IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
899	 42.51	0	841620..842861	+	413	18977240	-	PF0868	-	NDP-sugar synthase
900	 39.86	0	842922..844238	+	438	18977241	aspC	PF0869	-	aspartyl-tRNA synthetase
901	 41.25	0	844239..846032	-	597	18977242	-	PF0870	-	hypothetical protein
902	 36.03	-1	846032..846439	-	135	33359519	-	PF0871	-	hypothetical protein
903	 40.21	0	846441..846818	-	125	18977244	-	PF0872	-	hypothetical protein
904	 36.67	-1	846874..847023	-	49	18977245	-	PF0873	-	hypothetical protein
905	 41.58	0	847018..848157	+	379	18977246	-	PF0874	-	membrane dipeptidase
906	 41.32	0	848154..849017	+	287	18977247	-	PF0875	-	hypothetical protein
907	 45.81	+1	848995..849579	-	194	18977248	-	PF0876	-	50S ribosomal protein L15e
908	 40.74	0	849733..849840	+	35	33359520	-	PF0876.1n	-	hypothetical protein
909	 51.35	+2	849792..849902	-	36	18977249	-	PF0877	-	hypothetical protein
910	 41.27	0	850265..850453	+	62	18977250	-	PF0878	-	hypothetical protein
911	 43.18	0	850422..850553	+	43	18977251	-	PF0879	-	hypothetical protein
912	 47.29	+1	850576..851979	+	467	18977252	-	PF0880	-	DEXX-box atpase
913	 40.25	0	852173..852880	-	235	18977253	-	PF0881	-	putative ABC transporter
914	 40.22	0	852867..853331	-	154	18977254	-	PF0882	-	hypothetical protein
915	 36.11	-1	853328..854083	-	251	18977255	-	PF0883	-	hypothetical protein
916	 37.07	-1	854080..855123	-	347	18977256	-	PF0884	-	hypothetical protein
917	 44.44	0	855891..856079	+	62	33359521	-	PF0884.1n	-	hypothetical protein
918	 41.50	0	856232..856378	+	48	18977257	-	PF0885	-	hypothetical protein
919	 43.73	0	856515..857495	+	326	33359522	-	PF0886	-	hypothetical protein
920	 42.42	0	857480..858403	+	307	18977259	-	PF0887	-	hypothetical protein
921	 42.48	0	858529..859392	+	287	18977260	-	PF0888	-	hypothetical protein
922	 39.26	0	859406..860383	-	325	18977261	-	PF0889	-	hypothetical protein
923	 43.90	0	860619..863522	+	967	18977262	leuS	PF0890	-	leucyl-tRNA synthetase
924	 42.48	0	863754..864857	+	367	18977263	-	PF0891	-	sulfhydrogenase beta subunit
925	 46.99	+1	864854..865732	+	292	18977264	-	PF0892	-	cytochrome-c3 hydrogenase subunit gamma
926	 42.88	0	865743..866528	+	261	18977265	-	PF0893	-	sulfhydrogenase delta subunit
927	 45.45	+1	866525..867811	+	428	18977266	-	PF0894	-	sulfhydrogenase alpha subunit
928	 36.39	-1	867808..868428	-	206	18977267	-	PF0895	-	putative ABC transporter
929	 34.27	-1	868425..868853	-	142	18977268	-	PF0896	-	hypothetical protein
930	 34.47	-1	868846..869988	-	380	18977269	-	PF0897	-	hypothetical protein
931	 34.47	-1	869994..870257	-	87	33359523	-	PF0897.1n	-	hypothetical protein
932	 44.44	0	870647..871348	-	233	18977270	-	PF0898	-	transposase
933	 38.89	0	871468..871755	+	95	18977271	-	PF0899	-	hypothetical protein
934	 32.72	-2	872110..873090	+	326	18977272	-	PF0900	-	hypothetical protein
935	 36.36	-1	873213..873410	-	65	33359524	-	PF0900.1n	-	hypothetical protein
936	 35.99	-1	873517..873930	-	137	18977273	-	PF0901	-	hypothetical protein
937	 36.04	-1	874193..875188	+	331	18977274	-	PF0902	-	hypothetical protein
938	 42.31	0	875553..876521	+	322	18977275	-	PF0903	-	hypothetical protein
939	 40.11	0	876522..877259	+	245	33359525	-	PF0904	-	N-glycosylase/DNA lyase
940	 41.83	0	877515..878279	+	254	18977277	-	PF0905	-	putative ABC transporter
941	 39.15	0	878282..879742	+	486	18977278	-	PF0906	-	hypothetical protein
942	 40.98	0	879754..880080	+	108	18977279	-	PF0907	-	hypothetical protein
943	 43.82	0	880081..880929	+	282	33359526	-	PF0908	-	hypothetical protein
944	 40.43	0	880926..881672	-	248	18977281	-	PF0909	-	ferric enterobactin transport ATP-binding protein
945	 43.70	0	881669..882748	-	359	18977282	-	PF0910	-	iron (III) ABC transporter, permease protein
946	 41.16	0	882732..883817	-	361	18977283	-	PF0911	-	iron (III) ABC transporter
947	 42.74	0	883814..883930	-	38	18977284	-	PF0912	-	hypothetical protein
948	 42.33	0	884008..884385	-	125	18977285	-	PF0913	-	hypothetical protein
