IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
654	 42.30	0	652404..653117	-	237	18977011	-	PF0639	-	hypothetical protein
655	 40.36	0	653114..655090	-	658	18977012	-	PF0640	-	ATP-dependent RNA helicase, putative
656	 41.41	0	655060..655851	-	263	18977013	-	PF0641	-	hypothetical protein
657	 45.03	+1	655852..656877	-	341	33359495	-	PF0642	-	hypothetical protein
658	 43.80	0	656874..657236	-	120	18977015	-	PF0643	-	hypothetical protein
659	 33.33	-2	657364..658026	+	220	18977016	-	PF0644	-	hypothetical protein
660	 38.00	0	658148..658447	+	99	18977017	-	PF0645	-	hypothetical protein
661	 39.60	0	658780..659130	-	116	18977018	-	PF0646	-	hypothetical protein
662	 43.47	0	659796..661442	-	548	18977019	-	PF0647	-	heme biosynthesis protein
663	 41.03	0	661581..661931	+	116	18977020	-	PF0648	-	hypothetical protein
664	 35.47	-1	661966..662433	+	155	18977021	-	PF0649	-	hypothetical protein
665	 34.85	-1	662539..663525	-	328	18977022	-	PF0650	-	hypothetical protein
666	 37.63	0	663510..664277	-	255	18977023	-	PF0651	-	hypothetical protein
667	 39.81	0	664685..665872	+	395	18977024	-	PF0652	-	DEXX-box atpase
668	 36.19	-1	666025..666549	+	174	18977025	-	PF0653	-	hypothetical protein
669	 38.62	0	666751..667128	+	125	18977026	-	PF0654	-	hypothetical protein
670	 38.27	0	667119..668231	+	370	18977027	-	PF0655	-	serine/threonine-protein kinase
671	 35.83	-1	668273..668512	+	79	33359496	-	PF0655.1n	-	hypothetical protein
672	 38.35	0	668559..668957	-	132	18977028	-	PF0656	-	hypothetical protein
673	 39.13	0	668997..669893	-	298	18977029	-	PF0657	-	putative dihydrodipicolinate synthase
674	 38.98	0	669906..670082	-	58	18977030	-	PF0658	-	hypothetical protein
675	 40.16	0	670460..670957	-	165	18977031	-	PF0659	-	hypothetical protein
676	 52.56	+2	671023..671979	-	318	18977032	-	PF0660	-	iron-sulfur cluster binding protein
677	 54.97	+2	672050..672844	+	264	18977033	-	PF0661	-	hypothetical protein
678	 47.40	+1	672937..673128	+	63	18977034	-	PF0662	-	hypothetical protein
679	 51.61	+2	673193..674155	+	320	18977035	-	PF0663	-	hypothetical protein
680	 50.16	+2	674186..674494	+	102	18977036	-	PF0664	-	hypothetical protein
681	 40.74	0	674514..674864	-	116	18977037	-	PF0665	-	hypothetical protein
682	 41.43	0	674979..676337	-	452	18977038	-	PF0666	-	nol1-nop2-sun family putative nucleolar protein IV
683	 42.79	0	676584..677936	-	450	18977039	-	PF0667	-	adenylosuccinate lyase
684	 39.37	0	678104..678484	-	126	18977040	-	PF0668	-	hypothetical protein
685	 37.73	0	678575..679507	+	310	18977041	-	PF0669	-	hypothetical protein
686	 44.61	0	679716..681488	-	590	18977042	-	PF0670	-	putative ATPase RIL
687	 38.73	0	681560..681763	+	67	33359497	-	PF0670.1n	-	hypothetical protein
688	 46.72	+1	681821..683389	+	522	18977043	-	PF0671	-	methylmalonyl-coadecarboxylase, subunit alpha
689	 38.24	0	683370..683756	+	128	18977044	-	PF0672	-	hypothetical protein
690	 45.75	+1	683759..684193	+	144	18977045	-	PF0673	-	putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
691	 47.05	+1	684200..685402	+	400	18977046	-	PF0674	-	ion gradient-generating decarboxylase subunit beta
692	 39.68	0	685459..685710	+	83	18977047	-	PF0675	-	hypothetical protein
693	 46.03	+1	685707..686651	-	314	18977048	-	PF0676	-	carbamate kinase-like carbamoyl phosphate synthetase
694	 43.32	0	686783..688945	-	720	18977049	-	PF0677	-	ski2-like helicase
695	 44.30	0	688955..690103	-	382	18977050	-	PF0678	-	hypothetical protein
696	 40.03	0	690118..690789	+	223	18977051	-	PF0679	-	hypothetical protein
697	 46.38	+1	690764..691177	-	137	18977052	-	PF0680	-	hypothetical protein
698	 35.69	-1	691384..692061	+	225	18977053	-	PF0681	-	hypothetical protein
699	 39.89	0	692075..692257	-	60	18977054	-	PF0682	-	hypothetical protein
700	 41.52	0	692106..692276	+	56	18977055	-	PF0683	-	hypothetical protein
701	 37.89	0	692283..692699	+	138	18977056	-	PF0684	-	hypothetical protein
702	 40.93	0	693117..694037	-	306	18977057	-	PF0685	-	hypothetical protein
703	 37.62	0	694049..694468	-	139	18977058	-	PF0686	-	hypothetical protein
