IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
619	 44.27	0	627232..628103	-	290	33359490	-	PF0605	-	transposase
620	 42.70	0	627648..628106	-	152	33359491	-	PF0604.1n	-	transposase
621	 43.97	0	628148..629350	+	400	18976978	-	PF0606	-	hypothetical protein
622	 41.59	0	629376..630041	+	221	18976979	-	PF0607	-	hypothetical protein
623	 45.39	+1	630051..631178	+	375	18976980	-	PF0608	-	alcohol dehydrogenase
624	 42.06	0	631168..631545	+	125	18976981	-	PF0609	-	hypothetical protein
625	 44.22	0	631526..631819	-	97	18976982	-	PF0610	-	hypothetical protein
626	 43.43	0	631869..633017	+	382	18976983	-	PF0611	-	hypothetical protein
627	 41.79	0	633007..633810	-	267	33359492	-	PF0612	-	hypothetical protein
628	 46.45	+1	634042..635169	+	375	18976985	-	PF0613	-	hypothetical protein
629	 37.84	0	635224..635622	+	132	18976986	-	PF0614	-	inosine-5'-monophosphate dehydrogenase related protein III
630	 45.71	+1	635673..636092	+	139	18976987	hypA	PF0615	-	hydrogenase nickel incorporation protein
631	 42.01	0	636089..636814	+	241	18976988	-	PF0616	-	Mrp/NBP35 family nucleotide-binding protein
632	 39.20	0	636827..637303	+	158	18976989	-	PF0617	-	hydrogenase maturation protease
633	 41.12	0	637268..637858	-	196	18976990	mobA	PF0618	-	molybdopterin-guanine dinucleotide biosynthesis protein A
634	 42.47	0	637852..638256	-	134	18976991	-	PF0619	-	hypothetical protein
635	 44.65	+1	638313..638639	+	108	18976992	-	PF0620	-	hypothetical protein
636	 40.99	0	638636..639406	+	256	18976993	-	PF0621	-	hypothetical protein
637	 35.29	-1	639385..639486	+	33	18976994	-	PF0622	-	hypothetical protein
638	 40.92	0	639487..639987	-	166	18976995	-	PF0623	-	hypothetical protein
639	 39.61	0	640386..640847	-	153	18976996	-	PF0624	-	hypothetical protein
640	 38.08	0	641065..641844	+	259	18976997	-	PF0625	-	hypothetical protein
641	 37.54	0	641853..642209	+	118	18976998	-	PF0626	-	hypothetical protein
642	 35.46	-1	642284..642424	+	46	18976999	-	PF0627	-	hypothetical protein
643	 37.71	0	642417..642713	+	98	18977000	-	PF0628	-	hypothetical protein
644	 35.87	-1	642719..643387	+	222	18977001	-	PF0629	-	hypothetical protein
645	 42.19	0	643384..643575	-	63	33359493	-	PF0630	-	hypothetical protein
646	 43.00	0	643597..644610	-	337	18977003	-	PF0631	-	hypothetical protein
647	 39.24	0	644654..645415	-	253	18977004	-	PF0632	-	hypothetical protein
648	 37.58	0	645439..645909	-	156	33359494	-	PF0633	-	flavodoxin
649	 38.56	0	645887..647263	-	458	18977006	-	PF0634	-	DEXX-box atpase
650	 40.22	0	647323..648672	-	449	18977007	-	PF0635	-	DEXX-box atpase
651	 38.44	0	648765..650135	-	456	18977008	-	PF0636	-	DEXX-box atpase
652	 41.45	0	650200..651246	-	348	18977009	-	PF0637	-	hypothetical protein
653	 37.25	0	651243..652391	-	382	18977010	-	PF0638	-	hypothetical protein
654	 42.30	0	652404..653117	-	237	18977011	-	PF0639	-	hypothetical protein
655	 40.36	0	653114..655090	-	658	18977012	-	PF0640	-	ATP-dependent RNA helicase, putative
656	 41.41	0	655060..655851	-	263	18977013	-	PF0641	-	hypothetical protein
657	 45.03	+1	655852..656877	-	341	33359495	-	PF0642	-	hypothetical protein
658	 43.80	0	656874..657236	-	120	18977015	-	PF0643	-	hypothetical protein
659	 33.33	-2	657364..658026	+	220	18977016	-	PF0644	-	hypothetical protein
660	 38.00	0	658148..658447	+	99	18977017	-	PF0645	-	hypothetical protein
661	 39.60	0	658780..659130	-	116	18977018	-	PF0646	-	hypothetical protein
662	 43.47	0	659796..661442	-	548	18977019	-	PF0647	-	heme biosynthesis protein
663	 41.03	0	661581..661931	+	116	18977020	-	PF0648	-	hypothetical protein
664	 35.47	-1	661966..662433	+	155	18977021	-	PF0649	-	hypothetical protein
665	 34.85	-1	662539..663525	-	328	18977022	-	PF0650	-	hypothetical protein
666	 37.63	0	663510..664277	-	255	18977023	-	PF0651	-	hypothetical protein
667	 39.81	0	664685..665872	+	395	18977024	-	PF0652	-	DEXX-box atpase
668	 36.19	-1	666025..666549	+	174	18977025	-	PF0653	-	hypothetical protein
669	 38.62	0	666751..667128	+	125	18977026	-	PF0654	-	hypothetical protein
