IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
805	 44.59	0	767568..768269	+	233	18977152	-	PF0780	-	transposase
806	 39.57	0	768446..768862	+	138	18977153	-	PF0781	-	hypothetical protein
807	 43.03	0	769195..769524	+	109	18977154	-	PF0782	-	hypothetical protein
808	 52.13	+2	769551..770768	+	405	18977155	-	PF0783	-	hypothetical protein
809	 41.96	0	770736..771326	-	196	18977156	-	PF0784	-	hypothetical protein
810	 44.59	0	771392..772093	+	233	18977157	-	PF0785	-	transposase
811	 39.18	0	772203..772664	-	153	33359509	-	PF0785.2n	-	hypothetical protein
812	 42.70	0	772786..773244	+	152	33359510	-	PF0785.3n	-	hypothetical protein
813	 44.27	0	772789..773660	+	290	33359508	-	PF0786	-	transposase
814	 37.44	0	773641..774030	-	129	18977159	-	PF0787	-	hypothetical protein
815	 34.70	-1	774027..774686	-	219	18977160	-	PF0788	-	glycosyl transferase
816	 33.97	-1	774691..775161	-	156	18977161	-	PF0789	-	hypothetical protein
817	 34.75	-1	775174..776934	-	586	18977162	-	PF0790	-	hypothetical protein
818	 37.01	-1	776880..778049	-	389	18977163	-	PF0791	-	hypothetical protein
819	 35.44	-1	778050..779660	-	536	18977164	-	PF0792	-	hypothetical protein
820	 33.33	-2	779679..779924	-	81	18977165	-	PF0793	-	hypothetical protein
821	 36.86	-1	779986..781062	-	358	18977166	-	PF0794	-	UDP-n-acetylglucosamine 2-epimerase
822	 34.83	-1	781059..782261	-	400	18977167	-	PF0795	-	capsular polysaccharide biosynthesis protein
823	 36.53	-1	782274..782774	-	166	18977168	-	PF0796	-	galactoside o-acetyltransferase
824	 33.33	-2	782783..783826	-	347	18977169	-	PF0797	-	hypothetical protein
825	 35.75	-1	783839..784747	-	302	18977170	-	PF0798	-	glycosyl transferase
826	 39.52	0	784759..784968	-	69	33359511	-	PF0799	-	hypothetical protein
827	 43.92	0	785140..785879	+	246	33359512	-	PF0800	-	transposase
828	 43.40	0	785149..785595	+	148	18977173	-	PF0801	-	hypothetical protein
829	 43.46	0	786027..786431	-	134	18977174	-	PF0802	-	hypothetical protein
830	 47.79	+1	786428..787672	-	414	18977175	-	PF0803	-	hypothetical protein
831	 49.35	+2	787669..788598	-	309	18977176	-	PF0804	-	methanol dehydrogenase regulator
832	 43.42	0	788600..788956	-	118	18977177	-	PF0805	-	hypothetical protein
833	 44.08	0	788944..789585	-	213	18977178	-	PF0806	-	hypothetical protein
834	 43.10	0	789582..791270	-	562	18977179	-	PF0807	-	hypothetical protein
835	 45.59	+1	791326..792084	+	252	18977180	-	PF0808	-	hypothetical protein
836	 44.03	0	792075..792317	+	80	18977181	-	PF0809	-	hypothetical protein
837	 45.35	+1	792435..793424	+	329	18977182	-	PF0810	-	hypothetical protein
838	 40.36	0	793480..793920	-	146	18977183	-	PF0811	-	hypothetical protein
839	 36.21	-1	794106..794522	-	138	18977184	-	PF0812	-	hypothetical protein
840	 38.53	0	794519..794749	-	76	18977185	-	PF0813	-	hypothetical protein
841	 35.38	-1	794974..795462	+	162	18977186	-	PF0814	-	hypothetical protein
842	 34.11	-1	795782..795910	+	42	18977187	-	PF0815	-	hypothetical protein
843	 47.97	+1	796206..797018	-	270	18977188	-	PF0816	-	hypothetical protein
844	 44.59	0	797137..797838	-	233	18977189	-	PF0817	-	transposase
845	 45.34	+1	798141..799148	-	335	18977190	-	PF0818	-	aminohydrolase
846	 48.81	+2	799201..799452	-	83	18977191	-	PF0819	-	50S ribosomal protein L14e
847	 46.63	+1	799453..800031	-	192	18977192	-	PF0820	-	cytidylate kinase
848	 49.63	+2	800043..800312	-	89	18977193	rpl34e	PF0821	-	50S ribosomal protein L34e
849	 42.68	0	800391..800636	+	81	18977194	-	PF0822	-	hypothetical protein
850	 43.36	0	800694..802109	+	471	18977195	-	PF0823	-	hypothetical protein
851	 45.42	+1	802087..803559	+	490	18977196	-	PF0824	-	hypothetical protein
852	 45.76	+1	803543..805393	-	616	18977197	-	PF0825	-	prolyl endopeptidase
853	 41.73	0	805426..806532	-	368	18977198	-	PF0826	-	putative transport membrane protein
854	 42.76	0	806556..807785	-	409	18977199	-	PF0827	-	putative RNA methyltransferase
855	 43.77	0	807782..808471	-	229	18977200	-	PF0828	-	n-type ATP pyrophosphatase superfamily protein
