IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1045	 43.20	0	949333..950649	+	438	119872565	-	Pisl_1056	-	hypothetical protein
1046	 52.44	0	951034..951279	+	81	119872566	-	Pisl_1057	-	hypothetical protein
1047	 41.53	-1	951638..951820	-	60	119872567	-	Pisl_1058	-	hypothetical protein
1048	 54.79	0	952058..952537	-	159	119872568	-	Pisl_1059	-	transposase, IS605 OrfB
1049	 42.39	0	952658..954049	+	463	119872569	-	Pisl_1060	-	hypothetical protein
1050	 42.87	0	954078..955367	-	429	119872570	-	Pisl_1061	-	phosphomannomutase
1051	 45.01	0	955415..956536	+	373	119872571	-	Pisl_1062	-	hypothetical protein
1052	 45.66	0	956623..957255	-	210	119872572	-	Pisl_1063	-	orotidine 5'-phosphate decarboxylase
1053	 53.36	0	957708..959165	-	485	119872573	-	Pisl_1064	-	transposase, IS605 OrfB
1054	 54.23	0	959457..959882	+	141	119872574	-	Pisl_1065	-	transposase, IS605 OrfB
1055	 42.08	0	960230..961144	+	304	119872575	pyrB	Pisl_1066	-	aspartate carbamoyltransferase catalytic subunit
1056	 58.67	+1	961619..962869	-	416	119872576	-	Pisl_1067	-	IS605 family transposase OrfB
1057	 42.94	0	963252..963782	+	176	119872577	-	Pisl_1068	-	ribosomal-protein-alanine acetyltransferase
1058	 54.53	0	963826..965349	+	507	119872578	-	Pisl_1069	-	hypothetical protein
1059	 49.70	0	965353..966837	+	494	119872579	-	Pisl_1070	-	type II secretion system protein E
1060	 40.63	-1	967024..967530	+	168	119872580	-	Pisl_1071	-	hypothetical protein
1061	 44.51	0	967580..969064	+	494	119872581	-	Pisl_1072	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
1062	 43.93	0	969053..969769	-	238	119872582	-	Pisl_1073	-	hypothetical protein
1063	 38.79	-1	969766..970278	-	170	119872583	-	Pisl_1074	-	transcription factor TFIIE, alpha subunit
1064	 41.47	-1	970312..971430	-	372	119872584	-	Pisl_1075	-	small GTP-binding protein
1065	 44.65	0	971420..971905	-	161	119872585	-	Pisl_1076	-	XRE family transcriptional regulator
1066	 44.00	0	971952..972401	+	149	119872586	-	Pisl_1077	-	PUA domain-containing protein
1067	 42.81	0	972415..972699	-	94	119872587	-	Pisl_1078	-	hypothetical protein
1068	 37.72	-1	972677..973018	-	113	119872588	-	Pisl_1079	-	hypothetical protein
1069	 43.21	0	973696..973938	+	80	119872589	-	Pisl_1081	-	like-Sm ribonucleoprotein, core
1070	 43.40	0	973935..974093	+	52	119872590	rpl37e	Pisl_1082	-	50S ribosomal protein L37e
1071	 43.69	0	974138..974755	+	205	119872591	-	Pisl_1083	-	multiple antibiotic resistance (MarC)-related protein
1072	 45.24	0	974838..975761	+	307	119872592	-	Pisl_1084	-	hypothetical protein
1073	 42.93	0	975758..976174	-	138	119872593	-	Pisl_1085	-	cytidine deaminase
1074	 56.43	+1	976244..976702	-	152	119872594	-	Pisl_1086	-	hypothetical protein
1075	 52.68	0	976705..977040	-	111	119872595	-	Pisl_1087	-	hypothetical protein
1076	 39.83	-1	977664..978602	+	312	119872596	-	Pisl_1088	-	hypothetical protein
1077	 46.23	0	978639..979421	+	260	119872597	-	Pisl_1089	-	short-chain dehydrogenase/reductase SDR
