872902	-	Pisl_1407	-	hypothetical protein
1383	 69.28	+2	1278489..1278794	-	101	119872903	-	Pisl_1408	-	hypothetical protein
1384	 63.61	+2	1278804..1279949	+	381	119872904	-	Pisl_1409	-	hypothetical protein
1385	 55.17	0	1280004..1280264	+	86	119872905	-	Pisl_1410	-	hypothetical protein
1386	 62.39	+1	1281223..1282227	+	334	119872906	-	Pisl_1412	-	peptidase S1 and S6, chymotrypsin/Hap
1387	 58.18	+1	1282498..1283946	+	482	119872907	-	Pisl_1413	-	hypothetical protein
1388	 54.60	0	1283927..1285177	-	416	119872908	-	Pisl_1414	-	transposase, IS605 OrfB
1389	 53.70	0	1285503..1285826	+	107	119872909	-	Pisl_1415	-	hypothetical protein
1390	 69.47	+2	1285889..1286281	+	130	119872910	-	Pisl_1416	-	hypothetical protein
1391	 51.73	0	1286350..1286811	+	153	119872911	-	Pisl_1417	-	hypothetical protein
1392	 60.72	+1	1287075..1288133	+	352	119872912	-	Pisl_1418	-	uncharacterized linocin/CFP29-like protein
1393	 60.75	+1	1288215..1289567	-	450	119872913	-	Pisl_1419	-	phosphomethylpyrimidine kinase
1394	 50.82	0	1289584..1290315	-	243	119872914	-	Pisl_1420	-	5-formyltetrahydrofolate cyclo-ligase
1395	 46.53	0	1290308..1291027	-	239	119872915	-	Pisl_1421	-	hypothetical protein
1396	 52.99	0	1292908..1293426	+	172	119872916	-	Pisl_1423	-	hypothetical protein
1397	 59.33	+1	1293410..1293859	+	149	119872917	-	Pisl_1424	-	hypothetical protein
1398	 42.94	0	1294531..1294707	+	58	119872918	-	Pisl_1425	-	paREP4
1399	 43.84	0	1294733..1295008	+	91	119872919	-	Pisl_1426	-	ArsR family transcriptional regulator
1400	 48.95	0	1295014..1295346	-	110	119872920	-	Pisl_1427	-	hypothetical protein
1401	 54.44	0	1295353..1295622	-	89	119872921	-	Pisl_1428	-	hypothetical protein
1402	 56.87	+1	1295960..1296490	-	176	119872922	-	Pisl_1429	-	NUDIX hydrolase
1403	 58.88	+1	1296814..1297365	-	183	119872923	-	Pisl_1430	-	PaREP1 domain-containing protein
1404	 43.17	0	1297935..1298930	-	331	119872924	-	Pisl_1431	-	MscS mechanosensitive ion channel
1405	 52.43	0	1298927..1300015	-	362	119872925	-	Pisl_1432	-	cellulase
1406	 53.30	0	1300196..1300816	-	206	119872926	-	Pisl_1433	-	nuclease
1407	 47.36	0	1300952..1302940	-	662	119872927	-	Pisl_1434	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
1408	 47.58	0	1303037..1304770	-	577	119872928	-	Pisl_1435	-	AMP-dependent synthetase and ligase
1409	 48.50	0	1304878..1306110	+	410	119872929	-	Pisl_1436	-	butyryl-CoA dehydrogenase
1410	 49.36	0	1306112..1307290	+	392	119872930	-	Pisl_1437	-	acetyl-CoA acetyltransferase
1411	 44.19	0	1307293..1309023	+	576	119872931	-	Pisl_1438	-	3-hydroxybutyryl-CoA epimerase
1412	 45.19	0	1309276..1309680	+	134	119872932	-	Pisl_1439	-	translation initiation factor IF-2 subunit beta
1413	 57.33	+1	1309680..1310504	+	274	119872933	-	Pisl_1440	-	hypothetical protein
1414	 54.39	0	1310642..1310812	-	56	119872934	-	Pisl_1441	-	YHS domain-containing protein
