IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1269	 41.32	-1	1171034..1171321	+	95	119872789	-	Pisl_1290	-	zinc finger SWIM domain-containing protein
1270	 49.00	0	1171322..1172170	-	282	119872790	-	Pisl_1291	-	lysine biosynthesis enzyme LysX
1271	 48.79	0	1172252..1172458	+	68	119872791	-	Pisl_1292	-	hypothetical protein
1272	 42.71	0	1172513..1172704	+	63	119872792	-	Pisl_1293	-	hypothetical protein
1273	 50.35	0	1173076..1173363	-	95	119872793	-	Pisl_1294	-	acylphosphatase
1274	 50.15	0	1173417..1174100	+	227	119872794	-	Pisl_1295	-	deoxyribose-phosphate aldolase
1275	 44.97	0	1174584..1174901	-	105	119872795	-	Pisl_1296	-	hypothetical protein
1276	 51.69	0	1174898..1175965	-	355	119872796	-	Pisl_1297	-	phospholipase D/transphosphatidylase
1277	 53.21	0	1175982..1176479	-	165	119872797	-	Pisl_1298	-	methyltransferase type 11
1278	 47.24	0	1176476..1177597	-	373	119872798	-	Pisl_1299	-	hypothetical protein
1279	 44.16	0	1177647..1178717	+	356	119872799	-	Pisl_1300	-	ABC transporter related
1280	 49.15	0	1178775..1179956	+	393	119872800	-	Pisl_1301	-	acetyl-CoA acetyltransferase
1281	 45.68	0	1180020..1180829	+	269	119872801	-	Pisl_1302	-	NAD+ synthetase
1282	 39.49	-1	1180822..1181292	+	156	119872802	-	Pisl_1303	-	PadR-like family transcriptional regulator
1283	 52.04	0	1181530..1182240	+	236	119872803	-	Pisl_1304	-	hypothetical protein
1284	 44.90	0	1182425..1183012	+	195	119872804	-	Pisl_1305	-	ribonuclease HII
1285	 46.14	0	1183062..1183670	+	202	119872805	rps5p	Pisl_1306	-	30S ribosomal protein S5P
1286	 46.63	0	1183667..1184200	+	177	119872806	rpl30p	Pisl_1307	-	50S ribosomal protein L30P
1287	 45.71	0	1184201..1184806	-	201	119872807	-	Pisl_1308	-	peptidase M50
1288	 42.68	0	1185808..1186053	-	81	119872808	-	Pisl_1309	-	hypothetical protein
1289	 44.65	0	1186339..1188105	+	588	119872809	-	Pisl_1310	-	peptidase S9 prolyl oligopeptidase
1290	 56.86	+1	1188152..1188406	+	84	119872810	-	Pisl_1311	-	hypothetical protein
1291	 42.92	0	1188557..1189432	+	291	119872811	-	Pisl_1312	-	spermine synthase
1292	 46.80	0	1189425..1190642	+	405	119872812	-	Pisl_1313	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1293	 46.12	0	1190625..1191320	-	231	119872813	-	Pisl_1314	-	hypothetical protein
1294	 44.68	0	1191372..1191803	+	143	119872814	-	Pisl_1315	-	hypothetical protein
1295	 52.71	0	1191804..1193243	+	479	119872815	-	Pisl_1316	-	4-alpha-glucanotransferase
1296	 47.62	0	1193502..1193732	-	76	119872816	-	Pisl_1317	-	hypothetical protein
1297	 45.10	0	1193732..1194037	-	101	119872817	-	Pisl_1318	-	hypothetical protein
1298	 50.99	0	1194056..1194961	-	301	119872818	-	Pisl_1319	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1299	 60.46	+1	1194977..1196104	-	375	119872819	-	Pisl_1320	-	hypothetical protein
1300	 57.38	+1	1196166..1197263	+	365	119872820	-	Pisl_1321	-	ABC-2 type transporter
1301	 61.65	+1	1197260..1197997	+	245	119872821	-	Pisl_1322	-	ABC transporter related
1302	 59.86	+1	1197945..1198664	-	239	119872822	-	Pisl_1323	-	hypothetical protein
