IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.97   STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1312	 54.18	0	1208399..1209832	+	477	119872832	-	Pisl_1333	-	IS605 family transposase OrfB
1313	 51.46	0	1209998..1210306	+	102	119872833	-	Pisl_1334	-	hypothetical protein
1314	 60.57	+1	1210692..1211708	+	338	119872834	-	Pisl_1335	-	pyridoxine biosynthesis protein
1315	 52.71	0	1211705..1212313	+	202	119872835	-	Pisl_1336	-	glutamine amidotransferase subunit PdxT
1316	 56.85	+1	1212344..1213555	+	403	119872836	-	Pisl_1337	-	hypothetical protein
1317	 56.47	+1	1213523..1214071	-	182	119872837	-	Pisl_1338	-	methyltransferase type 11
1318	 54.16	0	1214117..1216330	+	737	119872838	-	Pisl_1339	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
1319	 53.19	0	1216452..1217675	-	407	119872839	-	Pisl_1340	-	glycosyl transferase, group 1
1320	 46.47	0	1217672..1218295	-	207	119872840	-	Pisl_1341	-	hypothetical protein
1321	 53.54	0	1218700..1219842	+	380	119872841	-	Pisl_1342	-	hypothetical protein
1322	 45.32	0	1219845..1222289	-	814	119872842	-	Pisl_1343	-	malate synthase
1323	 47.36	0	1222320..1223702	-	460	119872843	-	Pisl_1344	-	D-lactate dehydrogenase (cytochrome)
1324	 38.00	-1	1223699..1223998	-	99	119872844	-	Pisl_1345	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1325	 50.32	0	1223995..1224918	-	307	119872845	-	Pisl_1346	-	hypothetical protein
1326	 42.85	0	1225186..1226772	+	528	119872846	-	Pisl_1347	-	L-lactate permease
1327	 49.35	0	1226797..1227957	+	386	119872847	-	Pisl_1348	-	hypothetical protein
1328	 53.51	0	1228393..1228833	-	146	119872848	-	Pisl_1350	-	carbon monoxide dehydrogenase subunit G
1329	 52.24	0	1228862..1229665	+	267	119872849	-	Pisl_1351	-	hypothetical protein
1330	 60.45	+1	1229767..1231359	+	530	119872850	-	Pisl_1352	-	cytochrome bd ubiquinol oxidase, subunit I
1331	 59.24	+1	1231356..1232459	+	367	119872851	-	Pisl_1353	-	cytochrome oxidase,subunit I
1332	 51.08	0	1232506..1232922	+	138	119872852	-	Pisl_1354	-	hypothetical protein
1333	 61.51	+1	1233072..1234565	+	497	119872853	-	Pisl_1355	-	alpha-isopropylmalate/homocitrate synthase family transferase
1334	 56.48	+1	1234550..1234765	+	71	119872854	-	Pisl_1356	-	paREP6
1335	 56.58	+1	1234765..1235319	+	184	119872855	-	Pisl_1357	-	hypothetical protein
1336	 55.39	0	1235259..1235462	+	67	119872856	-	Pisl_1358	-	paREP6
1337	 58.18	+1	1235729..1236058	+	109	119872857	-	Pisl_1359	-	hypothetical protein
1338	 50.00	0	1236037..1236306	+	89	119872858	-	Pisl_1360	-	hypothetical protein
1339	 60.74	+1	1236729..1237487	-	252	119872859	-	Pisl_1361	-	hypothetical protein
1340	 60.56	+1	1237484..1238269	-	261	119872860	panB	Pisl_1362	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1341	 59.27	+1	1238298..1239149	+	283	119872861	-	Pisl_1363	-	2-dehydropantoate 2-reductase
1342	 57.40	+1	1239122..1239898	+	258	119872862	-	Pisl_1364	-	hypothetical protein
1343	 49.26	0	1240337..1240606	+	89	119872863	-	Pisl_1365	-	hypothetical protein
