IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
526	 41.91	0	533881..535524	-	547	18976886	-	PF0514	-	d-alanine glycine permease
527	 39.05	0	535571..536374	+	267	18976887	-	PF0515	-	hypothetical protein
528	 37.62	0	536364..536783	+	139	18976888	-	PF0516	-	hypothetical protein
529	 41.06	0	536770..537714	+	314	18976889	-	PF0517	-	methanol dehydrogenase regulatory protein
530	 40.28	0	537725..538948	+	407	18976890	-	PF0518	-	hypothetical protein
531	 37.44	0	538942..539355	+	137	18976891	-	PF0519	-	hypothetical protein
532	 42.99	0	539348..540538	-	396	18976892	-	PF0520	-	hypothetical protein
533	 37.16	0	540549..540809	-	86	18976893	-	PF0521	-	hypothetical protein
534	 41.52	0	540820..541992	-	390	18976894	-	PF0522	-	aspartate aminotransferase
535	 37.30	0	542154..542582	-	142	18976895	-	PF0523	-	hypothetical protein
536	 38.36	0	542756..542974	+	72	33359483	-	PF0524	-	hypothetical protein
537	 40.02	0	542993..544219	+	408	18976897	-	PF0525	-	cell division protein FtsZ
538	 37.71	0	544265..545041	+	258	18976898	-	PF0526	-	soj - like protein
539	 38.89	0	545022..545363	+	113	18976899	-	PF0527	-	hypothetical protein
540	 36.91	-1	545343..546152	-	269	18976900	-	PF0528	-	cobalt transport ATP-binding protein
541	 36.70	-1	546149..546802	-	217	18976901	-	PF0529	-	hypothetical protein
542	 41.67	0	546805..547056	-	83	18976902	-	PF0530	-	hypothetical protein
543	 44.07	0	547053..547667	-	204	18976903	-	PF0531	-	cobalamin biosynthesis protein m
544	 41.85	0	547843..549216	+	457	18976904	-	PF0532	-	hypothetical protein
545	 43.43	0	549209..551149	+	646	18976905	-	PF0533	-	indolepyruvate ferredoxin oxidoreductase subunit a
546	 43.88	0	551146..551790	+	214	18976906	-	PF0534	-	indolepyruvate oxidoreductase subunit B
547	 36.13	-1	551853..552281	-	142	18976907	-	PF0535	-	putative transcriptional regulator
548	 44.44	0	552553..553254	-	233	18976908	-	PF0536	-	transposase
549	 32.86	-2	553680..555992	-	770	18976909	-	PF0537	-	hypothetical protein
550	 41.48	0	556872..558308	-	478	18976910	-	PF0538	-	hypothetical protein
551	 43.36	0	558412..558870	+	152	33359484	-	PF0538.1n	-	transposase
552	 44.50	0	558415..559286	+	290	33359485	-	PF0539	-	transposase
553	 42.45	0	559431..560165	+	244	18976912	thyX	PF0540	-	FAD-dependent thymidylate synthase
554	 40.54	0	560366..561253	+	295	18976913	-	PF0541	-	methionine aminopeptidase
555	 41.79	0	561410..562615	+	401	18976914	-	PF0542	-	molybdenum cofactor biosynthesis protein
556	 41.76	0	562627..562899	+	90	18976915	-	PF0543	-	molybdopterin converting factor, subunit 1
557	 37.81	0	562896..563297	-	133	18976916	-	PF0544	-	hypothetical protein
558	 35.37	-1	563290..563583	-	97	18976917	-	PF0545	-	hypothetical protein
559	 36.04	-1	563543..564835	-	430	18976918	-	PF0546	-	hypothetical protein
560	 46.03	+1	565055..566401	-	448	18976919	-	PF0547	-	hypothetical protein
561	 41.23	0	566642..566869	+	75	18976920	-	PF0548	-	hydrogenase expression/formation protein
562	 42.30	0	566870..567973	+	367	18976921	-	PF0549	-	hydrogenase expression/formation protein
563	 45.93	+1	568475..568720	+	81	18976922	-	PF0550	-	NADH oxidase
564	 34.44	-1	568724..568903	+	59	18976923	-	PF0551	-	hypothetical protein
565	 41.25	0	568808..570007	-	399	18976924	-	PF0552	-	arsenical-resistance protein acr3
566	 39.11	0	570148..570597	+	149	18976925	-	PF0553	-	arsenate reductase
567	 42.02	0	570884..571873	+	329	18976926	-	PF0554	-	hypothetical protein
568	 39.02	0	571932..572705	-	257	18976927	-	PF0555	-	hypothetical protein
569	 36.95	-1	572901..573674	-	257	18976928	-	PF0556	-	hypothetical protein
570	 47.25	+1	573664..574446	-	260	18976929	fabG	PF0557	-	3-ketoacyl-(acyl-carrier-protein) reductase
571	 41.33	0	574633..575520	+	295	18976930	-	PF0558	-	cation efflux system protein
572	 44.83	+1	575593..577932	+	779	18976931	-	PF0559	-	hydrogenase expression/formation regulatory protein
573	 35.22	-1	577963..578865	-	300	18976932	-	PF0560	-	hypothetical protein
574	 36.31	-1	578968..579471	+	167	18976933	-	PF0561	-	hypothetical protein
575	 44.27	0	579480..580229	+	249	18976934	-	PF0562	-	transposase
