IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1193	 42.23	0	1097164..1097691	+	175	119872713	-	Pisl_1210	-	ZPR1-like zinc finger protein
1194	 46.53	0	1097798..1098244	-	148	119872714	-	Pisl_1211	-	phosphoribosyl-AMP cyclohydrolase
1195	 44.54	0	1098245..1099252	+	335	119872715	-	Pisl_1212	-	aminotransferase, class I and II
1196	 44.52	0	1099291..1100139	+	282	119872716	hisG	Pisl_1213	-	ATP phosphoribosyltransferase
1197	 57.19	+1	1100143..1100427	-	94	119872717	-	Pisl_1214	-	phosphoribosyl-ATP pyrophosphohydrolase
1198	 60.99	+1	1100424..1101533	-	369	119872718	-	Pisl_1215	-	histidinol dehydrogenase
1199	 59.46	+1	1101530..1102306	-	258	119872719	-	Pisl_1216	-	imidazoleglycerol phosphate synthase, cyclase subunit
1200	 60.28	+1	1102333..1102896	+	187	119872720	-	Pisl_1217	-	imidazoleglycerol-phosphate dehydratase
1201	 59.45	+1	1102893..1103585	+	230	119872721	-	Pisl_1218	-	histidine biosynthesis protein
1202	 51.48	0	1103575..1105029	-	484	119872722	-	Pisl_1219	-	hypothetical protein
1203	 49.68	0	1106170..1107423	+	417	119872723	-	Pisl_1221	-	glutamyl-tRNA(Gln) amidotransferase subunit D
1204	 49.81	0	1107420..1107947	+	175	119872724	-	Pisl_1222	-	metal dependent phosphohydrolase
1205	 47.28	0	1108299..1108592	+	97	119872725	-	Pisl_1223	-	hypothetical protein
1206	 42.71	0	1109197..1109580	-	127	119872726	-	Pisl_1225	-	signal-transduction protein
1207	 48.33	0	1109677..1111536	+	619	119872727	-	Pisl_1226	-	aldehyde ferredoxin oxidoreductase (aor)
1208	 53.76	0	1111755..1112978	-	407	119872728	-	Pisl_1227	-	transposase, IS605 OrfB
1209	 59.17	+1	1113328..1113714	-	128	119872729	-	Pisl_1228	-	hypothetical protein
1210	 48.48	0	1113811..1114206	-	131	119872730	-	Pisl_1229	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
1211	 45.02	0	1114395..1114916	+	173	119872731	-	Pisl_1230	-	pyruvate/ketoisovalerate oxidoreductase, gamma subunit
1212	 43.59	0	1114913..1115224	+	103	119872732	-	Pisl_1231	-	pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
1213	 47.12	0	1115221..1116402	+	393	119872733	-	Pisl_1232	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1214	 46.56	0	1116399..1117343	+	314	119872734	-	Pisl_1233	-	thiamine pyrophosphate binding domain-containing protein
1215	 56.96	+1	1117542..1119488	+	648	119872735	-	Pisl_1234	-	hypothetical protein
1216	 38.60	-1	1119535..1119876	+	113	119872736	-	Pisl_1235	-	hypothetical protein
1217	 48.27	0	1120062..1121480	+	472	119872737	-	Pisl_1236	-	glycoside hydrolase family protein
1218	 47.02	0	1121480..1122721	+	413	119872738	-	Pisl_1237	-	major facilitator transporter
1219	 46.69	0	1122760..1123755	+	331	119872739	-	Pisl_1238	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
1220	 43.78	0	1123748..1124446	-	232	119872740	-	Pisl_1239	-	hypothetical protein
1221	 54.86	0	1124772..1125152	-	126	119872741	-	Pisl_1240	-	hypothetical protein
1222	 51.06	0	1125917..1126294	+	125	119872742	-	Pisl_1241	-	hypothetical protein
1223	 54.69	0	1126487..1127371	-	294	119872743	-	Pisl_1242	-	Fis family transcriptional regulator
