IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
380	 42.02	0	387603..388580	+	325	18976745	-	PF0373	-	putative ABC transporter, periplasmic binding protein
381	 42.80	0	388629..389822	+	397	18976746	-	PF0374	-	translation-associated GTPase
382	 41.27	0	389836..390276	-	146	18976747	-	PF0375	-	prefoldin subunit alpha
383	 43.16	0	390301..390534	-	77	18976748	rplX	PF0376	-	50S ribosomal protein LX
384	 43.13	0	390548..391231	-	227	18976749	-	PF0377	-	translation initiation factor IF-6
385	 45.12	+1	391258..391554	-	98	33359475	-	PF0378	-	50S ribosomal protein L31e
386	 48.08	+1	391556..391711	-	51	18976751	rpl39e	PF0379	-	50S ribosomal protein L39e
387	 43.09	0	391829..392566	+	245	33359476	-	PF0380	-	hypothetical protein
388	 42.13	0	392615..393535	+	306	18976753	-	PF0381	-	hypothetical protein
389	 43.30	0	393402..393923	+	173	18976754	-	PF0382	-	prefoldin
390	 39.29	0	393960..394295	+	111	18976755	-	PF0383	-	hypothetical protein
391	 41.19	0	394252..395244	+	330	18976756	-	PF0384	-	hypothetical protein
392	 40.98	0	395249..395575	+	108	18976757	-	PF0385	-	hypothetical protein
393	 43.25	0	395581..396306	+	241	18976758	-	PF0386	-	hypothetical protein
394	 41.89	0	396310..396648	+	112	18976759	-	PF0387	-	putative carbohydrate-binding protein
395	 38.94	0	396645..397553	-	302	18976760	-	PF0388	-	hypothetical protein
396	 44.59	0	397700..398401	+	233	18976761	-	PF0389	-	transposase
397	 41.88	0	398596..399753	+	385	18976762	-	PF0390	-	hypothetical protein
398	 45.19	+1	399753..400157	+	134	18976763	-	PF0391	-	hypothetical protein
399	 43.14	0	400111..401364	+	417	18976764	-	PF0392	-	metalloprotease
400	 35.54	-1	401435..402160	+	241	18976765	-	PF0393	-	hypothetical protein
401	 37.90	0	402144..403040	-	298	18976766	-	PF0394	-	UDP-n-acetylglucosamine-dolichyl-phosphate n-acetylglucosaminephosphotransferase
402	 39.36	0	403030..403560	-	176	18976767	-	PF0395	-	oxetanocin-like protein
403	 39.97	0	403571..404143	-	190	18976768	-	PF0396	-	hypothetical protein
404	 39.04	0	403941..404501	+	186	18976769	-	PF0397	-	GTP-binding protein
405	 41.87	0	404502..405005	-	167	18976770	-	PF0398	-	hypothetical protein
406	 43.50	0	405007..407229	-	740	18976771	-	PF0399	-	s1p family ribosomal protein
407	 39.80	0	407242..408231	-	329	18976772	-	PF0400	-	hypothetical protein
408	 36.79	-1	408267..408845	-	192	18976773	-	PF0401	-	methyltransferase
409	 41.22	0	408966..409916	-	316	18976774	-	PF0402	-	UDP- or dTTP-glucose 4-epimerase or 4-6-dehydratase
410	 35.47	-1	409922..410437	-	171	18976775	-	PF0403	-	hypothetical protein
411	 37.31	0	410434..411690	-	418	18976776	-	PF0404	-	hypothetical protein
412	 39.44	0	411687..412619	-	310	18976777	-	PF0405	-	methanol dehydrogenase regulatory protein
413	 35.49	-1	412570..413634	-	354	18976778	-	PF0406	-	hypothetical protein
414	 39.04	0	413429..413656	+	75	33359477	-	PF0406.1n	-	hypothetical protein
415	 34.48	-1	413631..415454	-	607	18976779	-	PF0407	-	hypothetical protein
416	 44.73	+1	415421..416122	-	233	18976780	-	PF0408	-	transposase
417	 38.65	0	416244..417014	+	256	18976781	-	PF0409	-	hypothetical protein
418	 35.98	-1	417004..417267	+	87	18976782	-	PF0410	-	hypothetical protein
419	 39.34	0	417264..419495	+	743	18976783	-	PF0411	-	protein-export membrane protein
420	 39.00	0	419492..420496	-	334	18976784	-	PF0412	-	hypothetical protein
421	 37.48	0	420500..421126	-	208	18976785	-	PF0413	-	hypothetical protein
422	 38.48	0	421177..421662	+	161	18976786	-	PF0414	-	hypothetical protein
423	 39.23	0	421621..422808	-	395	18976787	-	PF0415	-	dehydrogenase
424	 33.82	-1	422811..423626	-	271	18976788	-	PF0416	-	hypothetical protein
425	 38.83	0	423623..424822	-	399	18976789	-	PF0417	-	hypothetical protein
426	 42.66	0	424832..425785	-	317	18976790	-	PF0418	-	methanol dehydrogenase regulatory protein
427	 40.63	0	425775..426761	-	328	18976791	-	PF0419	-	hypothetical protein
428	 39.56	0	426743..429601	-	952	18976792	-	PF0420	-	hypothetical protein
429	 42.52	0	429657..430799	-	380	18976793	purP	PF0421	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
430	 42.42	0	430811..432130	-	439	18976794	-	PF0422	-	phosphoribosylamine--glycine ligase
