IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
252	 36.57	-1	256063..257019	-	318	33359464	-	PF0247	-	putative HTH transcription regulator
253	 41.10	0	257146..257634	+	162	18976620	-	PF0248	-	hypothetical protein
254	 37.81	0	257646..258203	+	185	18976621	-	PF0249	-	ham1 protein
255	 41.46	0	258208..258687	+	159	18976622	-	PF0250	-	Lrp family transcriptional regulator
256	 42.86	0	259043..260239	+	398	18976623	-	PF0251	-	hypothetical protein
257	 49.67	+2	262329..262481	-	50	18976624	-	PF0252	-	30S ribosomal protein S27ae
258	 41.00	0	262484..262783	-	99	18976625	rps24e	PF0253	-	30S ribosomal protein S24e
259	 39.51	0	262773..263306	-	177	18976626	-	PF0254	-	hypothetical protein
260	 40.86	0	263306..263491	-	61	18976627	-	PF0255	-	DNA-directed RNA polymerase subunit E''
261	 41.40	0	263488..264057	-	189	18976628	-	PF0256	-	DNA-directed RNA polymerase subunit E'
262	 43.20	0	264096..264632	-	178	18976629	-	PF0257	-	inorganic pyrophosphatase
263	 39.36	0	264702..265547	-	281	18976630	-	PF0258	-	putative endonuclease IV
264	 39.60	0	265619..265921	+	100	18976631	-	PF0259	-	hypothetical protein
265	 40.58	0	265918..267048	+	376	18976632	-	PF0260	-	hypothetical protein
266	 40.26	0	267040..269811	-	923	18976633	-	PF0261	-	hypothetical protein
267	 41.61	0	269798..272044	-	748	18976634	-	PF0262	-	MFS family transporter
268	 41.43	0	272118..272636	+	172	18976635	-	PF0263	-	hypothetical protein
269	 40.80	0	272706..274004	-	432	18976636	hisS	PF0264	-	histidyl-tRNA synthetase
270	 46.21	+1	274108..275295	+	395	18976637	-	PF0265	-	2-amino-3-ketobutyrate coenzyme A ligase
271	 41.33	0	276009..276521	-	170	18976638	-	PF0266	-	tRNA-splicing endonuclease subunit alpha
272	 40.16	0	276518..277030	-	170	18976639	-	PF0267	-	ribosomal protein s18 alanine acetyltransferase
273	 41.71	0	277117..278250	+	377	18976640	-	PF0268	-	Na+/H+ antiporter - like protein
274	 36.70	-1	278344..278610	+	88	18976641	-	PF0269	-	hypothetical protein
275	 43.46	0	278656..281400	+	914	18976642	alaS	PF0270	-	alanyl-tRNA synthetase
276	 34.85	-1	281405..281866	-	153	18976643	-	PF0271	-	hypothetical protein
277	 41.60	0	281958..283928	+	656	18976644	-	PF0272	-	alpha-amylase
278	 40.96	0	283979..284830	-	283	18976645	-	PF0273	-	n-type ATP pyrophosphatase superfamily protein
279	 44.59	0	285056..285757	+	233	18976646	-	PF0274	-	transposase
280	 40.61	0	285783..286922	+	379	18976647	-	PF0275	-	Na+/H+ antiporter
281	 42.84	0	286923..288374	-	483	18976648	-	PF0276	-	oxidoreductase
282	 38.76	0	288420..290576	-	718	18976649	-	PF0277	-	hypothetical protein
283	 39.80	0	290580..291368	-	262	18976650	-	PF0278	-	hypothetical protein
284	 40.58	0	291361..292299	-	312	18976651	-	PF0279	-	putative ABC transporter
285	 45.08	+1	292337..292651	-	104	18976652	-	PF0280	-	hypothetical protein
286	 42.89	0	292693..293079	-	128	18976653	-	PF0281	-	hypothetical protein
287	 44.08	0	293174..293815	+	213	18976654	-	PF0282	-	hypothetical protein
288	 48.19	+1	293850..294125	+	91	18976655	-	PF0283	-	putative acylphosphatase
289	 41.79	0	294115..294705	-	196	33359465	-	PF0284	-	hypothetical protein
290	 45.95	+1	294806..296263	+	485	18976657	-	PF0285	-	inositol-5-monophosphate dehydrogenase
291	 40.78	0	296416..297234	+	272	18976658	-	PF0286	-	hypothetical protein
292	 43.20	0	297558..301754	+	1398	18976659	-	PF0287	-	pyrolysin
293	 36.01	-1	301780..302415	-	211	18976660	-	PF0288	-	hypothetical protein
294	 43.20	0	302436..304310	+	624	18976661	-	PF0289	-	phosphoenolpyruvate carboxykinase
295	 44.99	+1	304315..306990	-	891	18976662	valS	PF0290	-	valyl-tRNA synthetase
296	 40.70	0	307149..307949	-	266	18976663	-	PF0291	-	prephenate dehydratase
297	 43.23	0	307989..308978	-	329	18976664	-	PF0292	-	putative deoxyhypusine synthase
298	 40.44	0	309015..309971	-	318	18976665	-	PF0293	-	putative aminotransferase
299	 41.78	0	309968..310393	-	141	18976666	-	PF0294	-	low temperature requirement C - like protein
300	 41.38	0	310341..311036	-	231	18976667	-	PF0295	-	n-type ATP pyrophosphatase superfamily protein
301	 43.94	0	311040..311897	-	285	18976668	cobD	PF0296	-	cobalamin biosynthesis protein