576	 35.92	-1	580237..581202	+	321	18976935	-	PF0563	-	hypothetical protein
577	 41.55	0	581261..584083	-	940	18976936	-	PF0564	-	ATP-dependent RNA helicase hepa, putative
578	 44.99	+1	584080..584508	-	142	18976937	-	PF0565	-	hypothetical protein
579	 43.88	0	584508..587825	-	1105	18976938	-	PF0566	-	hypothetical protein
580	 46.43	+1	587822..590494	-	890	18976939	-	PF0567	-	hypothetical protein
581	 44.14	0	590397..590831	-	144	18976940	-	PF0568	-	hypothetical protein
582	 46.71	+1	590873..591298	+	141	18976941	-	PF0569	-	hypothetical protein
583	 47.48	+1	591279..591695	-	138	18976942	-	PF0570	-	hypothetical protein
584	 39.58	0	591722..592441	-	239	33359486	-	PF0571	-	hypothetical protein
585	 45.93	+1	592552..594519	+	655	18976944	-	PF0572	-	dna2-nam7 helicase family protein
586	 35.96	-1	594596..594823	+	75	18976945	-	PF0573	-	hypothetical protein
587	 36.07	-1	594811..595212	+	133	18976946	-	PF0574	-	hypothetical protein
588	 35.69	-1	595671..596009	-	112	18976947	-	PF0575	-	hypothetical protein
589	 36.88	-1	596048..596188	-	46	18976948	-	PF0576	-	hypothetical protein
590	 43.08	0	596299..597150	+	283	18976949	-	PF0577	-	ATP-binding transport protein
591	 44.44	0	597147..597848	+	233	18976950	-	PF0578	-	hypothetical protein
592	 43.00	0	597845..598537	+	230	18976951	-	PF0579	-	hypothetical protein
593	 35.43	-1	598798..599799	+	333	18976952	-	PF0580	-	hypothetical protein
594	 40.97	0	600032..601354	-	440	18976953	-	PF0581	-	hypothetical protein
595	 43.40	0	601462..602226	-	254	18976954	-	PF0582	-	daunorubicin resistance membrane protein
596	 43.27	0	602223..603188	-	321	18976955	-	PF0583	-	daunorubicin resistance ATP-binding protein
597	 40.53	0	603157..603642	-	161	18976956	-	PF0584	-	hypothetical protein
598	 39.53	0	603707..605014	-	435	18976957	-	PF0585	-	DEXX-box atpase
599	 39.83	0	605418..606017	+	199	18976958	-	PF0586	-	hypothetical protein
600	 43.41	0	606010..606624	+	204	18976959	-	PF0587	-	hypothetical protein
601	 45.10	+1	606551..606754	+	67	33359487	-	PF0586.1n	-	hypothetical protein
602	 46.20	+1	606805..608172	-	455	18976960	-	PF0588	-	phospho-sugar mutase
603	 43.51	0	608213..609598	-	461	18976961	-	PF0589	-	mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase
604	 39.74	0	609612..610391	-	259	33359488	-	PF0590	-	mannosyl-3-phosphoglycerate phosphatase
605	 43.38	0	610337..611521	-	394	18976963	-	PF0591	-	hypothetical protein
606	 41.94	0	611563..614166	-	867	18976964	-	PF0592	-	ATP-dependent RNA helicase, putative
607	 42.77	0	614163..615095	-	310	18976965	-	PF0593	-	hypothetical protein
608	 45.78	+1	615154..616101	-	315	18976966	-	PF0594	-	ornithine carbamoyltransferase
609	 43.83	0	616202..617011	-	269	18976967	-	PF0595	-	diphthine synthase
610	 42.96	0	617011..617955	-	314	18976968	-	PF0596	-	mRNA 3'-end processing factor
611	 45.88	+1	617713..619035	+	440	18976969	-	PF0597	-	IAA-amino acid hydrolase
612	 42.48	0	619025..619483	-	152	18976970	-	PF0598	-	aspartate carbamoyltransferase regulatory subunit
613	 45.63	+1	619484..620410	-	308	18976971	pyrB	PF0599	-	aspartate carbamoyltransferase catalytic subunit
614	 42.30	0	620490..621560	+	356	33359489	-	PF0600	-	hypothetical protein
615	 43.92	0	621557..622444	+	295	18976973	-	PF0601	-	phosphomethylpyrimidine kinase
616	 42.77	0	622480..622998	+	172	18976974	-	PF0602	-	hypothetical protein
617	 41.61	0	625714..626160	+	148	18976975	-	PF0603	-	hypothetical protein
618	 45.99	+1	626147..627118	-	323	18976976	-	PF0604	-	hydrogenase expression/formation protein
619	 44.27	0	627232..628103	-	290	33359490	-	PF0605	-	transposase
620	 42.70	0	627648..628106	-	152	33359491	-	PF0604.1n	-	transposase
621	 43.97	0	628148..629350	+	400	18976978	-	PF0606	-	hypothetical protein
622	 41.59	0	629376..630041	+	221	18976979	-	PF0607	-	hypothetical protein
623	 45.39	+1	630051..631178	+	375	18976980	-	PF0608	-	alcohol dehydrogenase
624	 42.06	0	631168..631545	+	125	18976981	-	PF0609	-	hypothetical protein
625	 44.22	0	631526..631819	-	97	18976982	-	PF0610	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.