1303	 48.23	0	1198657..1199703	-	348	119872823	-	Pisl_1324	-	radical SAM domain-containing protein
1304	 48.48	0	1199748..1200836	+	362	119872824	-	Pisl_1325	-	radical SAM domain-containing protein
1305	 57.24	+1	1201697..1202131	-	144	119872825	-	Pisl_1326	-	signal-transduction protein
1306	 44.22	0	1203388..1203690	-	100	119872826	-	Pisl_1327	-	hypothetical protein
1307	 51.84	0	1203723..1204538	+	271	119872827	-	Pisl_1328	-	putative circadian clock protein, KaiC
1308	 49.30	0	1204535..1204891	-	118	119872828	-	Pisl_1329	-	hypothetical protein
1309	 63.95	+2	1205174..1205467	+	97	119872829	-	Pisl_1330	-	hypothetical protein
1310	 50.35	0	1205540..1206808	+	422	119872830	-	Pisl_1331	-	major facilitator transporter
1311	 51.05	0	1206991..1207803	+	270	119872831	-	Pisl_1332	-	radical SAM domain-containing protein
1312	 54.18	0	1208399..1209832	+	477	119872832	-	Pisl_1333	-	IS605 family transposase OrfB
1313	 51.46	0	1209998..1210306	+	102	119872833	-	Pisl_1334	-	hypothetical protein
1314	 60.57	+1	1210692..1211708	+	338	119872834	-	Pisl_1335	-	pyridoxine biosynthesis protein
1315	 52.71	0	1211705..1212313	+	202	119872835	-	Pisl_1336	-	glutamine amidotransferase subunit PdxT
1316	 56.85	+1	1212344..1213555	+	403	119872836	-	Pisl_1337	-	hypothetical protein
1317	 56.47	+1	1213523..1214071	-	182	119872837	-	Pisl_1338	-	methyltransferase type 11
1318	 54.16	0	1214117..1216330	+	737	119872838	-	Pisl_1339	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
1319	 53.19	0	1216452..1217675	-	407	119872839	-	Pisl_1340	-	glycosyl transferase, group 1
1320	 46.47	0	1217672..1218295	-	207	119872840	-	Pisl_1341	-	hypothetical protein
1321	 53.54	0	1218700..1219842	+	380	119872841	-	Pisl_1342	-	hypothetical protein
1322	 45.32	0	1219845..1222289	-	814	119872842	-	Pisl_1343	-	malate synthase
1323	 47.36	0	1222320..1223702	-	460	119872843	-	Pisl_1344	-	D-lactate dehydrogenase (cytochrome)
1324	 38.00	-1	1223699..1223998	-	99	119872844	-	Pisl_1345	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1325	 50.32	0	1223995..1224918	-	307	119872845	-	Pisl_1346	-	hypothetical protein
1326	 42.85	0	1225186..1226772	+	528	119872846	-	Pisl_1347	-	L-lactate permease
1327	 49.35	0	1226797..1227957	+	386	119872847	-	Pisl_1348	-	hypothetical protein
1328	 53.51	0	1228393..1228833	-	146	119872848	-	Pisl_1350	-	carbon monoxide dehydrogenase subunit G
1329	 52.24	0	1228862..1229665	+	267	119872849	-	Pisl_1351	-	hypothetical protein
1330	 60.45	+1	1229767..1231359	+	530	119872850	-	Pisl_1352	-	cytochrome bd ubiquinol oxidase, subunit I
1331	 59.24	+1	1231356..1232459	+	367	119872851	-	Pisl_1353	-	cytochrome oxidase,subunit I
1332	 51.08	0	1232506..1232922	+	138	119872852	-	Pisl_1354	-	hypothetical protein
1333	 61.51	+1	1233072..1234565	+	497	119872853	-	Pisl_1355	-	alpha-isopropylmalate/homocitrate synthase family transferase
1334	 56.48	+1	1234550..1234765	+	71	119872854	-	Pisl_1356	-	paREP6
