IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
708	 48.39	+2	699650..700021	+	123	18977061	-	PF0689	-	hypothetical protein
709	 51.76	+2	699847..700101	-	84	18977062	-	PF0690	-	hypothetical protein
710	 52.97	+2	700151..700537	-	128	18977063	-	PF0691	-	hypothetical protein
711	 52.80	+2	700741..702081	+	446	161484713	-	PF0692	-	hydroxylamine reductase
712	 46.12	+1	702106..702582	-	158	18977065	-	PF0693	-	hypothetical protein
713	 52.38	+2	702693..703868	+	391	18977066	-	PF0694	-	flavoprotein
714	 49.16	+2	703783..705210	+	475	18977067	-	PF0695	-	hypothetical protein
715	 44.55	0	705212..705523	+	103	18977068	-	PF0696	-	putative carbohydrate-binding protein
716	 46.42	+1	705602..705922	+	106	18977069	-	PF0697	-	multidrug resistance protein
717	 45.06	+1	705937..706533	+	198	18977070	-	PF0698	-	hypothetical protein
718	 42.14	0	706356..706775	-	139	18977071	-	PF0699	-	hypothetical protein
719	 51.96	+2	706759..706860	+	33	18977072	-	PF0700	-	x-pro dipeptidase, N-terminal fragment
720	 52.08	+2	706936..707079	+	47	18977073	-	PF0701	-	x-pro dipeptidase, N-terminal fragment
721	 53.83	+2	707219..707740	+	173	18977074	-	PF0702	-	x-pro dipeptidase
722	 55.27	+2	707755..708570	-	271	18977075	-	PF0703	-	hypothetical protein
723	 48.87	+2	708642..708995	-	117	18977076	-	PF0704	-	hypothetical protein
724	 54.53	+2	709009..710310	-	433	18977077	-	PF0705	-	cytochrome c-type biogenesis protein
725	 43.64	0	710372..710701	-	109	18977078	-	PF0706	-	hypothetical protein
726	 47.95	+1	710704..710922	-	72	33359500	-	PF0706.1n	-	hypothetical protein
727	 47.51	+1	710768..711451	+	227	18977079	-	PF0707	-	hypothetical protein
728	 55.12	+2	711275..712660	-	461	18977080	-	PF0708	-	hypothetical protein
729	 44.44	0	712700..712906	-	68	18977081	-	PF0709	-	hypothetical protein
730	 48.97	+2	712933..713175	-	80	18977082	-	PF0710	-	hypothetical protein
731	 56.16	+2	713303..713740	+	145	18977083	-	PF0711	-	hypothetical protein
732	 54.76	+2	713727..714104	+	125	18977084	-	PF0712	-	hypothetical protein
733	 53.55	+2	714059..714241	+	60	18977085	-	PF0713	-	hypothetical protein
734	 42.53	0	714293..714814	+	173	18977086	-	PF0714	-	hypothetical protein
735	 41.34	0	715081..715617	-	178	18977087	-	PF0715	-	NAD(P)H oxidase
736	 44.44	0	715679..716515	+	278	18977088	-	PF0716	-	3-hydroxyisobutyrate dehydrogenase
737	 47.05	+1	716903..717427	+	174	18977089	-	PF0717	-	putative methyltransferase
738	 51.88	+2	718003..718746	+	247	18977090	-	PF0718	-	hypothetical protein
739	 47.56	+1	718782..719006	+	74	18977091	-	PF0719	-	hypothetical protein
740	 55.25	+2	719033..719356	+	107	18977092	-	PF0720	-	hypothetical protein
741	 43.92	0	719708..720274	-	188	18977093	-	PF0721	-	hypothetical protein
742	 45.61	+1	720416..720985	+	189	18977094	-	PF0722	-	alkyl hydroperoxide reductase subunit c
743	 43.13	0	721320..722156	+	278	18977095	-	PF0723	-	hypothetical protein
744	 42.05	0	722255..722839	+	194	18977096	-	PF0724	-	hypothetical protein
745	 44.02	0	722875..723267	+	130	18977097	-	PF0725	-	hypothetical protein
746	 45.87	+1	723271..723645	+	124	18977098	-	PF0726	-	hypothetical protein
747	 51.14	+2	723739..723957	+	72	18977099	-	PF0727	-	hypothetical protein
748	 56.39	+2	724074..724715	+	213	18977100	-	PF0728	-	hypothetical protein
749	 56.30	+2	724719..725885	+	388	18977101	-	PF0729	-	mulitcopper oxidase domain-containing protein
750	 57.27	+2	725943..726857	+	304	18977102	-	PF0730	-	hypothetical protein
751	 55.95	+2	726955..727122	+	55	18977103	-	PF0731	-	copper-transporting atpase, p-type
752	 45.70	+1	727140..727325	-	61	33359501	-	PF0731.1n	-	hypothetical protein
753	 51.47	+2	727207..727956	-	249	18977104	-	PF0732	-	daunorubicin resistance ATP-binding protein
754	 44.93	+1	727982..728257	-	91	33359502	-	PF0732.2n	-	hypothetical protein
755	 40.84	0	728694..729599	-	301	18977105	-	PF0733	-	putative ABC transporter
756	 36.74	-1	729599..730714	-	371	18977106	-	PF0734	-	hypothetical protein
757	 40.73	0	730718..731434	-	238	18977107	-	PF0735	-	hypothetical protein
