IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
475	 40.28	0	477397..478101	-	234	18976835	-	PF0463	-	hydrolase related to 2-haloalkanoic acid dehalogenase
476	 42.25	0	478142..480103	-	653	18976836	-	PF0464	-	glyceraldehyde-3-phosphate:ferredoxin oxidoreductase
477	 37.04	-1	480153..481205	-	350	18976837	-	PF0465	-	putative glycosyl transferase
478	 39.18	0	481195..481485	-	96	18976838	-	PF0466	-	hypothetical protein
479	 42.31	0	481472..484558	-	1028	18976839	-	PF0467	-	ATP-dependent protease LA
480	 36.76	-1	484575..484982	+	135	18976840	-	PF0468	-	hypothetical protein
481	 37.52	0	484979..485551	-	190	18976841	-	PF0469	-	hypothetical protein
482	 37.43	0	485548..485889	-	113	18976842	-	PF0470	-	hypothetical protein
483	 38.27	0	485963..487156	-	397	18976843	-	PF0471	-	hypothetical protein
484	 39.13	0	487196..487333	-	45	18976844	-	PF0472	-	hypothetical protein
485	 41.12	0	487387..488067	+	226	18976845	-	PF0473	-	o-sialoglycoprotein endopeptidase
486	 37.00	-1	488057..489745	-	562	18976846	-	PF0474	-	DNA mismatch repair protein
487	 38.99	0	489742..490572	-	276	18976847	-	PF0475	-	translation initiation factor IF-2B subunit alpha
488	 40.71	0	490572..491330	-	252	18976848	-	PF0476	-	competence damage-inducible protein A
489	 42.90	0	491442..492863	+	473	18976849	-	PF0477	-	cytoplasmic alpha-amylase
490	 40.62	0	492789..494861	-	690	18976850	-	PF0478	-	alpha-amylase
491	 36.91	-1	495032..496429	-	465	18976851	-	PF0479	-	hypothetical protein
492	 40.83	0	496589..497362	+	257	18976852	-	PF0480	-	lysophospholipase
493	 40.19	0	497513..497935	-	140	18976853	-	PF0481	-	translation initiation factor IF-2 subunit beta
494	 40.79	0	497978..501127	-	1049	18976854	-	PF0482	-	cell division control protein 21
495	 36.61	-1	501129..501617	-	162	18976855	-	PF0483	-	hypothetical protein
496	 36.68	-1	501670..502416	-	248	18976856	-	PF0484	-	GTPase
497	 41.60	0	502464..503201	-	245	18976857	-	PF0485	-	cell division inhibitor minD - like protein
498	 38.01	0	503315..504169	+	284	18976858	-	PF0486	-	hypothetical protein
499	 37.23	0	504156..505157	-	333	18976859	-	PF0487	-	related to autolysins
500	 41.27	0	505347..505724	+	125	18976860	-	PF0488	-	30S ribosomal protein S6e
501	 33.08	-2	505821..506618	+	265	18976861	-	PF0489	-	hypothetical protein
502	 36.07	-1	506615..507346	-	243	18976862	-	PF0490	-	hypothetical protein
503	 38.10	0	507364..507951	-	195	18976863	-	PF0491	-	transcription initiation factor E subunit alpha
504	 35.46	-1	508068..508349	-	93	18976864	-	PF0492	-	hypothetical protein
505	 38.43	0	508590..510569	+	659	18976865	-	PF0493	-	hypothetical protein
506	 38.86	0	510566..513748	+	1060	18976866	-	PF0494	-	DNA topoisomerase I
507	 39.48	0	513832..517476	+	1214	18976867	-	PF0495	-	reverse gyrase
508	 41.64	0	517689..518483	+	264	18976868	-	PF0496	-	hypothetical protein
509	 38.50	0	518588..518800	-	70	18976869	-	PF0497	-	hypothetical protein
510	 40.25	0	518797..519114	-	105	18976870	-	PF0498	-	hypothetical protein
511	 39.78	0	519111..519824	-	237	18976871	-	PF0499	-	arginase 1 -like protein
512	 40.74	0	519829..520665	-	278	18976872	-	PF0500	-	met-10+ protein
513	 40.90	0	520634..521188	-	184	18976873	-	PF0501	-	putative NTPase
514	 40.59	0	521219..521935	-	238	18976874	-	PF0502	-	iron(III) dicitrate transport system permease protein fece
515	 43.37	0	521928..522923	-	331	18976875	-	PF0503	-	putative iron ABC transporter
516	 44.31	0	522953..525403	-	816	18976876	-	PF0504	-	DNA helicase
517	 38.43	0	525443..525991	-	182	18976877	-	PF0505	-	hypothetical protein
518	 35.90	-1	526010..526126	+	38	18976878	-	PF0506	-	hypothetical protein
519	 38.52	0	526431..526565	+	44	18976879	-	PF0507	-	hypothetical protein
520	 34.86	-1	526555..528582	-	675	18976880	-	PF0508	-	integral membrane glycosyltransferase
521	 36.14	-1	528588..530690	-	700	18976881	-	PF0509	-	integral membrane glycosyltransferase
522	 43.99	0	530687..530977	-	96	18976882	-	PF0510	-	mazg beta-lactamase regulatory protein - like protein
523	 37.97	0	530974..531792	-	272	18976883	-	PF0511	-	3-methyladenine DNA glycosylase
524	 44.00	0	531918..532442	+	174	18976884	-	PF0512	-	transcription factor