1078	 43.93	0	979410..980702	-	430	119872598	glyA	Pisl_1090	-	serine hydroxymethyltransferase
1079	 46.39	0	980733..981467	-	244	119872599	-	Pisl_1091	-	molybdenum cofactor biosynthesis protein (moaC)
1080	 44.24	0	981464..981793	-	109	119872600	-	Pisl_1092	-	hypothetical protein
1081	 47.89	0	981822..982886	-	354	119872601	-	Pisl_1093	-	isopentenyl pyrophosphate isomerase
1082	 51.42	0	982886..983626	-	246	119872602	rpl2p	Pisl_1094	-	50S ribosomal protein L2P
1083	 40.74	-1	984646..984861	+	71	119872603	rps17E	Pisl_1095	-	30S ribosomal protein S17e
1084	 46.67	0	984865..985554	+	229	119872604	-	Pisl_1096	-	peptidylprolyl isomerase, FKBP-type
1085	 44.28	0	985669..986271	+	200	119872605	-	Pisl_1097	-	proteasome endopeptidase complex
1086	 48.80	0	986441..987694	+	417	119872606	-	Pisl_1098	-	phosphopyruvate hydratase
1087	 39.73	-1	988446..988883	+	145	119872607	-	Pisl_1100	-	ModE family transcriptional regulator
1088	 45.12	0	988868..989800	-	310	119872608	-	Pisl_1101	-	putative molybdenum cofactor biosynthesis protein A
1089	 42.68	0	989891..991345	+	484	119872609	-	Pisl_1102	-	serine/threonine protein kinase
1090	 41.83	0	991345..991803	+	152	119872610	-	Pisl_1103	-	FHA domain-containing protein
1091	 45.03	0	991908..992531	+	207	119872611	rps2P	Pisl_1104	-	30S ribosomal protein S2
1092	 46.22	0	992531..993376	+	281	119872612	-	Pisl_1105	-	hypothetical protein
1093	 46.92	0	993373..994719	-	448	119872613	-	Pisl_1106	-	pyruvate kinase
1094	 52.83	0	994716..996638	-	640	119872614	-	Pisl_1107	-	beta-lactamase domain-containing protein
1095	 55.91	0	996669..998090	+	473	119872615	-	Pisl_1108	-	cysteinyl-tRNA synthetase
1096	 42.55	0	998102..1001650	-	1182	119872616	-	Pisl_1109	-	hypothetical protein
1097	 44.65	0	1001698..1003614	+	638	119872617	-	Pisl_1110	-	hypothetical protein
1098	 48.49	0	1003653..1011623	+	2656	119872618	-	Pisl_1111	-	hypothetical protein
1099	 53.94	0	1011686..1012282	+	198	119872619	-	Pisl_1112	-	AMMECR1 domain-containing protein
1100	 57.82	+1	1012312..1013091	+	259	119872620	-	Pisl_1113	-	hypothetical protein
1101	 51.98	0	1013072..1013602	+	176	119872621	-	Pisl_1114	-	putative adenylyl cyclase CyaB
1102	 49.52	0	1013610..1015364	+	584	119872622	-	Pisl_1115	-	ATP-dependent DNA ligase
1103	 46.34	0	1015352..1015843	-	163	119872623	-	Pisl_1116	-	hypothetical protein
1104	 48.26	0	1015885..1016802	+	305	119872624	-	Pisl_1117	-	ribokinase-like domain-containing protein
1105	 45.91	0	1016822..1017163	+	113	119872625	-	Pisl_1118	-	hypothetical protein
1106	 45.28	0	1017160..1017837	+	225	119872626	-	Pisl_1119	-	nucleotidyl transferase
1107	 44.63	0	1017868..1018593	+	241	119872627	-	Pisl_1120	-	hypothetical protein
1108	 42.34	0	1018590..1019144	+	184	119872628	-	Pisl_1121	-	hypothetical protein
1109	 47.04	0	1019122..1019493	-	123	119872629	-	Pisl_1122	-	hypothetical protein
1110	 49.34	0	1019519..1020580	+	353	119872630	-	Pisl_1123	-	hypothetical protein