758	 40.46	0	731806..732366	-	186	18977108	-	PF0736	-	hypothetical protein
759	 50.77	+2	732387..732581	+	64	33359503	-	PF0736.1n	-	hypothetical protein
760	 46.67	+1	733209..733343	+	44	18977109	-	PF0737	-	hypothetical protein
761	 44.69	+1	733362..733907	-	181	18977110	-	PF0738	-	ubiquinone/menaquinone biosynthesis methyltransferase
762	 51.39	+2	734123..734482	+	119	33359504	-	PF0738.1n	-	hypothetical protein
763	 41.32	0	735280..736080	-	266	18977111	-	PF0739	-	AsnC family transcriptional regulator
764	 42.79	0	736025..738424	+	799	18977112	-	PF0740	-	heavy-metal transporting cpx-type atpase
765	 35.97	-1	738440..738742	+	100	18977113	-	PF0741	-	hypothetical protein
766	 44.38	0	738843..739367	+	174	18977114	-	PF0742	-	putative ferritin
767	 35.80	-1	739644..739886	+	80	18977115	-	PF0743	-	hypothetical protein
768	 34.97	-1	740116..741705	-	529	18977116	-	PF0744	-	ABC transporter
769	 38.99	0	742393..743028	-	211	18977117	-	PF0745	-	hypothetical protein
770	 40.49	0	743091..743900	+	269	18977118	-	PF0746	-	hypothetical protein
771	 40.48	0	743892..744968	-	358	18977119	-	PF0747	-	putative proline dipeptidase
772	 36.67	-1	745238..745387	+	49	18977120	-	PF0748	-	hypothetical protein
773	 40.17	0	745558..745674	+	38	18977121	-	PF0749	-	hypothetical protein
774	 46.43	+1	745739..746326	+	195	18977122	-	PF0750	-	putative NADH oxidase
775	 41.77	0	746296..747540	-	414	18977123	-	PF0751	-	flavoprotein
776	 37.56	0	747589..748038	-	149	18977124	-	PF0752	-	thioredoxin peroxidase
777	 42.10	0	748043..748909	-	288	18977125	-	PF0753	-	2-oxoacid ferredoxin oxidoreductase subunit beta
778	 41.16	0	748906..750618	-	570	18977126	-	PF0754	-	2-keto acid:ferredoxin oxidoreductase subunit alpha
779	 38.99	0	750669..752189	-	506	18977127	-	PF0755	-	non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase
780	 44.59	0	752343..753044	+	233	18977128	-	PF0756	-	transposase
781	 46.83	+1	753017..753142	-	41	18977129	-	PF0757	-	hypothetical protein
782	 43.59	0	753118..753390	-	90	18977130	-	PF0758	-	hypothetical protein
783	 42.45	0	753633..753950	+	105	18977131	-	PF0759	-	hypothetical protein
784	 45.06	+1	753911..754933	+	340	18977132	-	PF0760	-	hypothetical protein
785	 46.06	+1	755060..755389	-	109	18977133	-	PF0761	-	hypothetical protein
786	 39.89	0	755454..755819	-	121	33359505	-	PF0762	-	hypothetical protein
787	 42.36	0	755893..756036	+	47	18977135	-	PF0763	-	hypothetical protein
788	 44.98	+1	756033..757328	-	431	18977136	-	PF0764	-	DEXX-box atpase
789	 47.13	+1	757388..758677	-	429	18977137	-	PF0765	-	NDP-sugar dehydrogenase
790	 47.21	+1	758735..759685	-	316	18977138	-	PF0766	-	putative dehydrogenase
791	 46.03	+1	759691..760785	-	364	18977139	-	PF0767	-	pleiotropic regulatory protein degT
792	 45.53	+1	760795..761409	-	204	18977140	-	PF0768	-	acetyl / acyl transferase related protein
793	 37.46	0	761479..762375	-	298	18977141	-	PF0769	-	glycosyl transferase
794	 42.78	0	762368..763246	-	292	18977142	-	PF0770	-	glucose-1-phosphate uridylyltransferase
795	 43.82	0	763243..764415	-	390	18977143	-	PF0771	-	NDP-sugar dehydrogenase
796	 39.85	0	764538..764936	+	132	18977144	-	PF0772	-	hypothetical protein
797	 40.62	0	765121..765216	-	31	18977145	-	PF0773	-	hypothetical protein
798	 37.54	0	765189..765497	-	102	18977146	-	PF0774	-	hypothetical protein
799	 38.27	0	765537..765860	+	107	18977147	-	PF0775	-	hypothetical protein
800	 39.14	0	765933..766259	+	108	33359506	-	PF0776	-	hypothetical protein
801	 49.85	+2	766356..767003	+	215	18977149	-	PF0777	-	hypothetical protein
802	 38.81	0	766956..767174	-	72	33359507	-	PF0776.1n	-	hypothetical protein
803	 33.33	-2	767181..767360	-	59	18977150	-	PF0778	-	hypothetical protein
804	 43.70	0	767357..767491	-	44	18977151	-	PF0779	-	hypothetical protein
805	 44.59	0	767568..768269	+	233	18977152	-	PF0780	-	transposase
806	 39.57	0	768446..768862	+	138	18977153	-	PF0781	-	hypothetical protein
807	 43.03	0	769195..769524	+	109	18977154	-	PF0782	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.