1415	 56.44	+1	1310857..1313232	+	791	119872935	-	Pisl_1442	-	heavy metal translocating P-type ATPase
1416	 53.06	0	1313242..1315608	-	788	119872936	-	Pisl_1443	-	protein of unknown function DUF699, ATPase putative
1417	 50.12	0	1316325..1317128	-	267	119872937	-	Pisl_1444	-	hypothetical protein
1418	 63.23	+1	1317154..1317939	-	261	119872938	-	Pisl_1445	-	hypothetical protein
1419	 58.86	+1	1317982..1319301	+	439	119872939	-	Pisl_1446	-	ATPase
1420	 53.68	0	1319556..1320887	-	443	119872940	-	Pisl_1447	-	transposase, IS605 OrfB
1421	 56.21	0	1321454..1322161	+	235	119872941	-	Pisl_1448	-	paREP12
1422	 62.18	+1	1322458..1323750	-	430	119872942	-	Pisl_1450	-	thiamine biosynthesis protein ThiC
1423	 61.55	+1	1323843..1324448	+	201	119872943	-	Pisl_1451	-	protein of unknown function DUF71, ATP-binding region
1424	 62.47	+1	1324445..1325302	+	285	119872944	-	Pisl_1452	-	asparagine synthase
1425	 54.13	0	1325287..1325589	-	100	119872945	-	Pisl_1453	-	hypothetical protein
1426	 60.10	+1	1325610..1326401	-	263	119872946	-	Pisl_1454	-	NAD+ synthetase
1427	 60.86	+1	1326428..1326754	-	108	119872947	-	Pisl_1455	-	nitrogen regulatory protein P-II
1428	 62.00	+1	1326751..1327992	-	413	119872948	-	Pisl_1456	-	Rh family protein/ammonium transporter
1429	 64.05	+2	1328272..1329342	+	356	119872949	-	Pisl_1457	-	glycosyl transferase family protein
1430	 54.07	0	1329421..1329690	+	89	119872950	-	Pisl_1458	-	hypothetical protein
1431	 64.84	+2	1329867..1330904	-	345	119872951	-	Pisl_1459	-	glycosyl transferase, group 1
1432	 55.08	0	1330998..1331420	+	140	119872952	-	Pisl_1460	-	syntaxin domain-containing protein
1433	 57.58	+1	1331466..1331927	+	153	119872953	-	Pisl_1461	-	hypothetical protein
1434	 55.92	0	1331984..1333249	+	421	119872954	-	Pisl_1462	-	transposase, IS605 OrfB
1435	 65.67	+2	1333418..1334218	+	266	119872955	-	Pisl_1463	-	radical SAM domain-containing protein
1436	 59.25	+1	1334161..1335144	-	327	119872956	-	Pisl_1464	-	hypothetical protein
1437	 66.67	+2	1335186..1336565	-	459	119872957	-	Pisl_1465	-	hypothetical protein
1438	 63.28	+1	1336620..1337831	+	403	119872958	-	Pisl_1466	-	glycosyl transferase, group 1
1439	 54.91	0	1337828..1338601	+	257	119872959	-	Pisl_1467	-	hypothetical protein
1440	 53.33	0	1338602..1339531	-	309	119872960	-	Pisl_1468	-	glycosyl transferase family protein
1441	 64.56	+2	1339550..1340071	-	173	119872961	-	Pisl_1469	-	FkbM family methyltransferase
1442	 66.80	+2	1340318..1341088	+	256	119872962	-	Pisl_1470	-	hypothetical protein
1443	 58.72	+1	1341090..1342196	+	368	119872963	-	Pisl_1471	-	ATPase-like protein
1444	 60.61	+1	1342714..1343043	+	109	119872964	-	Pisl_1472	-	hypothetical protein
1445	 48.51	0	1343036..1343437	+	133	119872965	-	Pisl_1473	-	hypothetical protein
1446	 59.61	+1	1343733..1344299	+	188	119872966	-	Pisl_1474	-	PaREP1 domain-containing protein
1447	 58.42	+1	1344601..1344879	+	92	119872967	-	Pisl_1475	-	hypothetical protein