302	 40.19	0	314195..314617	+	140	18976669	-	PF0297	-	hypothetical protein
303	 40.98	0	314674..315144	+	156	18976670	-	PF0298	-	hypothetical protein
304	 37.93	0	315141..315401	+	86	33359466	-	PF0298.1n	-	hypothetical protein
305	 43.09	0	315361..316047	+	228	18976671	cobS	PF0299	-	cobalamin synthase
306	 47.64	+1	316044..316595	+	183	18976672	-	PF0300	-	hypothetical protein
307	 44.15	0	316573..318024	-	483	18976673	-	PF0301	-	cobyric acid synthase
308	 42.46	0	318028..318882	-	284	18976674	-	PF0302	-	co-factor modifying protein
309	 46.89	+1	318794..319789	+	331	18976675	-	PF0303	-	hypothetical protein
310	 44.70	+1	319823..321151	-	442	18976676	-	PF0304	-	DEXX-box atpase
311	 44.16	0	321323..321904	-	193	18976677	-	PF0305	-	hypothetical protein
312	 45.61	+1	321906..322931	-	341	18976678	-	PF0306	-	sua5 superfamily-related protein
313	 42.04	0	322928..323938	-	336	18976679	-	PF0307	-	glycosyltransferase
314	 47.25	+1	324065..325084	+	339	18976680	-	PF0308	-	adenylosuccinate synthetase
315	 41.24	0	325274..326551	-	425	18976681	-	PF0309	-	ABC transporter
316	 42.87	0	326544..327413	-	289	18976682	-	PF0310	-	daunorubicin resistance ATP-binding protein drrA
317	 42.45	0	327278..327628	-	116	18976683	-	PF0311	-	hypothetical protein
318	 43.06	0	327695..329062	-	455	18976684	-	PF0312	-	ADP-specific phosphofructokinase
319	 41.86	0	329163..329420	-	85	18976685	-	PF0313	-	signal sequence peptidase I
320	 40.95	0	329475..329684	-	69	18976686	-	PF0314	-	signal peptidase
321	 40.59	0	329612..330190	-	192	33359467	-	PF0315	-	hypothetical protein
322	 35.14	-1	330225..331277	+	350	18976688	-	PF0316	-	hypothetical protein
323	 41.52	0	331274..332116	+	280	18976689	-	PF0317	-	hypothetical protein
324	 40.69	0	332150..334012	+	620	18976690	-	PF0318	-	acylaminoacyl-peptidase
325	 41.84	0	334060..335070	-	336	18976691	-	PF0319	-	glyoxylate reductase
326	 34.66	-1	335118..336095	+	325	18976692	-	PF0320	-	hypothetical protein
327	 40.71	0	336067..337245	-	392	18976693	-	PF0321	-	related to inosine monophosphate dehydrogenase
328	 39.33	0	337346..337762	-	138	18976694	-	PF0322	-	nickel responsive regulator
329	 35.60	-1	338238..338678	+	146	18976695	-	PF0323	-	hypothetical protein
330	 43.56	0	338773..339378	+	201	18976696	-	PF0324	-	hypothetical protein
331	 45.32	+1	339395..339928	+	177	18976697	-	PF0325	-	hypothetical protein
332	 40.20	0	339936..340940	+	334	33359468	-	PF0326	-	hypothetical protein
333	 42.19	0	340937..341320	+	127	18976699	-	PF0327	-	hypothetical protein
334	 41.02	0	341307..342230	+	307	18976700	-	PF0328	-	hypothetical protein
335	 39.41	0	342178..344151	-	657	33359469	-	PF0329	-	hypothetical protein
336	 39.78	0	344148..345854	-	568	18976702	-	PF0330	-	flagellar assembly protein J
337	 41.14	0	345866..347479	-	537	18976703	-	PF0331	-	putative type II secretion system protein
338	 40.81	0	347500..348114	-	204	18976704	-	PF0332	-	flagellar accessory protein FlaH
339	 39.34	0	348225..348707	-	160	18976705	-	PF0333	-	putative flagella-related protein g
340	 41.58	0	348707..349264	-	185	18976706	-	PF0334	-	putative flagella-related protein
341	 42.02	0	349245..350453	-	402	18976707	-	PF0335	-	flagella-related protein d, putative
342	 38.99	0	350457..350933	-	158	18976708	-	PF0336	-	hypothetical protein
343	 44.28	0	350944..351738	-	264	18976709	-	PF0337	-	flagellin
344	 44.11	0	351748..352341	-	197	18976710	-	PF0338	-	flagellin
345	 37.85	0	352470..353420	-	316	18976711	-	PF0339	-	methyltransferase
346	 40.67	0	353433..353759	-	108	18976712	-	PF0340	-	putative HTH transcription regulator
347	 38.49	0	353954..354922	+	322	18976713	-	PF0341	-	hypothetical protein
348	 39.73	0	354894..355643	-	249	33359470	-	PF0342	-	hypothetical protein
349	 44.71	+1	355681..356946	-	421	18976715	-	PF0343	-	S-adenosyl-L-homocysteine hydrolase
350	 44.62	0	356987..358120	-	377	18976716	-	PF0344	-	tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein
351	 43.78	0	358122..358370	-	82	18976717	-	PF0345	-	molybdopterin converting factor, subunit 1
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.