IslandPathversion 1.0

IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.88 STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
287	 44.08	0	293174..293815	+	213	18976654	-	PF0282	-	hypothetical protein
288	 48.19	+1	293850..294125	+	91	18976655	-	PF0283	-	putative acylphosphatase
289	 41.79	0	294115..294705	-	196	33359465	-	PF0284	-	hypothetical protein
290	 45.95	+1	294806..296263	+	485	18976657	-	PF0285	-	inositol-5-monophosphate dehydrogenase
291	 40.78	0	296416..297234	+	272	18976658	-	PF0286	-	hypothetical protein
292	 43.20	0	297558..301754	+	1398	18976659	-	PF0287	-	pyrolysin
293	 36.01	-1	301780..302415	-	211	18976660	-	PF0288	-	hypothetical protein
294	 43.20	0	302436..304310	+	624	18976661	-	PF0289	-	phosphoenolpyruvate carboxykinase
295	 44.99	+1	304315..306990	-	891	18976662	valS	PF0290	-	valyl-tRNA synthetase
296	 40.70	0	307149..307949	-	266	18976663	-	PF0291	-	prephenate dehydratase
297	 43.23	0	307989..308978	-	329	18976664	-	PF0292	-	putative deoxyhypusine synthase
298	 40.44	0	309015..309971	-	318	18976665	-	PF0293	-	putative aminotransferase
299	 41.78	0	309968..310393	-	141	18976666	-	PF0294	-	low temperature requirement C - like protein
300	 41.38	0	310341..311036	-	231	18976667	-	PF0295	-	n-type ATP pyrophosphatase superfamily protein
301	 43.94	0	311040..311897	-	285	18976668	cobD	PF0296	-	cobalamin biosynthesis protein
302	 40.19	0	314195..314617	+	140	18976669	-	PF0297	-	hypothetical protein
303	 40.98	0	314674..315144	+	156	18976670	-	PF0298	-	hypothetical protein
304	 37.93	0	315141..315401	+	86	33359466	-	PF0298.1n	-	hypothetical protein
305	 43.09	0	315361..316047	+	228	18976671	cobS	PF0299	-	cobalamin synthase
306	 47.64	+1	316044..316595	+	183	18976672	-	PF0300	-	hypothetical protein
307	 44.15	0	316573..318024	-	483	18976673	-	PF0301	-	cobyric acid synthase
308	 42.46	0	318028..318882	-	284	18976674	-	PF0302	-	co-factor modifying protein
309	 46.89	+1	318794..319789	+	331	18976675	-	PF0303	-	hypothetical protein
310	 44.70	+1	319823..321151	-	442	18976676	-	PF0304	-	DEXX-box atpase
311	 44.16	0	321323..321904	-	193	18976677	-	PF0305	-	hypothetical protein
312	 45.61	+1	321906..322931	-	341	18976678	-	PF0306	-	sua5 superfamily-related protein
313	 42.04	0	322928..323938	-	336	18976679	-	PF0307	-	glycosyltransferase
314	 47.25	+1	324065..325084	+	339	18976680	-	PF0308	-	adenylosuccinate synthetase
315	 41.24	0	325274..326551	-	425	18976681	-	PF0309	-	ABC transporter
316	 42.87	0	326544..327413	-	289	18976682	-	PF0310	-	daunorubicin resistance ATP-binding protein drrA
317	 42.45	0	327278..327628	-	116	18976683	-	PF0311	-	hypothetical protein
318	 43.06	0	327695..329062	-	455	18976684	-	PF0312	-	ADP-specific phosphofructokinase
319	 41.86	0	329163..329420	-	85	18976685	-	PF0313	-	signal sequence peptidase I
320	 40.95	0	329475..329684	-	69	18976686	-	PF0314	-	signal peptidase
321	 40.59	0	329612..330190	-	192	33359467	-	PF0315	-	hypothetical protein
322	 35.14	-1	330225..331277	+	350	18976688	-	PF0316	-	hypothetical protein
323	 41.52	0	331274..332116	+	280	18976689	-	PF0317	-	hypothetical protein
324	 40.69	0	332150..334012	+	620	18976690	-	PF0318	-	acylaminoacyl-peptidase
325	 41.84	0	334060..335070	-	336	18976691	-	PF0319	-	glyoxylate reductase
326	 34.66	-1	335118..336095	+	325	18976692	-	PF0320	-	hypothetical protein
327	 40.71	0	336067..337245	-	392	18976693	-	PF0321	-	related to inosine monophosphate dehydrogenase
328	 39.33	0	337346..337762	-	138	18976694	-	PF0322	-	nickel responsive regulator
329	 35.60	-1	338238..338678	+	146	18976695	-	PF0323	-	hypothetical protein
330	 43.56	0	338773..339378	+	201	18976696	-	PF0324	-	hypothetical protein
331	 45.32	+1	339395..339928	+	177	18976697	-	PF0325	-	hypothetical protein
332	 40.20	0	339936..340940	+	334	33359468	-	PF0326	-	hypothetical protein
333	 42.19	0	340937..341320	+	127	18976699	-	PF0327	-	hypothetical protein
334	 41.02	0	341307..342230	+	307	18976700	-	PF0328	-	hypothetical protein
335	 39.41	0	342178..344151	-	657	33359469	-	PF0329	-	hypothetical protein
336	 39.78	0	344148..345854	-	568	18976702	-	PF0330	-	flagellar assembly protein J
