IslandPathversion 1.0

IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.88 STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
936	 35.99	-1	873517..873930	-	137	18977273	-	PF0901	-	hypothetical protein
937	 36.04	-1	874193..875188	+	331	18977274	-	PF0902	-	hypothetical protein
938	 42.31	0	875553..876521	+	322	18977275	-	PF0903	-	hypothetical protein
939	 40.11	0	876522..877259	+	245	33359525	-	PF0904	-	N-glycosylase/DNA lyase
940	 41.83	0	877515..878279	+	254	18977277	-	PF0905	-	putative ABC transporter
941	 39.15	0	878282..879742	+	486	18977278	-	PF0906	-	hypothetical protein
942	 40.98	0	879754..880080	+	108	18977279	-	PF0907	-	hypothetical protein
943	 43.82	0	880081..880929	+	282	33359526	-	PF0908	-	hypothetical protein
944	 40.43	0	880926..881672	-	248	18977281	-	PF0909	-	ferric enterobactin transport ATP-binding protein
945	 43.70	0	881669..882748	-	359	18977282	-	PF0910	-	iron (III) ABC transporter, permease protein
946	 41.16	0	882732..883817	-	361	18977283	-	PF0911	-	iron (III) ABC transporter
947	 42.74	0	883814..883930	-	38	18977284	-	PF0912	-	hypothetical protein
948	 42.33	0	884008..884385	-	125	18977285	-	PF0913	-	hypothetical protein
949	 36.94	-1	884391..884501	-	36	18977286	-	PF0914	-	hypothetical protein
950	 41.88	0	884623..885336	-	237	18977287	-	PF0915	-	hypothetical protein
951	 44.36	0	885394..885783	-	129	18977288	-	PF0916	-	hypothetical protein
952	 43.65	0	885793..886296	-	167	18977289	-	PF0917	-	hypothetical protein
953	 41.07	0	886345..887145	+	266	18977290	truA	PF0918	-	tRNA pseudouridine synthase A
954	 39.27	0	887164..887382	+	72	18977291	-	PF0919	-	hypothetical protein
955	 51.64	+2	887281..887952	-	223	18977292	-	PF0920	-	nucleotidyltransferase
956	 40.92	0	888055..888924	-	289	18977293	-	PF0921	-	putative ABC transporter
957	 40.27	0	888936..889742	-	268	18977294	-	PF0922	-	hypothetical protein
958	 41.61	0	889729..890211	-	160	18977295	-	PF0923	-	hypothetical protein
959	 37.30	0	890208..890636	-	142	18977296	-	PF0924	-	hypothetical protein
960	 37.21	0	890633..891484	-	283	18977297	-	PF0925	-	heme biosynthesis protein
961	 45.18	+1	891798..892025	-	75	18977298	-	PF0926	-	hypothetical protein
962	 51.26	+2	892432..892866	-	144	33359527	-	PF0927	-	hypothetical protein
963	 41.51	0	893178..893336	+	52	18977300	-	PF0928	-	hypothetical protein
964	 39.07	0	893390..893860	+	156	18977301	-	PF0929	-	hypothetical protein
965	 44.40	0	893960..894655	+	231	18977302	-	PF0930	-	hypothetical protein
966	 42.59	0	894645..895130	-	161	18977303	ndk	PF0931	-	nucleoside diphosphate kinase
967	 41.18	0	895117..895371	-	84	18977304	-	PF0932	-	hypothetical protein
968	 41.88	0	895395..897290	-	631	18977305	-	PF0933	-	DNA repair helicase rad3, putative
969	 42.89	0	897630..898016	+	128	18977306	-	PF0934	-	hypothetical protein
970	 45.66	+1	898325..900019	+	564	18977307	-	PF0935	-	acetolactate synthase
971	 46.45	+1	900021..901019	+	332	18977308	-	PF0936	-	ketol-acid reductoisomerase
972	 44.13	0	901054..902553	+	499	18977309	-	PF0937	-	2-isopropylmalate synthase
973	 45.18	+1	902558..903832	+	424	18977310	-	PF0938	-	3-isopropylmalate dehydratase large subunit
974	 45.05	+1	903829..904323	+	164	18977311	leuD	PF0939	-	3-isopropylmalate dehydratase small subunit
975	 44.10	0	904320..905387	+	355	18977312	-	PF0940	-	3-isopropylmalate dehydrogenase 2
976	 45.69	+1	905368..906945	+	525	18977313	-	PF0941	-	alpha-isopropylmalate/homocitrate synthase family transferase
977	 45.11	+1	906942..908597	+	551	18977314	-	PF0942	-	dihydroxy-acid dehydratase
978	 39.29	0	908759..909094	+	111	18977315	-	PF0943	-	hypothetical protein
979	 38.75	0	909057..909425	+	122	18977316	-	PF0944	-	hypothetical protein
980	 48.28	+1	909426..909833	-	135	18977317	-	PF0945	-	hypothetical protein
981	 45.50	+1	909695..910639	+	314	18977318	-	PF0946	-	transposase
982	 42.66	0	910599..911381	-	260	33359528	-	PF0947	-	hypothetical protein
983	 37.91	0	911973..912758	+	261	18977320	-	PF0948	-	hypothetical protein
984	 36.13	-1	912771..913127	+	118	18977321	-	PF0949	-	hypothetical protein
985	 41.24	0	913334..913510	+	58	18977322	-	PF0950	-	hypothetical protein
986	 38.79	0	913536..913865	+	109	18977323	-	PF0951	-	hypothetical protein