1448	 56.79	+1	1344870..1345112	+	80	119872968	-	Pisl_1476	-	DNA polymerase beta subunit
1449	 43.93	0	1345799..1346440	+	213	119872969	-	Pisl_1477	-	hypothetical protein
1450	 53.25	0	1346448..1346909	+	153	119872970	-	Pisl_1478	-	hypothetical protein
1451	 31.10	-2	1346906..1347487	+	193	119872971	-	Pisl_1479	-	hypothetical protein
1452	 53.26	0	1348339..1349427	-	362	119872972	-	Pisl_1480	-	IS605 family transposase OrfB
1453	 56.26	+1	1349864..1350286	+	140	119872973	-	Pisl_1481	-	hypothetical protein
1454	 57.92	+1	1350441..1350920	+	159	119872974	-	Pisl_1482	-	hypothetical protein
1455	 52.22	0	1351043..1351492	+	149	119872975	-	Pisl_1483	-	hypothetical protein
1456	 55.68	0	1351495..1352313	+	272	119872976	-	Pisl_1484	-	hypothetical protein
1457	 64.08	+2	1352560..1353138	-	192	119872977	-	Pisl_1485	-	hypothetical protein
1458	 61.25	+1	1353425..1353793	-	122	119872978	-	Pisl_1486	-	hypothetical protein
1459	 56.10	0	1353944..1354975	+	343	119872979	-	Pisl_1487	-	hypothetical protein
1460	 51.06	0	1354975..1355538	+	187	119872980	-	Pisl_1488	-	hypothetical protein
1461	 62.19	+1	1357151..1357843	+	230	119872981	-	Pisl_1489	-	nucleotidyl transferase
1462	 59.02	+1	1357840..1359081	+	413	119872982	-	Pisl_1490	-	NAD-dependent epimerase/dehydratase
1463	 27.49	-2	1359074..1360099	+	341	119872983	-	Pisl_1491	-	FkbM family methyltransferase
1464	 36.78	-1	1360077..1361264	+	395	119872984	-	Pisl_1492	-	glycosyl transferase, group 1
1465	 63.79	+2	1361268..1361684	+	138	119872985	-	Pisl_1493	-	hypothetical protein
1466	 64.09	+2	1361669..1362601	+	310	119872986	-	Pisl_1494	-	glycosyl transferase family protein
1467	 50.46	0	1362598..1363683	+	361	119872987	-	Pisl_1495	-	glycosyl transferase, group 1
1468	 51.69	0	1363665..1364759	+	364	119872988	-	Pisl_1496	-	glycosyl transferase, group 1
1469	 44.82	0	1364749..1365915	+	388	119872989	-	Pisl_1497	-	glycosyl transferase, group 1
1470	 42.33	0	1365893..1368436	+	847	119872990	-	Pisl_1498	-	hypothetical protein
1471	 55.65	0	1368528..1369643	+	371	119872991	-	Pisl_1499	-	glycosyl transferase, group 1
1472	 57.33	+1	1369648..1369872	+	74	119872992	-	Pisl_1500	-	hypothetical protein
1473	 59.01	+1	1369881..1370363	+	160	119872993	-	Pisl_1501	-	hypothetical protein
1474	 58.93	+1	1370391..1371359	+	322	119872994	-	Pisl_1502	-	hypothetical protein
1475	 59.22	+1	1371538..1372356	+	272	119872995	-	Pisl_1503	-	nucleotidyl transferase
1476	 61.82	+1	1372325..1373293	+	322	119872996	-	Pisl_1504	-	NAD-dependent epimerase/dehydratase
1477	 64.31	+2	1373272..1374546	+	424	119872997	-	Pisl_1505	-	UDP-glucose 6-dehydrogenase
1478	 54.51	0	1374604..1375911	+	435	119872998	-	Pisl_1506	-	sulfatase
1479	 55.38	0	1376110..1376295	+	61	119872999	-	Pisl_1507	-	hypothetical protein
1480	 57.63	+1	1376341..1377048	+	235	119873000	-	Pisl_1508	-	hypothetical protein
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.