IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
348	 39.73	0	354894..355643	-	249	33359470	-	PF0342	-	hypothetical protein
349	 44.71	+1	355681..356946	-	421	18976715	-	PF0343	-	S-adenosyl-L-homocysteine hydrolase
350	 44.62	0	356987..358120	-	377	18976716	-	PF0344	-	tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein
351	 43.78	0	358122..358370	-	82	18976717	-	PF0345	-	molybdopterin converting factor, subunit 1
352	 46.26	+1	358419..360236	-	605	18976718	-	PF0346	-	aldehyde:ferredoxin oxidoreductase
353	 41.31	0	360431..361408	+	325	18976719	-	PF0347	-	hypothetical protein
354	 44.59	0	361528..362229	-	233	18976720	-	PF0348	-	transposase
355	 38.67	0	362400..363074	-	224	18976721	-	PF0349	-	hypothetical protein
356	 40.85	0	363090..363914	-	274	18976722	-	PF0350	-	putative cation antiporter
357	 36.71	-1	364274..365131	-	285	18976723	-	PF0351	-	hypothetical protein
358	 38.41	0	365038..365628	-	196	33359471	-	PF0352	-	hypothetical protein
359	 40.64	0	365787..366935	-	382	33359472	-	PF0353	-	hypothetical protein
360	 40.17	0	367052..367855	+	267	18976726	-	PF0354	-	hypothetical protein
361	 37.50	0	367848..368303	-	151	33359473	-	PF0355	-	hypothetical protein
362	 38.10	0	368300..368509	-	69	33359474	-	PF0355.1n	-	hypothetical protein
363	 38.43	0	368506..369957	-	483	18976728	-	PF0356	-	beta-galactosidase
364	 43.88	0	370134..372029	+	631	18976729	-	PF0357	-	dipeptide-binding protein
365	 41.89	0	372068..373060	+	330	18976730	-	PF0358	-	oppbc family ABC transporter
366	 41.09	0	373064..373978	+	304	18976731	-	PF0359	-	oligopeptide ABC transport system permease
367	 46.05	+1	373975..374949	+	324	18976732	-	PF0360	-	oligopeptide ABC transporter
368	 45.96	+1	374942..375907	+	321	18976733	-	PF0361	-	oligopeptide ABC transporter
369	 41.62	0	375904..376881	+	325	18976734	-	PF0362	-	glucosamine-fructose-6-phosphate aminotransferase
370	 43.77	0	376900..379218	+	772	18976735	-	PF0363	-	beta-galactosidase precursor
371	 42.95	0	379215..380150	-	311	18976736	-	PF0364	-	tyrosine-protein kinase
372	 39.89	0	380352..381266	+	304	18976737	-	PF0365	-	hypothetical protein
373	 41.96	0	381252..381842	-	196	18976738	-	PF0366	-	hypothetical protein
374	 39.33	0	381821..382621	-	266	18976739	-	PF0367	-	hypothetical protein
375	 43.25	0	382631..383386	-	251	18976740	-	PF0368	-	hypothetical protein
376	 42.34	0	383398..384396	-	332	18976741	-	PF0369	-	putative endoglucanase
377	 41.52	0	384410..385411	-	333	18976742	-	PF0370	-	2-hydroxyacid dehydrogenase
378	 45.01	+1	385602..386894	+	430	18976743	-	PF0371	-	putative transporter
379	 41.57	0	387045..387554	+	169	18976744	-	PF0372	-	molybdenum cofactor biosynthesis protein
380	 42.02	0	387603..388580	+	325	18976745	-	PF0373	-	putative ABC transporter, periplasmic binding protein
381	 42.80	0	388629..389822	+	397	18976746	-	PF0374	-	translation-associated GTPase
382	 41.27	0	389836..390276	-	146	18976747	-	PF0375	-	prefoldin subunit alpha
383	 43.16	0	390301..390534	-	77	18976748	rplX	PF0376	-	50S ribosomal protein LX
384	 43.13	0	390548..391231	-	227	18976749	-	PF0377	-	translation initiation factor IF-6
385	 45.12	+1	391258..391554	-	98	33359475	-	PF0378	-	50S ribosomal protein L31e
386	 48.08	+1	391556..391711	-	51	18976751	rpl39e	PF0379	-	50S ribosomal protein L39e
387	 43.09	0	391829..392566	+	245	33359476	-	PF0380	-	hypothetical protein
388	 42.13	0	392615..393535	+	306	18976753	-	PF0381	-	hypothetical protein
389	 43.30	0	393402..393923	+	173	18976754	-	PF0382	-	prefoldin
390	 39.29	0	393960..394295	+	111	18976755	-	PF0383	-	hypothetical protein
391	 41.19	0	394252..395244	+	330	18976756	-	PF0384	-	hypothetical protein
392	 40.98	0	395249..395575	+	108	18976757	-	PF0385	-	hypothetical protein
393	 43.25	0	395581..396306	+	241	18976758	-	PF0386	-	hypothetical protein
394	 41.89	0	396310..396648	+	112	18976759	-	PF0387	-	putative carbohydrate-binding protein
395	 38.94	0	396645..397553	-	302	18976760	-	PF0388	-	hypothetical protein
396	 44.59	0	397700..398401	+	233	18976761	-	PF0389	-	transposase
397	 41.88	0	398596..399753	+	385	18976762	-	PF0390	-	hypothetical protein
