IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
211	 40.00	0	224091..225470	+	459	18976580	-	PF0208	-	argininosuccinate lyase
212	 39.42	0	225439..226260	+	273	18976581	-	PF0209	-	ribosomal protein s6 modification protein
213	 41.70	0	226257..227870	-	537	18976582	-	PF0210	-	putative oxidative cyclase
214	 37.89	0	228005..228619	+	204	18976583	-	PF0211	-	hypothetical protein
215	 39.30	0	228606..230933	-	775	18976584	-	PF0212	-	DNA-directed DNA polymerase
216	 42.19	0	231034..231846	+	270	18976585	-	PF0213	-	hypothetical protein
217	 39.68	0	231843..232583	-	246	18976586	-	PF0214	-	n-type ATP pyrophosphatase
218	 45.55	+1	232621..233913	-	430	18976587	eno	PF0215	-	phosphopyruvate hydratase
219	 35.95	-1	233948..234520	-	190	18976588	maf	PF0216	-	Maf-like protein
220	 43.86	0	234645..234929	+	94	161484704	rpl44e	PF0217	-	50S ribosomal protein L44e
221	 40.10	0	234934..235125	+	63	18976590	rps27e	PF0218	-	30S ribosomal protein S27e
222	 34.43	-1	235100..235555	-	151	18976591	-	PF0219	-	putative 6-pyruvoyl tetrahydrobiopterin synthase
223	 41.23	0	235489..236793	+	434	18976592	-	PF0220	-	hexulose-6-phosphate synthase (d-arabino 3-hexulose 6-phosphate formaldehyde lyase)
224	 36.67	-1	236943..237632	+	229	18976593	-	PF0221	-	hypothetical protein
225	 38.79	0	237626..238285	+	219	18976594	-	PF0222	-	hydrolase related to 2-haloalkanoic acid dehalogenase
226	 34.43	-1	238269..238451	+	60	33359459	-	PF0222.1n	-	hypothetical protein
227	 39.04	0	238448..239236	+	262	18976595	-	PF0223	-	hypothetical protein
228	 41.46	0	239229..239843	-	204	18976596	-	PF0224	-	hypothetical protein
229	 38.76	0	239785..240171	+	128	18976597	-	PF0225	-	N-acetyltransferase
230	 42.12	0	240105..240377	+	90	18976598	-	PF0226	-	hypothetical protein
231	 30.23	-2	240484..240612	-	42	33359460	-	PF0226.1n	-	hypothetical protein
232	 36.46	-1	240581..240772	-	63	18976599	-	PF0227	-	hypothetical protein
233	 41.18	0	240797..241000	-	67	18976600	-	PF0228	-	hypothetical protein
234	 36.78	-1	240936..242504	-	522	18976601	-	PF0229	-	hypothetical protein
235	 38.00	0	242646..243224	+	192	18976602	-	PF0230	-	ArsR family transcriptional regulator
236	 41.83	0	243233..243538	+	101	18976603	-	PF0231	-	hypothetical protein
237	 37.59	0	243538..244101	+	187	18976604	-	PF0232	-	ArsR family transcriptional regulator
238	 43.28	0	244161..245558	+	465	18976605	-	PF0233	-	hypothetical protein
239	 37.52	0	245544..246617	-	357	18976606	-	PF0234	-	hypothetical protein
240	 39.43	0	246614..247876	-	420	18976607	-	PF0235	-	glucose-1-phosphate thymidylyltransferase
241	 39.17	0	247929..248768	-	279	18976608	-	PF0236	-	ribose-phosphate pyrophosphokinase
242	 38.79	0	248781..249476	-	231	33359461	-	PF0237	-	hypothetical protein
243	 37.53	0	249473..249877	-	134	33359462	-	PF0238	-	hypothetical protein
244	 39.72	0	249878..250159	-	93	33359463	-	PF0239	-	hypothetical protein