670	 38.27	0	667119..668231	+	370	18977027	-	PF0655	-	serine/threonine-protein kinase
671	 35.83	-1	668273..668512	+	79	33359496	-	PF0655.1n	-	hypothetical protein
672	 38.35	0	668559..668957	-	132	18977028	-	PF0656	-	hypothetical protein
673	 39.13	0	668997..669893	-	298	18977029	-	PF0657	-	putative dihydrodipicolinate synthase
674	 38.98	0	669906..670082	-	58	18977030	-	PF0658	-	hypothetical protein
675	 40.16	0	670460..670957	-	165	18977031	-	PF0659	-	hypothetical protein
676	 52.56	+2	671023..671979	-	318	18977032	-	PF0660	-	iron-sulfur cluster binding protein
677	 54.97	+2	672050..672844	+	264	18977033	-	PF0661	-	hypothetical protein
678	 47.40	+1	672937..673128	+	63	18977034	-	PF0662	-	hypothetical protein
679	 51.61	+2	673193..674155	+	320	18977035	-	PF0663	-	hypothetical protein
680	 50.16	+2	674186..674494	+	102	18977036	-	PF0664	-	hypothetical protein
681	 40.74	0	674514..674864	-	116	18977037	-	PF0665	-	hypothetical protein
682	 41.43	0	674979..676337	-	452	18977038	-	PF0666	-	nol1-nop2-sun family putative nucleolar protein IV
683	 42.79	0	676584..677936	-	450	18977039	-	PF0667	-	adenylosuccinate lyase
684	 39.37	0	678104..678484	-	126	18977040	-	PF0668	-	hypothetical protein
685	 37.73	0	678575..679507	+	310	18977041	-	PF0669	-	hypothetical protein
686	 44.61	0	679716..681488	-	590	18977042	-	PF0670	-	putative ATPase RIL
687	 38.73	0	681560..681763	+	67	33359497	-	PF0670.1n	-	hypothetical protein
688	 46.72	+1	681821..683389	+	522	18977043	-	PF0671	-	methylmalonyl-coadecarboxylase, subunit alpha
689	 38.24	0	683370..683756	+	128	18977044	-	PF0672	-	hypothetical protein
690	 45.75	+1	683759..684193	+	144	18977045	-	PF0673	-	putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
691	 47.05	+1	684200..685402	+	400	18977046	-	PF0674	-	ion gradient-generating decarboxylase subunit beta
692	 39.68	0	685459..685710	+	83	18977047	-	PF0675	-	hypothetical protein
693	 46.03	+1	685707..686651	-	314	18977048	-	PF0676	-	carbamate kinase-like carbamoyl phosphate synthetase
694	 43.32	0	686783..688945	-	720	18977049	-	PF0677	-	ski2-like helicase
695	 44.30	0	688955..690103	-	382	18977050	-	PF0678	-	hypothetical protein
696	 40.03	0	690118..690789	+	223	18977051	-	PF0679	-	hypothetical protein
697	 46.38	+1	690764..691177	-	137	18977052	-	PF0680	-	hypothetical protein
698	 35.69	-1	691384..692061	+	225	18977053	-	PF0681	-	hypothetical protein
699	 39.89	0	692075..692257	-	60	18977054	-	PF0682	-	hypothetical protein
700	 41.52	0	692106..692276	+	56	18977055	-	PF0683	-	hypothetical protein
701	 37.89	0	692283..692699	+	138	18977056	-	PF0684	-	hypothetical protein
702	 40.93	0	693117..694037	-	306	18977057	-	PF0685	-	hypothetical protein
703	 37.62	0	694049..694468	-	139	18977058	-	PF0686	-	hypothetical protein
704	 40.61	0	694475..695326	-	283	18977059	-	PF0687	-	transcription initiation factor IIB chain b
705	 42.08	0	695694..695876	+	60	33359498	-	PF0687.1n	-	hypothetical protein
706	 32.83	-2	698653..698850	+	65	33359499	-	PF0687.2n	-	hypothetical protein
707	 45.91	+1	699079..699579	+	166	18977060	-	PF0688	-	subtilisin-like protease
708	 48.39	+2	699650..700021	+	123	18977061	-	PF0689	-	hypothetical protein
709	 51.76	+2	699847..700101	-	84	18977062	-	PF0690	-	hypothetical protein
710	 52.97	+2	700151..700537	-	128	18977063	-	PF0691	-	hypothetical protein
711	 52.80	+2	700741..702081	+	446	161484713	-	PF0692	-	hydroxylamine reductase
712	 46.12	+1	702106..702582	-	158	18977065	-	PF0693	-	hypothetical protein
713	 52.38	+2	702693..703868	+	391	18977066	-	PF0694	-	flavoprotein
714	 49.16	+2	703783..705210	+	475	18977067	-	PF0695	-	hypothetical protein
715	 44.55	0	705212..705523	+	103	18977068	-	PF0696	-	putative carbohydrate-binding protein
716	 46.42	+1	705602..705922	+	106	18977069	-	PF0697	-	multidrug resistance protein
717	 45.06	+1	705937..706533	+	198	18977070	-	PF0698	-	hypothetical protein
718	 42.14	0	706356..706775	-	139	18977071	-	PF0699	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.