1344	 66.24	+2	1240941..1241408	-	155	119872864	-	Pisl_1366	-	oxidoreductase, molybdopterin binding
1345	 63.13	+1	1241671..1242660	-	329	119872865	-	Pisl_1367	-	hypothetical protein
1346	 59.60	+1	1242734..1243723	+	329	119872866	-	Pisl_1368	-	hypothetical protein
1347	 62.14	+1	1243711..1244637	+	308	119872867	-	Pisl_1369	-	aminotransferase, class I and II
1348	 59.50	+1	1244616..1245299	+	227	119872868	-	Pisl_1370	-	cobalamin-5-phosphate synthase CobS
1349	 56.28	+1	1245578..1246453	+	291	119872869	-	Pisl_1371	-	cobalamin biosynthesis protein CbiB
1350	 54.11	0	1246419..1246880	-	153	119872870	-	Pisl_1372	-	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
1351	 62.72	+1	1246920..1247756	+	278	119872871	-	Pisl_1373	-	paREP1
1352	 50.97	0	1248185..1248598	+	137	119872872	-	Pisl_1374	-	hypothetical protein
1353	 51.04	0	1248802..1249185	+	127	119872873	-	Pisl_1375	-	hypothetical protein
1354	 61.41	+1	1249233..1250411	-	392	119872874	-	Pisl_1376	-	hypothetical protein
1355	 56.55	+1	1250891..1251157	+	88	119872875	-	Pisl_1377	-	HEPN domain-containing protein
1356	 60.13	+1	1251424..1251882	-	152	119872876	-	Pisl_1379	-	PaREP8 domain-containing protein
1357	 46.56	0	1252784..1253146	+	120	119872877	-	Pisl_1381	-	aspartate 1-decarboxylase
1358	 54.48	0	1253413..1254618	-	401	119872878	-	Pisl_1382	-	transposase, IS605 OrfB
1359	 58.65	+1	1254830..1255141	+	103	119872879	-	Pisl_1383	-	hypothetical protein
1360	 64.26	+2	1255163..1255411	+	82	119872880	-	Pisl_1384	-	hypothetical protein
1361	 56.19	0	1255408..1256514	+	368	119872881	-	Pisl_1385	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1362	 52.31	0	1256495..1256710	-	71	119872882	-	Pisl_1386	-	hypothetical protein
1363	 48.35	0	1256766..1257098	+	110	119872883	-	Pisl_1387	-	hypothetical protein
1364	 45.54	0	1257194..1257865	+	223	119872884	-	Pisl_1388	-	hypothetical protein
1365	 49.44	0	1259290..1259556	+	88	119872885	-	Pisl_1389	-	hypothetical protein
1366	 54.16	0	1259716..1261098	+	460	119872886	-	Pisl_1390	-	transposase, IS605 OrfB
1367	 52.38	0	1261404..1262054	+	216	119872887	-	Pisl_1391	-	methyltransferase type 11
1368	 54.49	0	1262042..1262575	-	177	119872888	-	Pisl_1392	-	hypothetical protein
1369	 60.46	+1	1262572..1263183	-	203	119872889	-	Pisl_1393	-	methyltransferase type 11
1370	 61.71	+1	1263371..1264378	-	335	119872890	-	Pisl_1394	-	N-acetyl-ornithine/N-acetyl-lysine deacetylase
1371	 51.52	0	1264453..1264716	+	87	119872891	-	Pisl_1395	-	Fis family transcriptional regulator
1372	 50.16	0	1264713..1265021	+	102	119872892	-	Pisl_1396	-	cupin 2 domain-containing protein
1373	 59.59	+1	1265587..1267239	+	550	119872893	-	Pisl_1397	-	peptidase S49
1374	 62.61	+1	1267220..1268155	-	311	119872894	-	Pisl_1398	-	phosphoesterase, DHHA1
1375	 57.74	+1	1268600..1269271	+	223	119872895	-	Pisl_1399	-	ABC transporter related
1376	 51.89	0	1269561..1270643	-	360	119872896	-	Pisl_1401	-	AAA ATPase
1377	 62.36	+1	1270699..1271487	-	262	119872897	-	Pisl_1402	-	type II secretion system protein