337	 41.14	0	345866..347479	-	537	18976703	-	PF0331	-	putative type II secretion system protein
338	 40.81	0	347500..348114	-	204	18976704	-	PF0332	-	flagellar accessory protein FlaH
339	 39.34	0	348225..348707	-	160	18976705	-	PF0333	-	putative flagella-related protein g
340	 41.58	0	348707..349264	-	185	18976706	-	PF0334	-	putative flagella-related protein
341	 42.02	0	349245..350453	-	402	18976707	-	PF0335	-	flagella-related protein d, putative
342	 38.99	0	350457..350933	-	158	18976708	-	PF0336	-	hypothetical protein
343	 44.28	0	350944..351738	-	264	18976709	-	PF0337	-	flagellin
344	 44.11	0	351748..352341	-	197	18976710	-	PF0338	-	flagellin
345	 37.85	0	352470..353420	-	316	18976711	-	PF0339	-	methyltransferase
346	 40.67	0	353433..353759	-	108	18976712	-	PF0340	-	putative HTH transcription regulator
347	 38.49	0	353954..354922	+	322	18976713	-	PF0341	-	hypothetical protein
348	 39.73	0	354894..355643	-	249	33359470	-	PF0342	-	hypothetical protein
349	 44.71	+1	355681..356946	-	421	18976715	-	PF0343	-	S-adenosyl-L-homocysteine hydrolase
350	 44.62	0	356987..358120	-	377	18976716	-	PF0344	-	tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein
351	 43.78	0	358122..358370	-	82	18976717	-	PF0345	-	molybdopterin converting factor, subunit 1
352	 46.26	+1	358419..360236	-	605	18976718	-	PF0346	-	aldehyde:ferredoxin oxidoreductase
353	 41.31	0	360431..361408	+	325	18976719	-	PF0347	-	hypothetical protein
354	 44.59	0	361528..362229	-	233	18976720	-	PF0348	-	transposase
355	 38.67	0	362400..363074	-	224	18976721	-	PF0349	-	hypothetical protein
356	 40.85	0	363090..363914	-	274	18976722	-	PF0350	-	putative cation antiporter
357	 36.71	-1	364274..365131	-	285	18976723	-	PF0351	-	hypothetical protein
358	 38.41	0	365038..365628	-	196	33359471	-	PF0352	-	hypothetical protein
359	 40.64	0	365787..366935	-	382	33359472	-	PF0353	-	hypothetical protein
360	 40.17	0	367052..367855	+	267	18976726	-	PF0354	-	hypothetical protein
361	 37.50	0	367848..368303	-	151	33359473	-	PF0355	-	hypothetical protein
362	 38.10	0	368300..368509	-	69	33359474	-	PF0355.1n	-	hypothetical protein
363	 38.43	0	368506..369957	-	483	18976728	-	PF0356	-	beta-galactosidase
364	 43.88	0	370134..372029	+	631	18976729	-	PF0357	-	dipeptide-binding protein
365	 41.89	0	372068..373060	+	330	18976730	-	PF0358	-	oppbc family ABC transporter
366	 41.09	0	373064..373978	+	304	18976731	-	PF0359	-	oligopeptide ABC transport system permease
367	 46.05	+1	373975..374949	+	324	18976732	-	PF0360	-	oligopeptide ABC transporter
368	 45.96	+1	374942..375907	+	321	18976733	-	PF0361	-	oligopeptide ABC transporter
369	 41.62	0	375904..376881	+	325	18976734	-	PF0362	-	glucosamine-fructose-6-phosphate aminotransferase
370	 43.77	0	376900..379218	+	772	18976735	-	PF0363	-	beta-galactosidase precursor
371	 42.95	0	379215..380150	-	311	18976736	-	PF0364	-	tyrosine-protein kinase
372	 39.89	0	380352..381266	+	304	18976737	-	PF0365	-	hypothetical protein
373	 41.96	0	381252..381842	-	196	18976738	-	PF0366	-	hypothetical protein
374	 39.33	0	381821..382621	-	266	18976739	-	PF0367	-	hypothetical protein
375	 43.25	0	382631..383386	-	251	18976740	-	PF0368	-	hypothetical protein
376	 42.34	0	383398..384396	-	332	18976741	-	PF0369	-	putative endoglucanase
377	 41.52	0	384410..385411	-	333	18976742	-	PF0370	-	2-hydroxyacid dehydrogenase
378	 45.01	+1	385602..386894	+	430	18976743	-	PF0371	-	putative transporter
379	 41.57	0	387045..387554	+	169	18976744	-	PF0372	-	molybdenum cofactor biosynthesis protein
380	 42.02	0	387603..388580	+	325	18976745	-	PF0373	-	putative ABC transporter, periplasmic binding protein
381	 42.80	0	388629..389822	+	397	18976746	-	PF0374	-	translation-associated GTPase
382	 41.27	0	389836..390276	-	146	18976747	-	PF0375	-	prefoldin subunit alpha
383	 43.16	0	390301..390534	-	77	18976748	rplX	PF0376	-	50S ribosomal protein LX
384	 43.13	0	390548..391231	-	227	18976749	-	PF0377	-	translation initiation factor IF-6
385	 45.12	+1	391258..391554	-	98	33359475	-	PF0378	-	50S ribosomal protein L31e
386	 48.08	+1	391556..391711	-	51	18976751	rpl39e	PF0379	-	50S ribosomal protein L39e
40.88	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.