1111	 43.73	0	1020943..1021221	-	92	119872631	-	Pisl_1124	-	hypothetical protein
1112	 49.28	0	1021197..1022093	-	298	119872632	-	Pisl_1125	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1113	 40.30	-1	1022087..1022488	-	133	119872633	-	Pisl_1126	-	hypothetical protein
1114	 43.91	0	1022814..1023125	+	103	119872634	-	Pisl_1127	-	50S ribosomal protein L14e
1115	 48.43	0	1023122..1024108	+	328	119872635	-	Pisl_1128	-	H/ACA RNA-protein complex component Cbf5p
1116	 49.32	0	1024149..1024442	+	97	119872636	-	Pisl_1129	-	hypothetical protein
1117	 46.31	0	1024439..1024939	+	166	119872637	-	Pisl_1130	-	hypothetical protein
1118	 41.34	-1	1025299..1025760	+	153	119872638	-	Pisl_1131	-	hypothetical protein
1119	 47.65	0	1025879..1026814	+	311	119872639	-	Pisl_1132	-	oxidoreductase domain-containing protein
1120	 45.25	0	1027068..1027604	+	178	119872640	-	Pisl_1133	-	hypothetical protein
1121	 47.31	0	1027591..1028184	-	197	119872641	-	Pisl_1134	-	abortive infection protein
1122	 48.45	0	1028202..1028684	+	160	119872642	-	Pisl_1135	-	hypothetical protein
1123	 45.35	0	1028665..1029513	-	282	119872643	-	Pisl_1136	-	competence damage-inducible protein A
1124	 50.35	0	1029595..1030452	-	285	119872644	-	Pisl_1137	-	hypothetical protein
1125	 47.74	0	1030473..1030715	-	80	119872645	-	Pisl_1138	-	hypothetical protein
1126	 54.95	0	1030712..1030984	-	90	119872646	-	Pisl_1139	-	hypothetical protein
1127	 46.49	0	1031229..1031897	-	222	119872647	-	Pisl_1140	-	HhH-GPD family protein
1128	 40.65	-1	1031942..1032433	+	163	119872648	-	Pisl_1141	-	hypothetical protein
1129	 46.07	0	1032703..1033479	+	258	119872649	-	Pisl_1142	-	hypothetical protein
1130	 44.44	0	1033508..1034983	+	491	119872650	-	Pisl_1143	-	carboxypeptidase Taq
1131	 50.70	0	1034980..1035618	-	212	119872651	-	Pisl_1144	-	hypothetical protein
1132	 44.44	0	1035659..1036126	+	155	119872652	-	Pisl_1145	-	phosphopantetheine adenylyltransferase
1133	 47.29	0	1036106..1037416	-	436	119872653	-	Pisl_1146	-	hypothetical protein
1134	 44.54	0	1037521..1037868	-	115	119872654	-	Pisl_1147	-	hypothetical protein
1135	 44.32	0	1038076..1038348	+	90	119872655	-	Pisl_1148	-	hypothetical protein
1136	 46.67	0	1038335..1039159	-	274	119872656	-	Pisl_1149	-	hypothetical protein
1137	 50.19	0	1039304..1040092	+	262	119872657	-	Pisl_1150	-	prephenate dehydratase
1138	 50.26	0	1040055..1042175	-	706	119872658	-	Pisl_1151	-	DEAD/DEAH box helicase domain-containing protein
1139	 53.84	0	1042203..1044245	-	680	119872659	-	Pisl_1152	-	MCM family protein
1140	 55.99	0	1045554..1046621	-	355	119872660	-	Pisl_1153	-	transposase, IS605 OrfB
1141	 52.96	0	1047118..1047489	+	123	119872661	-	Pisl_1154	-	hypothetical protein
1142	 56.22	0	1047507..1047908	+	133	119872662	-	Pisl_1155	-	hypothetical protein
1143	 65.68	+2	1047953..1050493	+	846	119872663	-	Pisl_1156	-	hypothetical protein
1144	 51.59	0	1050555..1052192	+	545	119872664	-	Pisl_1157	-	hypothetical protein
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.