398	 45.19	+1	399753..400157	+	134	18976763	-	PF0391	-	hypothetical protein
399	 43.14	0	400111..401364	+	417	18976764	-	PF0392	-	metalloprotease
400	 35.54	-1	401435..402160	+	241	18976765	-	PF0393	-	hypothetical protein
401	 37.90	0	402144..403040	-	298	18976766	-	PF0394	-	UDP-n-acetylglucosamine-dolichyl-phosphate n-acetylglucosaminephosphotransferase
402	 39.36	0	403030..403560	-	176	18976767	-	PF0395	-	oxetanocin-like protein
403	 39.97	0	403571..404143	-	190	18976768	-	PF0396	-	hypothetical protein
404	 39.04	0	403941..404501	+	186	18976769	-	PF0397	-	GTP-binding protein
405	 41.87	0	404502..405005	-	167	18976770	-	PF0398	-	hypothetical protein
406	 43.50	0	405007..407229	-	740	18976771	-	PF0399	-	s1p family ribosomal protein
407	 39.80	0	407242..408231	-	329	18976772	-	PF0400	-	hypothetical protein
408	 36.79	-1	408267..408845	-	192	18976773	-	PF0401	-	methyltransferase
409	 41.22	0	408966..409916	-	316	18976774	-	PF0402	-	UDP- or dTTP-glucose 4-epimerase or 4-6-dehydratase
410	 35.47	-1	409922..410437	-	171	18976775	-	PF0403	-	hypothetical protein
411	 37.31	0	410434..411690	-	418	18976776	-	PF0404	-	hypothetical protein
412	 39.44	0	411687..412619	-	310	18976777	-	PF0405	-	methanol dehydrogenase regulatory protein
413	 35.49	-1	412570..413634	-	354	18976778	-	PF0406	-	hypothetical protein
414	 39.04	0	413429..413656	+	75	33359477	-	PF0406.1n	-	hypothetical protein
415	 34.48	-1	413631..415454	-	607	18976779	-	PF0407	-	hypothetical protein
416	 44.73	+1	415421..416122	-	233	18976780	-	PF0408	-	transposase
417	 38.65	0	416244..417014	+	256	18976781	-	PF0409	-	hypothetical protein
418	 35.98	-1	417004..417267	+	87	18976782	-	PF0410	-	hypothetical protein
419	 39.34	0	417264..419495	+	743	18976783	-	PF0411	-	protein-export membrane protein
420	 39.00	0	419492..420496	-	334	18976784	-	PF0412	-	hypothetical protein
421	 37.48	0	420500..421126	-	208	18976785	-	PF0413	-	hypothetical protein
422	 38.48	0	421177..421662	+	161	18976786	-	PF0414	-	hypothetical protein
423	 39.23	0	421621..422808	-	395	18976787	-	PF0415	-	dehydrogenase
424	 33.82	-1	422811..423626	-	271	18976788	-	PF0416	-	hypothetical protein
425	 38.83	0	423623..424822	-	399	18976789	-	PF0417	-	hypothetical protein
426	 42.66	0	424832..425785	-	317	18976790	-	PF0418	-	methanol dehydrogenase regulatory protein
427	 40.63	0	425775..426761	-	328	18976791	-	PF0419	-	hypothetical protein
428	 39.56	0	426743..429601	-	952	18976792	-	PF0420	-	hypothetical protein
429	 42.52	0	429657..430799	-	380	18976793	purP	PF0421	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
430	 42.42	0	430811..432130	-	439	18976794	-	PF0422	-	phosphoribosylamine--glycine ligase
431	 31.37	-2	432279..432431	+	50	18976795	-	PF0423	-	hypothetical protein
432	 36.42	-1	432443..432961	+	172	18976796	-	PF0424	-	hypothetical protein
433	 39.08	0	432964..433728	+	254	18976797	-	PF0425	-	hypothetical protein
434	 40.48	0	433790..434908	+	372	18976798	-	PF0426	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
435	 41.13	0	434901..435413	+	170	18976799	-	PF0427	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
436	 36.22	-1	435498..435947	+	149	18976800	-	PF0428	-	partial alanyl-tRNA synthetase matches COOH terminus
437	 41.36	0	435969..437450	-	493	18976801	-	PF0429	-	putative proline permease
438	 42.42	0	437779..437877	-	32	33359478	-	PF0429.1n	-	transposase
439	 45.97	+1	438413..439702	-	429	18976802	purT	PF0430	-	phosphoribosylglycinamide formyltransferase 2
440	 41.49	0	439838..440842	+	334	18976803	-	PF0431	-	phosphoribosylaminoimidazole synthetase
441	 40.02	0	440866..441687	+	273	18976804	-	PF0432	-	putative sugar-catabolism phosphotransferase
442	 39.74	0	442034..442189	+	51	18976805	-	PF0433	-	methyl-accepting chemotaxis related protein
443	 35.99	-1	442192..442530	-	112	18976806	-	PF0434	-	hypothetical protein
444	 42.24	0	442921..443268	-	115	33359479	-	PF0432.3n	-	hypothetical protein
445	 48.46	+2	443269..444636	+	455	18976807	-	PF0435	-	DEXX-box atpase
446	 47.69	+1	445419..446393	-	324	18976808	-	PF0436	-	hypothetical protein
447	 37.11	-1	446395..447693	-	432	18976809	-	PF0437	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.