525	 43.33	0	532443..533822	-	459	18976885	-	PF0513	-	4-aminobutyrate aminotransferase
526	 41.91	0	533881..535524	-	547	18976886	-	PF0514	-	d-alanine glycine permease
527	 39.05	0	535571..536374	+	267	18976887	-	PF0515	-	hypothetical protein
528	 37.62	0	536364..536783	+	139	18976888	-	PF0516	-	hypothetical protein
529	 41.06	0	536770..537714	+	314	18976889	-	PF0517	-	methanol dehydrogenase regulatory protein
530	 40.28	0	537725..538948	+	407	18976890	-	PF0518	-	hypothetical protein
531	 37.44	0	538942..539355	+	137	18976891	-	PF0519	-	hypothetical protein
532	 42.99	0	539348..540538	-	396	18976892	-	PF0520	-	hypothetical protein
533	 37.16	0	540549..540809	-	86	18976893	-	PF0521	-	hypothetical protein
534	 41.52	0	540820..541992	-	390	18976894	-	PF0522	-	aspartate aminotransferase
535	 37.30	0	542154..542582	-	142	18976895	-	PF0523	-	hypothetical protein
536	 38.36	0	542756..542974	+	72	33359483	-	PF0524	-	hypothetical protein
537	 40.02	0	542993..544219	+	408	18976897	-	PF0525	-	cell division protein FtsZ
538	 37.71	0	544265..545041	+	258	18976898	-	PF0526	-	soj - like protein
539	 38.89	0	545022..545363	+	113	18976899	-	PF0527	-	hypothetical protein
540	 36.91	-1	545343..546152	-	269	18976900	-	PF0528	-	cobalt transport ATP-binding protein
541	 36.70	-1	546149..546802	-	217	18976901	-	PF0529	-	hypothetical protein
542	 41.67	0	546805..547056	-	83	18976902	-	PF0530	-	hypothetical protein
543	 44.07	0	547053..547667	-	204	18976903	-	PF0531	-	cobalamin biosynthesis protein m
544	 41.85	0	547843..549216	+	457	18976904	-	PF0532	-	hypothetical protein
545	 43.43	0	549209..551149	+	646	18976905	-	PF0533	-	indolepyruvate ferredoxin oxidoreductase subunit a
546	 43.88	0	551146..551790	+	214	18976906	-	PF0534	-	indolepyruvate oxidoreductase subunit B
547	 36.13	-1	551853..552281	-	142	18976907	-	PF0535	-	putative transcriptional regulator
548	 44.44	0	552553..553254	-	233	18976908	-	PF0536	-	transposase
549	 32.86	-2	553680..555992	-	770	18976909	-	PF0537	-	hypothetical protein
550	 41.48	0	556872..558308	-	478	18976910	-	PF0538	-	hypothetical protein
551	 43.36	0	558412..558870	+	152	33359484	-	PF0538.1n	-	transposase
552	 44.50	0	558415..559286	+	290	33359485	-	PF0539	-	transposase
553	 42.45	0	559431..560165	+	244	18976912	thyX	PF0540	-	FAD-dependent thymidylate synthase
554	 40.54	0	560366..561253	+	295	18976913	-	PF0541	-	methionine aminopeptidase
555	 41.79	0	561410..562615	+	401	18976914	-	PF0542	-	molybdenum cofactor biosynthesis protein
556	 41.76	0	562627..562899	+	90	18976915	-	PF0543	-	molybdopterin converting factor, subunit 1
557	 37.81	0	562896..563297	-	133	18976916	-	PF0544	-	hypothetical protein
558	 35.37	-1	563290..563583	-	97	18976917	-	PF0545	-	hypothetical protein
559	 36.04	-1	563543..564835	-	430	18976918	-	PF0546	-	hypothetical protein
560	 46.03	+1	565055..566401	-	448	18976919	-	PF0547	-	hypothetical protein
561	 41.23	0	566642..566869	+	75	18976920	-	PF0548	-	hydrogenase expression/formation protein
562	 42.30	0	566870..567973	+	367	18976921	-	PF0549	-	hydrogenase expression/formation protein
563	 45.93	+1	568475..568720	+	81	18976922	-	PF0550	-	NADH oxidase
564	 34.44	-1	568724..568903	+	59	18976923	-	PF0551	-	hypothetical protein
565	 41.25	0	568808..570007	-	399	18976924	-	PF0552	-	arsenical-resistance protein acr3
566	 39.11	0	570148..570597	+	149	18976925	-	PF0553	-	arsenate reductase
567	 42.02	0	570884..571873	+	329	18976926	-	PF0554	-	hypothetical protein
568	 39.02	0	571932..572705	-	257	18976927	-	PF0555	-	hypothetical protein
569	 36.95	-1	572901..573674	-	257	18976928	-	PF0556	-	hypothetical protein
570	 47.25	+1	573664..574446	-	260	18976929	fabG	PF0557	-	3-ketoacyl-(acyl-carrier-protein) reductase
571	 41.33	0	574633..575520	+	295	18976930	-	PF0558	-	cation efflux system protein
572	 44.83	+1	575593..577932	+	779	18976931	-	PF0559	-	hydrogenase expression/formation regulatory protein
573	 35.22	-1	577963..578865	-	300	18976932	-	PF0560	-	hypothetical protein
574	 36.31	-1	578968..579471	+	167	18976933	-	PF0561	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.