1335	 56.58	+1	1234765..1235319	+	184	119872855	-	Pisl_1357	-	hypothetical protein
1336	 55.39	0	1235259..1235462	+	67	119872856	-	Pisl_1358	-	paREP6
1337	 58.18	+1	1235729..1236058	+	109	119872857	-	Pisl_1359	-	hypothetical protein
1338	 50.00	0	1236037..1236306	+	89	119872858	-	Pisl_1360	-	hypothetical protein
1339	 60.74	+1	1236729..1237487	-	252	119872859	-	Pisl_1361	-	hypothetical protein
1340	 60.56	+1	1237484..1238269	-	261	119872860	panB	Pisl_1362	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1341	 59.27	+1	1238298..1239149	+	283	119872861	-	Pisl_1363	-	2-dehydropantoate 2-reductase
1342	 57.40	+1	1239122..1239898	+	258	119872862	-	Pisl_1364	-	hypothetical protein
1343	 49.26	0	1240337..1240606	+	89	119872863	-	Pisl_1365	-	hypothetical protein
1344	 66.24	+2	1240941..1241408	-	155	119872864	-	Pisl_1366	-	oxidoreductase, molybdopterin binding
1345	 63.13	+1	1241671..1242660	-	329	119872865	-	Pisl_1367	-	hypothetical protein
1346	 59.60	+1	1242734..1243723	+	329	119872866	-	Pisl_1368	-	hypothetical protein
1347	 62.14	+1	1243711..1244637	+	308	119872867	-	Pisl_1369	-	aminotransferase, class I and II
1348	 59.50	+1	1244616..1245299	+	227	119872868	-	Pisl_1370	-	cobalamin-5-phosphate synthase CobS
1349	 56.28	+1	1245578..1246453	+	291	119872869	-	Pisl_1371	-	cobalamin biosynthesis protein CbiB
1350	 54.11	0	1246419..1246880	-	153	119872870	-	Pisl_1372	-	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
1351	 62.72	+1	1246920..1247756	+	278	119872871	-	Pisl_1373	-	paREP1
1352	 50.97	0	1248185..1248598	+	137	119872872	-	Pisl_1374	-	hypothetical protein
1353	 51.04	0	1248802..1249185	+	127	119872873	-	Pisl_1375	-	hypothetical protein
1354	 61.41	+1	1249233..1250411	-	392	119872874	-	Pisl_1376	-	hypothetical protein
1355	 56.55	+1	1250891..1251157	+	88	119872875	-	Pisl_1377	-	HEPN domain-containing protein
1356	 60.13	+1	1251424..1251882	-	152	119872876	-	Pisl_1379	-	PaREP8 domain-containing protein
1357	 46.56	0	1252784..1253146	+	120	119872877	-	Pisl_1381	-	aspartate 1-decarboxylase
1358	 54.48	0	1253413..1254618	-	401	119872878	-	Pisl_1382	-	transposase, IS605 OrfB
1359	 58.65	+1	1254830..1255141	+	103	119872879	-	Pisl_1383	-	hypothetical protein
1360	 64.26	+2	1255163..1255411	+	82	119872880	-	Pisl_1384	-	hypothetical protein
1361	 56.19	0	1255408..1256514	+	368	119872881	-	Pisl_1385	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1362	 52.31	0	1256495..1256710	-	71	119872882	-	Pisl_1386	-	hypothetical protein
1363	 48.35	0	1256766..1257098	+	110	119872883	-	Pisl_1387	-	hypothetical protein
1364	 45.54	0	1257194..1257865	+	223	119872884	-	Pisl_1388	-	hypothetical protein
1365	 49.44	0	1259290..1259556	+	88	119872885	-	Pisl_1389	-	hypothetical protein
1366	 54.16	0	1259716..1261098	+	460	119872886	-	Pisl_1390	-	transposase, IS605 OrfB
1367	 52.38	0	1261404..1262054	+	216	119872887	-	Pisl_1391	-	methyltransferase type 11
1368	 54.49	0	1262042..1262575	-	177	119872888	-	Pisl_1392	-	hypothetical protein
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.