856	 50.95	+2	808520..808729	-	69	33359513	-	PF0829	-	hypothetical protein
857	 42.12	0	808750..809136	-	128	18977202	-	PF0830	-	hypothetical protein
858	 41.44	0	809133..809909	-	258	18977203	-	PF0831	-	hypothetical protein
859	 46.10	+1	810182..810322	-	46	18977204	-	PF0832	-	hypothetical protein
860	 43.02	0	810368..810625	+	85	18977205	-	PF0833	-	low temperature requirement C - like protein
861	 43.92	0	810684..811382	-	232	18977206	-	PF0834	-	hypothetical protein
862	 43.76	0	811379..812260	-	293	18977207	-	PF0835	-	daunorubicin resistance ATP-binding protein drrA
863	 40.17	0	812605..813072	+	155	18977208	-	PF0836	-	cobalamin synthase
864	 38.33	0	813182..813301	+	39	18977209	-	PF0837	-	cobalamin (5'-phosphate) synthase, c-terminal fragment
865	 38.49	0	813298..813549	+	83	18977210	-	PF0838	-	hypothetical protein
866	 35.43	-1	813549..813929	+	126	18977211	-	PF0839	-	hypothetical protein
867	 46.58	+1	814031..814264	+	77	18977212	-	PF0840	-	nucleotidyltransferase
868	 39.47	0	814270..814497	+	75	18977213	-	PF0841	-	hypothetical protein
869	 39.19	0	814548..814820	+	90	33359514	-	PF0841.1n	-	hypothetical protein
870	 41.82	0	814820..815149	+	109	18977214	-	PF0842	-	hypothetical protein
871	 42.62	0	815269..815505	+	78	33359515	-	PF0842.1n	-	hypothetical protein
872	 42.61	0	815721..816518	+	265	18977215	-	PF0843	-	hypothetical protein
873	 42.41	0	816519..817322	+	267	18977216	-	PF0844	-	hypothetical protein
874	 45.86	+1	817300..819183	-	627	18977217	-	PF0845	-	2-keto acid:ferredoxin oxidoreductase subunit alpha
875	 44.38	0	819107..820618	+	503	18977218	-	PF0846	-	hypothetical protein
876	 40.70	0	820589..821335	-	248	18977219	-	PF0847	-	hypothetical protein
877	 41.25	0	821386..822156	-	256	18977220	-	PF0848	-	hypothetical protein
878	 41.78	0	822427..823503	+	358	18977221	-	PF0849	-	hypothetical protein
879	 42.83	0	823526..824641	+	371	18977222	-	PF0850	-	hypothetical protein
880	 39.55	0	824720..825121	+	133	18977223	-	PF0851	-	iron-dependent repressor
881	 45.75	+1	825103..826431	-	442	18977224	-	PF0852	-	hypothetical protein
882	 46.12	+1	826577..827374	-	265	18977225	-	PF0853	-	5'-methylthioadenosine phosphorylase
883	 40.94	0	827661..828620	-	319	18977226	-	PF0854	-	endo-1,4-beta-glucanase b
884	 37.49	0	828617..829507	-	296	18977227	-	PF0855	-	hypothetical protein
885	 43.63	0	830358..831542	+	394	18977228	-	PF0856	-	isopentenyl pyrophosphate isomerase
886	 36.25	-1	831471..831710	-	79	33359516	-	PF0855.1n	-	hypothetical protein
887	 41.06	0	831703..833694	-	663	18977229	-	PF0857	-	ferrous iron transport protein b
888	 42.80	0	833697..833939	-	80	18977230	-	PF0858	-	hypothetical protein
889	 42.16	0	834030..834788	-	252	18977231	-	PF0859	-	hypothetical protein
890	 43.41	0	834828..835631	+	267	33359517	-	PF0860	-	btpA family protein
891	 43.56	0	835634..836992	+	452	18977233	-	PF0861	-	phospho-sugar mutase
892	 35.35	-1	837012..837209	-	65	33359518	-	PF0861.1n	-	hypothetical protein
893	 43.79	0	837611..838738	+	375	18977234	-	PF0862	-	tyrosyl-tRNA synthetase
894	 36.05	-1	838710..839225	-	171	18977235	-	PF0863	-	hypothetical protein
895	 36.40	-1	839232..839720	-	162	18977236	-	PF0864	-	AsnC family transcriptional regulator
896	 38.76	0	839724..840257	-	177	18977237	-	PF0865	-	aromatic acid decarboxylase
897	 38.77	0	840367..841176	+	269	18977238	-	PF0866	-	hypothetical protein
898	 34.94	-1	841173..841484	-	103	18977239	-	PF0867	-	hypothetical protein
899	 42.51	0	841620..842861	+	413	18977240	-	PF0868	-	NDP-sugar synthase
900	 39.86	0	842922..844238	+	438	18977241	aspC	PF0869	-	aspartyl-tRNA synthetase
901	 41.25	0	844239..846032	-	597	18977242	-	PF0870	-	hypothetical protein
902	 36.03	-1	846032..846439	-	135	33359519	-	PF0871	-	hypothetical protein
903	 40.21	0	846441..846818	-	125	18977244	-	PF0872	-	hypothetical protein
904	 36.67	-1	846874..847023	-	49	18977245	-	PF0873	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.