987	 40.85	0	913939..915003	+	354	18977324	-	PF0952	-	hypothetical protein
988	 40.23	0	914959..915828	-	289	18977325	-	PF0953	-	hypothetical protein
989	 38.75	0	915933..916301	-	122	18977326	-	PF0954	-	hypothetical protein
990	 36.02	-1	916398..917366	-	322	18977327	-	PF0955	-	hypothetical protein
991	 37.62	0	917540..918403	-	287	18977328	-	PF0956	-	hypothetical protein
992	 39.78	0	918553..918738	-	61	18977329	-	PF0957	-	hypothetical protein
993	 37.60	0	918903..919277	-	124	18977330	-	PF0958	-	hypothetical protein
994	 44.30	0	919736..919963	-	75	33359529	-	PF0958.3n	-	hypothetical protein
995	 44.09	0	920180..920365	-	61	18977331	-	PF0959	-	hypothetical protein
996	 41.30	0	920401..920739	-	112	18977332	-	PF0960	-	hypothetical protein
997	 34.25	-1	921062..921280	-	72	18977333	-	PF0961	-	hypothetical protein
998	 36.80	-1	921442..921960	-	172	18977334	-	PF0962	-	hypothetical protein
999	 43.64	0	922036..924549	-	837	18977335	-	PF0963	-	cell division protein CDC48
1000	 39.41	0	924554..925327	-	257	33359530	-	PF0964	-	hypothetical protein
1001	 46.79	+1	925374..926369	-	331	18977337	-	PF0965	-	pyruvate ferredoxin oxidoreductase subunit beta
1002	 44.25	0	926380..927570	-	396	18977338	porA	PF0966	-	pyruvate ferredoxin oxidoreductase subunit alpha
1003	 40.57	0	927581..927898	-	105	18977339	porD	PF0967	-	pyuvate ferredoxin oxidoreductase subunit delta
1004	 44.34	0	927947..928882	-	311	18977340	-	PF0968	-	2-ketoisovalerate ferredoxin oxidoreductase subunit beta
1005	 43.38	0	928888..930072	-	394	18977341	vorA	PF0969	-	2-ketoisovalerate ferredoxin oxidoreductase subunit alpha
1006	 38.36	0	930085..930402	-	105	18977342	vorD	PF0970	-	2-ketoisovalerate ferredoxin oxidoreductase subunit delta
1007	 42.29	0	930439..930996	-	185	18977343	-	PF0971	-	pyruvate ferredoxin oxidoreductase subunit gamma
1008	 44.54	0	931235..932287	+	350	18977344	-	PF0972	-	hypothetical protein
1009	 44.06	0	932256..933467	+	403	18977345	-	PF0973	-	acetyl-CoA acetyltransferase
1010	 41.85	0	933469..933879	+	136	18977346	-	PF0974	-	hypothetical protein
1011	 37.80	0	933872..934363	+	163	33359531	-	PF0975	-	hypothetical protein
1012	 34.94	-1	934365..934613	+	82	18977348	-	PF0976	-	putative transmembrane protein
1013	 40.57	0	934610..935203	+	197	18977349	-	PF0977	-	hypothetical protein
1014	 35.66	-1	935205..936191	+	328	18977350	-	PF0978	-	hypothetical protein
1015	 37.30	0	936303..936680	+	125	18977351	-	PF0979	-	hypothetical protein
1016	 40.76	0	936677..937363	+	228	18977352	-	PF0980	-	putative aspartate racemase
1017	 38.52	0	937611..938864	+	417	18977353	-	PF0981	-	efflux transport protein
1018	 36.65	-1	938821..939393	-	190	33359532	-	PF0982	-	hypothetical protein
1019	 40.00	0	939418..940167	-	249	18977355	-	PF0983	-	DNA polymerase sliding clamp
1020	 36.67	-1	940157..940336	-	59	18977356	-	PF0984	-	hypothetical protein
1021	 39.02	0	940306..941361	+	351	18977357	-	PF0985	-	DNA-directed RNA polymerase subunit M
1022	 41.74	0	940318..940650	-	110	18977358	-	PF0986	-	DNA-directed RNA polymerase subunit M
1023	 38.54	0	941348..941923	+	191	18977359	-	PF0987	-	hypothetical protein
1024	 37.72	0	941910..942548	+	212	18977360	-	PF0988	-	hypothetical protein
1025	 39.87	0	942767..944266	+	499	18977361	pheS	PF0989	-	phenylalanyl-tRNA synthetase subunit alpha
1026	 40.57	0	944277..945947	+	556	18977362	pheT	PF0990	-	phenylalanyl-tRNA synthetase subunit beta
1027	 43.65	0	946117..947163	-	348	18977363	tdh	PF0991	-	L-threonine 3-dehydrogenase
1028	 42.80	0	947243..948172	-	309	18977364	-	PF0992	-	hypothetical protein
1029	 37.92	0	948183..949250	-	355	18977365	-	PF0993	-	hypothetical protein
1030	 40.11	0	949263..952715	-	1150	18977366	-	PF0994	-	type II secretion system protein
1031	 35.91	-1	952697..953626	-	309	18977367	-	PF0995	-	hypothetical protein
1032	 38.79	0	953631..955040	-	469	18977368	-	PF0996	-	hypothetical protein
1033	 40.48	0	955166..955501	+	111	18977369	-	PF0997	-	hypothetical protein
1034	 38.30	0	955455..956522	+	355	18977370	-	PF0998	-	GTP-binding protein
1035	 41.67	0	956523..956642	-	39	18977371	-	PF0999	-	oligopeptide transport system permease protein appc, c-terminal fragment
40.88	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.