1224	 46.93	0	1128093..1128629	+	178	119872744	-	Pisl_1243	-	hypothetical protein
1225	 40.10	-1	1128621..1129019	-	132	119872745	-	Pisl_1244	-	hypothetical protein
1226	 44.56	0	1129330..1133043	+	1237	119872746	-	Pisl_1245	-	reverse gyrase
1227	 51.06	0	1133188..1136025	-	945	119872747	leuS	Pisl_1246	-	leucyl-tRNA synthetase
1228	 46.03	0	1136046..1136888	-	280	119872748	-	Pisl_1247	-	hypothetical protein
1229	 40.07	-1	1137052..1137318	+	88	119872749	-	Pisl_1248	-	regulatory protein, ArsR
1230	 46.70	0	1137482..1138177	-	231	119872750	-	Pisl_1249	-	rhomboid family protein
1231	 50.48	0	1138294..1139226	-	310	119872751	-	Pisl_1250	-	transcriptional regulator, TrmB
1232	 40.31	-1	1139263..1140165	-	300	119872752	-	Pisl_1251	-	hypothetical protein
1233	 47.27	0	1140232..1141128	-	298	119872753	-	Pisl_1252	-	radical SAM domain-containing protein
1234	 42.75	0	1141179..1141964	+	261	119872754	-	Pisl_1253	-	hypothetical protein
1235	 46.36	0	1142041..1142685	-	214	119872755	-	Pisl_1254	-	metallophosphoesterase
1236	 46.04	0	1142678..1143409	-	243	119872756	-	Pisl_1255	-	transposase, IS605 OrfB
1237	 48.64	0	1143472..1143765	+	97	119872757	-	Pisl_1256	-	translation initiation factor IF-1A
1238	 44.30	0	1144158..1144604	+	148	119872758	-	Pisl_1257	-	hypothetical protein
1239	 46.26	0	1144737..1145471	-	244	119872759	-	Pisl_1258	-	ABC transporter related
1240	 45.80	0	1145459..1146838	-	459	119872760	-	Pisl_1259	-	binding-protein-dependent transport systems inner membrane component
1241	 48.91	0	1146962..1147648	-	228	119872761	-	Pisl_1260	-	glycerophosphoryl diester phosphodiesterase
1242	 47.91	0	1147837..1148577	+	246	119872762	-	Pisl_1261	-	UBA/THIF-type NAD/FAD binding protein
1243	 56.50	+1	1148822..1149637	-	271	119872763	-	Pisl_1262	-	transposase, IS605 OrfB
1244	 50.93	0	1150356..1151759	-	467	119872764	-	Pisl_1264	-	V-type ATP synthase subunit B
1245	 46.55	0	1151803..1152657	+	284	119872765	-	Pisl_1265	-	6-phosphogluconate dehydrogenase, NAD-binding
1246	 41.80	0	1152695..1154005	+	436	119872766	-	Pisl_1266	-	L-carnitine dehydratase/bile acid-inducible protein F
1247	 45.60	0	1154002..1155159	+	385	119872767	-	Pisl_1267	-	L-carnitine dehydratase/bile acid-inducible protein F
1248	 45.05	0	1155143..1155415	-	90	119872768	-	Pisl_1268	-	hypothetical protein
1249	 48.82	0	1155438..1156031	-	197	119872769	-	Pisl_1269	-	GCN5-related N-acetyltransferase
1250	 47.39	0	1156274..1156906	-	210	119872770	-	Pisl_1270	-	hypothetical protein
1251	 60.70	+1	1156896..1157381	-	161	119872771	-	Pisl_1271	-	hypothetical protein
1252	 64.52	+2	1157415..1157786	-	123	119872772	-	Pisl_1272	-	hypothetical protein
1253	 53.45	0	1158123..1158455	+	110	119872773	-	Pisl_1273	-	hypothetical protein
1254	 54.06	0	1158643..1159578	+	311	119872774	-	Pisl_1274	-	nuclease
1255	 48.91	0	1159612..1159932	+	106	119872775	-	Pisl_1275	-	hypothetical protein
1256	 62.65	+1	1159908..1160156	+	82	119872776	-	Pisl_1276	-	hypothetical protein
1257	 52.65	0	1160252..1160515	+	87	119872777	-	Pisl_1277	-	hypothetical protein