431	 31.37	-2	432279..432431	+	50	18976795	-	PF0423	-	hypothetical protein
432	 36.42	-1	432443..432961	+	172	18976796	-	PF0424	-	hypothetical protein
433	 39.08	0	432964..433728	+	254	18976797	-	PF0425	-	hypothetical protein
434	 40.48	0	433790..434908	+	372	18976798	-	PF0426	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
435	 41.13	0	434901..435413	+	170	18976799	-	PF0427	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
436	 36.22	-1	435498..435947	+	149	18976800	-	PF0428	-	partial alanyl-tRNA synthetase matches COOH terminus
437	 41.36	0	435969..437450	-	493	18976801	-	PF0429	-	putative proline permease
438	 42.42	0	437779..437877	-	32	33359478	-	PF0429.1n	-	transposase
439	 45.97	+1	438413..439702	-	429	18976802	purT	PF0430	-	phosphoribosylglycinamide formyltransferase 2
440	 41.49	0	439838..440842	+	334	18976803	-	PF0431	-	phosphoribosylaminoimidazole synthetase
441	 40.02	0	440866..441687	+	273	18976804	-	PF0432	-	putative sugar-catabolism phosphotransferase
442	 39.74	0	442034..442189	+	51	18976805	-	PF0433	-	methyl-accepting chemotaxis related protein
443	 35.99	-1	442192..442530	-	112	18976806	-	PF0434	-	hypothetical protein
444	 42.24	0	442921..443268	-	115	33359479	-	PF0432.3n	-	hypothetical protein
445	 48.46	+2	443269..444636	+	455	18976807	-	PF0435	-	DEXX-box atpase
446	 47.69	+1	445419..446393	-	324	18976808	-	PF0436	-	hypothetical protein
447	 37.11	-1	446395..447693	-	432	18976809	-	PF0437	-	hypothetical protein
448	 37.70	0	447736..447987	-	83	33359480	-	PF0437.1n	-	hypothetical protein
449	 42.81	0	448319..448645	+	108	18976810	-	PF0438	-	hypothetical protein
450	 41.72	0	449422..450351	-	309	18976811	-	PF0439	-	hypothetical protein
451	 39.47	0	451299..451526	+	75	33359481	-	PF0439.3n	-	hypothetical protein
452	 44.09	0	451759..456981	-	1740	18976812	-	PF0440	-	ribonucleotide-diphosphate reductase subunit alpha
453	 39.53	0	457188..458171	-	327	18976813	-	PF0441	-	galactose-1-phosphate uridylyltransferase
454	 41.00	0	458228..459493	+	421	18976814	-	PF0442	-	beta-glucosidase
455	 40.54	0	459482..460813	-	443	18976815	-	PF0443	-	putative membrane transport protein
456	 39.63	0	460800..461894	-	364	18976816	-	PF0444	-	hydrolase
457	 38.90	0	461891..462949	-	352	18976817	-	PF0445	-	galactokinase
458	 35.51	-1	462991..463449	-	152	18976818	-	PF0446	-	NDP-sugar synthase
459	 44.59	0	463562..464263	-	233	18976819	-	PF0447	-	transposase
460	 33.78	-1	464321..464989	-	222	18976820	-	PF0448	-	putative mannose-1-phosphate guanyltransferase
461	 36.97	-1	464844..465722	+	292	33359482	-	PF0449	-	hypothetical protein
462	 42.27	0	465719..467038	-	439	18976822	-	PF0450	-	glutamine synthetase i
463	 34.41	-1	467197..467475	-	92	18976823	-	PF0451	-	hypothetical protein
464	 39.42	0	467478..467888	-	136	18976824	-	PF0452	-	hypothetical protein
465	 36.99	-1	467898..469481	-	527	18976825	-	PF0453	-	hypothetical protein
466	 38.99	0	469587..470699	+	370	18976826	-	PF0454	-	bacteriochlorophyll synthase, 43 kDa subunit
467	 37.24	0	470710..471042	+	110	18976827	-	PF0455	-	hypothetical protein
468	 42.13	0	471039..472538	-	499	18976828	-	PF0456	-	carboxypeptidase 1
469	 39.51	0	472643..473209	-	188	18976829	-	PF0457	-	metalloprotease
470	 39.68	0	473220..473786	-	188	18976830	-	PF0458	-	nicotinamide-nucleotide adenylyltransferase
471	 40.31	0	473792..474565	-	257	18976831	-	PF0459	-	hypothetical protein
472	 35.08	-1	474638..476242	+	534	18976832	-	PF0460	-	hypothetical protein
473	 39.52	0	476258..476839	+	193	18976833	-	PF0461	-	tRNA 2'-O-methylase
474	 38.65	0	476787..477350	+	187	18976834	-	PF0462	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
475	 40.28	0	477397..478101	-	234	18976835	-	PF0463	-	hydrolase related to 2-haloalkanoic acid dehalogenase
476	 42.25	0	478142..480103	-	653	18976836	-	PF0464	-	glyceraldehyde-3-phosphate:ferredoxin oxidoreductase
477	 37.04	-1	480153..481205	-	350	18976837	-	PF0465	-	putative glycosyl transferase
478	 39.18	0	481195..481485	-	96	18976838	-	PF0466	-	hypothetical protein
479	 42.31	0	481472..484558	-	1028	18976839	-	PF0467	-	ATP-dependent protease LA
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.