704	 40.61	0	694475..695326	-	283	18977059	-	PF0687	-	transcription initiation factor IIB chain b
705	 42.08	0	695694..695876	+	60	33359498	-	PF0687.1n	-	hypothetical protein
706	 32.83	-2	698653..698850	+	65	33359499	-	PF0687.2n	-	hypothetical protein
707	 45.91	+1	699079..699579	+	166	18977060	-	PF0688	-	subtilisin-like protease
708	 48.39	+2	699650..700021	+	123	18977061	-	PF0689	-	hypothetical protein
709	 51.76	+2	699847..700101	-	84	18977062	-	PF0690	-	hypothetical protein
710	 52.97	+2	700151..700537	-	128	18977063	-	PF0691	-	hypothetical protein
711	 52.80	+2	700741..702081	+	446	161484713	-	PF0692	-	hydroxylamine reductase
712	 46.12	+1	702106..702582	-	158	18977065	-	PF0693	-	hypothetical protein
713	 52.38	+2	702693..703868	+	391	18977066	-	PF0694	-	flavoprotein
714	 49.16	+2	703783..705210	+	475	18977067	-	PF0695	-	hypothetical protein
715	 44.55	0	705212..705523	+	103	18977068	-	PF0696	-	putative carbohydrate-binding protein
716	 46.42	+1	705602..705922	+	106	18977069	-	PF0697	-	multidrug resistance protein
717	 45.06	+1	705937..706533	+	198	18977070	-	PF0698	-	hypothetical protein
718	 42.14	0	706356..706775	-	139	18977071	-	PF0699	-	hypothetical protein
719	 51.96	+2	706759..706860	+	33	18977072	-	PF0700	-	x-pro dipeptidase, N-terminal fragment
720	 52.08	+2	706936..707079	+	47	18977073	-	PF0701	-	x-pro dipeptidase, N-terminal fragment
721	 53.83	+2	707219..707740	+	173	18977074	-	PF0702	-	x-pro dipeptidase
722	 55.27	+2	707755..708570	-	271	18977075	-	PF0703	-	hypothetical protein
723	 48.87	+2	708642..708995	-	117	18977076	-	PF0704	-	hypothetical protein
724	 54.53	+2	709009..710310	-	433	18977077	-	PF0705	-	cytochrome c-type biogenesis protein
725	 43.64	0	710372..710701	-	109	18977078	-	PF0706	-	hypothetical protein
726	 47.95	+1	710704..710922	-	72	33359500	-	PF0706.1n	-	hypothetical protein
727	 47.51	+1	710768..711451	+	227	18977079	-	PF0707	-	hypothetical protein
728	 55.12	+2	711275..712660	-	461	18977080	-	PF0708	-	hypothetical protein
729	 44.44	0	712700..712906	-	68	18977081	-	PF0709	-	hypothetical protein
730	 48.97	+2	712933..713175	-	80	18977082	-	PF0710	-	hypothetical protein
731	 56.16	+2	713303..713740	+	145	18977083	-	PF0711	-	hypothetical protein
732	 54.76	+2	713727..714104	+	125	18977084	-	PF0712	-	hypothetical protein
733	 53.55	+2	714059..714241	+	60	18977085	-	PF0713	-	hypothetical protein
734	 42.53	0	714293..714814	+	173	18977086	-	PF0714	-	hypothetical protein
735	 41.34	0	715081..715617	-	178	18977087	-	PF0715	-	NAD(P)H oxidase
736	 44.44	0	715679..716515	+	278	18977088	-	PF0716	-	3-hydroxyisobutyrate dehydrogenase
737	 47.05	+1	716903..717427	+	174	18977089	-	PF0717	-	putative methyltransferase
738	 51.88	+2	718003..718746	+	247	18977090	-	PF0718	-	hypothetical protein
739	 47.56	+1	718782..719006	+	74	18977091	-	PF0719	-	hypothetical protein
740	 55.25	+2	719033..719356	+	107	18977092	-	PF0720	-	hypothetical protein
741	 43.92	0	719708..720274	-	188	18977093	-	PF0721	-	hypothetical protein
742	 45.61	+1	720416..720985	+	189	18977094	-	PF0722	-	alkyl hydroperoxide reductase subunit c
743	 43.13	0	721320..722156	+	278	18977095	-	PF0723	-	hypothetical protein
744	 42.05	0	722255..722839	+	194	18977096	-	PF0724	-	hypothetical protein
745	 44.02	0	722875..723267	+	130	18977097	-	PF0725	-	hypothetical protein
746	 45.87	+1	723271..723645	+	124	18977098	-	PF0726	-	hypothetical protein
747	 51.14	+2	723739..723957	+	72	18977099	-	PF0727	-	hypothetical protein
748	 56.39	+2	724074..724715	+	213	18977100	-	PF0728	-	hypothetical protein
749	 56.30	+2	724719..725885	+	388	18977101	-	PF0729	-	mulitcopper oxidase domain-containing protein
750	 57.27	+2	725943..726857	+	304	18977102	-	PF0730	-	hypothetical protein
751	 55.95	+2	726955..727122	+	55	18977103	-	PF0731	-	copper-transporting atpase, p-type
752	 45.70	+1	727140..727325	-	61	33359501	-	PF0731.1n	-	hypothetical protein
753	 51.47	+2	727207..727956	-	249	18977104	-	PF0732	-	daunorubicin resistance ATP-binding protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.