1258	 61.16	+1	1160559..1160903	+	114	119872778	-	Pisl_1278	-	hypothetical protein
1259	 54.40	0	1161123..1162394	+	423	119872779	-	Pisl_1279	-	transposase, IS605 OrfB
1260	 47.53	0	1162683..1163450	+	255	119872780	-	Pisl_1280	-	pseudouridylate synthase
1261	 41.36	-1	1163670..1164317	+	215	119872781	-	Pisl_1281	-	hypothetical protein
1262	 46.04	0	1164320..1164799	-	159	119872782	-	Pisl_1282	-	hypothetical protein
1263	 49.07	0	1164844..1165593	+	249	119872783	-	Pisl_1283	-	diphthine synthase
1264	 42.86	0	1165600..1166124	+	174	119872784	-	Pisl_1284	-	hypothetical protein
1265	 46.98	0	1167297..1168454	-	385	119872785	-	Pisl_1286	-	hypothetical protein
1266	 46.92	0	1168475..1169350	-	291	119872786	-	Pisl_1287	-	ABC-3 protein
1267	 46.72	0	1169334..1170095	-	253	119872787	-	Pisl_1288	-	ABC transporter related
1268	 46.28	0	1170238..1171017	+	259	119872788	-	Pisl_1289	-	translation initiation factor aIF-2B subunit, conjectural
1269	 41.32	-1	1171034..1171321	+	95	119872789	-	Pisl_1290	-	zinc finger SWIM domain-containing protein
1270	 49.00	0	1171322..1172170	-	282	119872790	-	Pisl_1291	-	lysine biosynthesis enzyme LysX
1271	 48.79	0	1172252..1172458	+	68	119872791	-	Pisl_1292	-	hypothetical protein
1272	 42.71	0	1172513..1172704	+	63	119872792	-	Pisl_1293	-	hypothetical protein
1273	 50.35	0	1173076..1173363	-	95	119872793	-	Pisl_1294	-	acylphosphatase
1274	 50.15	0	1173417..1174100	+	227	119872794	-	Pisl_1295	-	deoxyribose-phosphate aldolase
1275	 44.97	0	1174584..1174901	-	105	119872795	-	Pisl_1296	-	hypothetical protein
1276	 51.69	0	1174898..1175965	-	355	119872796	-	Pisl_1297	-	phospholipase D/transphosphatidylase
1277	 53.21	0	1175982..1176479	-	165	119872797	-	Pisl_1298	-	methyltransferase type 11
1278	 47.24	0	1176476..1177597	-	373	119872798	-	Pisl_1299	-	hypothetical protein
1279	 44.16	0	1177647..1178717	+	356	119872799	-	Pisl_1300	-	ABC transporter related
1280	 49.15	0	1178775..1179956	+	393	119872800	-	Pisl_1301	-	acetyl-CoA acetyltransferase
1281	 45.68	0	1180020..1180829	+	269	119872801	-	Pisl_1302	-	NAD+ synthetase
1282	 39.49	-1	1180822..1181292	+	156	119872802	-	Pisl_1303	-	PadR-like family transcriptional regulator
1283	 52.04	0	1181530..1182240	+	236	119872803	-	Pisl_1304	-	hypothetical protein
1284	 44.90	0	1182425..1183012	+	195	119872804	-	Pisl_1305	-	ribonuclease HII
1285	 46.14	0	1183062..1183670	+	202	119872805	rps5p	Pisl_1306	-	30S ribosomal protein S5P
1286	 46.63	0	1183667..1184200	+	177	119872806	rpl30p	Pisl_1307	-	50S ribosomal protein L30P
1287	 45.71	0	1184201..1184806	-	201	119872807	-	Pisl_1308	-	peptidase M50
1288	 42.68	0	1185808..1186053	-	81	119872808	-	Pisl_1309	-	hypothetical protein
1289	 44.65	0	1186339..1188105	+	588	119872809	-	Pisl_1310	-	peptidase S9 prolyl oligopeptidase
1290	 56.86	+1	1188152..1188406	+	84	119872810	-	Pisl_1311	-	hypothetical protein
1291	 42.92	0	1188557..1189432	+	291	119872811	-	Pisl_1312	-	spermine synthase
1292	 46.80	0	1189425..1190642	+	405	119872812	-	Pisl_1313	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.