949	 36.94	-1	884391..884501	-	36	18977286	-	PF0914	-	hypothetical protein
950	 41.88	0	884623..885336	-	237	18977287	-	PF0915	-	hypothetical protein
951	 44.36	0	885394..885783	-	129	18977288	-	PF0916	-	hypothetical protein
952	 43.65	0	885793..886296	-	167	18977289	-	PF0917	-	hypothetical protein
953	 41.07	0	886345..887145	+	266	18977290	truA	PF0918	-	tRNA pseudouridine synthase A
954	 39.27	0	887164..887382	+	72	18977291	-	PF0919	-	hypothetical protein
955	 51.64	+2	887281..887952	-	223	18977292	-	PF0920	-	nucleotidyltransferase
956	 40.92	0	888055..888924	-	289	18977293	-	PF0921	-	putative ABC transporter
957	 40.27	0	888936..889742	-	268	18977294	-	PF0922	-	hypothetical protein
958	 41.61	0	889729..890211	-	160	18977295	-	PF0923	-	hypothetical protein
959	 37.30	0	890208..890636	-	142	18977296	-	PF0924	-	hypothetical protein
960	 37.21	0	890633..891484	-	283	18977297	-	PF0925	-	heme biosynthesis protein
961	 45.18	+1	891798..892025	-	75	18977298	-	PF0926	-	hypothetical protein
962	 51.26	+2	892432..892866	-	144	33359527	-	PF0927	-	hypothetical protein
963	 41.51	0	893178..893336	+	52	18977300	-	PF0928	-	hypothetical protein
964	 39.07	0	893390..893860	+	156	18977301	-	PF0929	-	hypothetical protein
965	 44.40	0	893960..894655	+	231	18977302	-	PF0930	-	hypothetical protein
966	 42.59	0	894645..895130	-	161	18977303	ndk	PF0931	-	nucleoside diphosphate kinase
967	 41.18	0	895117..895371	-	84	18977304	-	PF0932	-	hypothetical protein
968	 41.88	0	895395..897290	-	631	18977305	-	PF0933	-	DNA repair helicase rad3, putative
969	 42.89	0	897630..898016	+	128	18977306	-	PF0934	-	hypothetical protein
970	 45.66	+1	898325..900019	+	564	18977307	-	PF0935	-	acetolactate synthase
971	 46.45	+1	900021..901019	+	332	18977308	-	PF0936	-	ketol-acid reductoisomerase
972	 44.13	0	901054..902553	+	499	18977309	-	PF0937	-	2-isopropylmalate synthase
973	 45.18	+1	902558..903832	+	424	18977310	-	PF0938	-	3-isopropylmalate dehydratase large subunit
974	 45.05	+1	903829..904323	+	164	18977311	leuD	PF0939	-	3-isopropylmalate dehydratase small subunit
975	 44.10	0	904320..905387	+	355	18977312	-	PF0940	-	3-isopropylmalate dehydrogenase 2
976	 45.69	+1	905368..906945	+	525	18977313	-	PF0941	-	alpha-isopropylmalate/homocitrate synthase family transferase
977	 45.11	+1	906942..908597	+	551	18977314	-	PF0942	-	dihydroxy-acid dehydratase
978	 39.29	0	908759..909094	+	111	18977315	-	PF0943	-	hypothetical protein
979	 38.75	0	909057..909425	+	122	18977316	-	PF0944	-	hypothetical protein
980	 48.28	+1	909426..909833	-	135	18977317	-	PF0945	-	hypothetical protein
981	 45.50	+1	909695..910639	+	314	18977318	-	PF0946	-	transposase
982	 42.66	0	910599..911381	-	260	33359528	-	PF0947	-	hypothetical protein
983	 37.91	0	911973..912758	+	261	18977320	-	PF0948	-	hypothetical protein
984	 36.13	-1	912771..913127	+	118	18977321	-	PF0949	-	hypothetical protein
985	 41.24	0	913334..913510	+	58	18977322	-	PF0950	-	hypothetical protein
986	 38.79	0	913536..913865	+	109	18977323	-	PF0951	-	hypothetical protein
987	 40.85	0	913939..915003	+	354	18977324	-	PF0952	-	hypothetical protein
988	 40.23	0	914959..915828	-	289	18977325	-	PF0953	-	hypothetical protein
989	 38.75	0	915933..916301	-	122	18977326	-	PF0954	-	hypothetical protein
990	 36.02	-1	916398..917366	-	322	18977327	-	PF0955	-	hypothetical protein
991	 37.62	0	917540..918403	-	287	18977328	-	PF0956	-	hypothetical protein
992	 39.78	0	918553..918738	-	61	18977329	-	PF0957	-	hypothetical protein
993	 37.60	0	918903..919277	-	124	18977330	-	PF0958	-	hypothetical protein
994	 44.30	0	919736..919963	-	75	33359529	-	PF0958.3n	-	hypothetical protein
995	 44.09	0	920180..920365	-	61	18977331	-	PF0959	-	hypothetical protein
996	 41.30	0	920401..920739	-	112	18977332	-	PF0960	-	hypothetical protein
997	 34.25	-1	921062..921280	-	72	18977333	-	PF0961	-	hypothetical protein
998	 36.80	-1	921442..921960	-	172	18977334	-	PF0962	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.