1378	 61.12	+1	1271484..1272962	-	492	119872898	-	Pisl_1403	-	type II secretion system protein E
1379	 63.86	+2	1272935..1273681	-	248	119872899	-	Pisl_1404	-	type II secretion system protein
1380	 51.28	0	1273711..1274139	-	142	119872900	-	Pisl_1405	-	hypothetical protein
1381	 57.89	+1	1274499..1274897	+	132	119872901	-	Pisl_1406	-	hypothetical protein
1382	 58.96	+1	1274894..1278397	+	1167	119872902	-	Pisl_1407	-	hypothetical protein
1383	 69.28	+2	1278489..1278794	-	101	119872903	-	Pisl_1408	-	hypothetical protein
1384	 63.61	+2	1278804..1279949	+	381	119872904	-	Pisl_1409	-	hypothetical protein
1385	 55.17	0	1280004..1280264	+	86	119872905	-	Pisl_1410	-	hypothetical protein
1386	 62.39	+1	1281223..1282227	+	334	119872906	-	Pisl_1412	-	peptidase S1 and S6, chymotrypsin/Hap
1387	 58.18	+1	1282498..1283946	+	482	119872907	-	Pisl_1413	-	hypothetical protein
1388	 54.60	0	1283927..1285177	-	416	119872908	-	Pisl_1414	-	transposase, IS605 OrfB
1389	 53.70	0	1285503..1285826	+	107	119872909	-	Pisl_1415	-	hypothetical protein
1390	 69.47	+2	1285889..1286281	+	130	119872910	-	Pisl_1416	-	hypothetical protein
1391	 51.73	0	1286350..1286811	+	153	119872911	-	Pisl_1417	-	hypothetical protein
1392	 60.72	+1	1287075..1288133	+	352	119872912	-	Pisl_1418	-	uncharacterized linocin/CFP29-like protein
1393	 60.75	+1	1288215..1289567	-	450	119872913	-	Pisl_1419	-	phosphomethylpyrimidine kinase
1394	 50.82	0	1289584..1290315	-	243	119872914	-	Pisl_1420	-	5-formyltetrahydrofolate cyclo-ligase
1395	 46.53	0	1290308..1291027	-	239	119872915	-	Pisl_1421	-	hypothetical protein
1396	 52.99	0	1292908..1293426	+	172	119872916	-	Pisl_1423	-	hypothetical protein
1397	 59.33	+1	1293410..1293859	+	149	119872917	-	Pisl_1424	-	hypothetical protein
1398	 42.94	0	1294531..1294707	+	58	119872918	-	Pisl_1425	-	paREP4
1399	 43.84	0	1294733..1295008	+	91	119872919	-	Pisl_1426	-	ArsR family transcriptional regulator
1400	 48.95	0	1295014..1295346	-	110	119872920	-	Pisl_1427	-	hypothetical protein
1401	 54.44	0	1295353..1295622	-	89	119872921	-	Pisl_1428	-	hypothetical protein
1402	 56.87	+1	1295960..1296490	-	176	119872922	-	Pisl_1429	-	NUDIX hydrolase
1403	 58.88	+1	1296814..1297365	-	183	119872923	-	Pisl_1430	-	PaREP1 domain-containing protein
1404	 43.17	0	1297935..1298930	-	331	119872924	-	Pisl_1431	-	MscS mechanosensitive ion channel
1405	 52.43	0	1298927..1300015	-	362	119872925	-	Pisl_1432	-	cellulase
1406	 53.30	0	1300196..1300816	-	206	119872926	-	Pisl_1433	-	nuclease
1407	 47.36	0	1300952..1302940	-	662	119872927	-	Pisl_1434	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
1408	 47.58	0	1303037..1304770	-	577	119872928	-	Pisl_1435	-	AMP-dependent synthetase and ligase
1409	 48.50	0	1304878..1306110	+	410	119872929	-	Pisl_1436	-	butyryl-CoA dehydrogenase
1410	 49.36	0	1306112..1307290	+	392	119872930	-	Pisl_1437	-	acetyl-CoA acetyltransferase
1411	 44.19	0	1307293..1309023	+	576	119872931	-	Pisl_1438	-	3-hydroxybutyryl-CoA epimerase
48.97	MEAN

7.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.