245	 44.72	+1	250877..251719	+	280	18976612	-	PF0240	-	hypothetical protein
246	 39.38	0	251788..252945	-	385	18976613	-	PF0241	-	tryptophanyl-tRNA synthetase
247	 46.03	+1	253396..253584	-	62	18976614	-	PF0242	-	transposase
248	 52.57	+2	253719..254945	-	408	18976615	-	PF0243	-	DEXX-box atpase
249	 47.45	+1	254994..255248	-	84	18976616	-	PF0244	-	hypothetical protein
250	 45.54	+1	255427..255729	-	100	18976617	-	PF0245	-	hypothetical protein
251	 32.69	-2	255759..256070	+	103	18976618	-	PF0246	-	hypothetical protein
252	 36.57	-1	256063..257019	-	318	33359464	-	PF0247	-	putative HTH transcription regulator
253	 41.10	0	257146..257634	+	162	18976620	-	PF0248	-	hypothetical protein
254	 37.81	0	257646..258203	+	185	18976621	-	PF0249	-	ham1 protein
255	 41.46	0	258208..258687	+	159	18976622	-	PF0250	-	Lrp family transcriptional regulator
256	 42.86	0	259043..260239	+	398	18976623	-	PF0251	-	hypothetical protein
257	 49.67	+2	262329..262481	-	50	18976624	-	PF0252	-	30S ribosomal protein S27ae
258	 41.00	0	262484..262783	-	99	18976625	rps24e	PF0253	-	30S ribosomal protein S24e
259	 39.51	0	262773..263306	-	177	18976626	-	PF0254	-	hypothetical protein
260	 40.86	0	263306..263491	-	61	18976627	-	PF0255	-	DNA-directed RNA polymerase subunit E''
261	 41.40	0	263488..264057	-	189	18976628	-	PF0256	-	DNA-directed RNA polymerase subunit E'
262	 43.20	0	264096..264632	-	178	18976629	-	PF0257	-	inorganic pyrophosphatase
263	 39.36	0	264702..265547	-	281	18976630	-	PF0258	-	putative endonuclease IV
264	 39.60	0	265619..265921	+	100	18976631	-	PF0259	-	hypothetical protein
265	 40.58	0	265918..267048	+	376	18976632	-	PF0260	-	hypothetical protein
266	 40.26	0	267040..269811	-	923	18976633	-	PF0261	-	hypothetical protein
267	 41.61	0	269798..272044	-	748	18976634	-	PF0262	-	MFS family transporter
268	 41.43	0	272118..272636	+	172	18976635	-	PF0263	-	hypothetical protein
269	 40.80	0	272706..274004	-	432	18976636	hisS	PF0264	-	histidyl-tRNA synthetase
270	 46.21	+1	274108..275295	+	395	18976637	-	PF0265	-	2-amino-3-ketobutyrate coenzyme A ligase
271	 41.33	0	276009..276521	-	170	18976638	-	PF0266	-	tRNA-splicing endonuclease subunit alpha
272	 40.16	0	276518..277030	-	170	18976639	-	PF0267	-	ribosomal protein s18 alanine acetyltransferase
273	 41.71	0	277117..278250	+	377	18976640	-	PF0268	-	Na+/H+ antiporter - like protein
274	 36.70	-1	278344..278610	+	88	18976641	-	PF0269	-	hypothetical protein
275	 43.46	0	278656..281400	+	914	18976642	alaS	PF0270	-	alanyl-tRNA synthetase
276	 34.85	-1	281405..281866	-	153	18976643	-	PF0271	-	hypothetical protein
277	 41.60	0	281958..283928	+	656	18976644	-	PF0272	-	alpha-amylase
278	 40.96	0	283979..284830	-	283	18976645	-	PF0273	-	n-type ATP pyrophosphatase superfamily protein
279	 44.59	0	285056..285757	+	233	18976646	-	PF0274	-	transposase
280	 40.61	0	285783..286922	+	379	18976647	-	PF0275	-	Na+/H+ antiporter
281	 42.84	0	286923..288374	-	483	18976648	-	PF0276	-	oxidoreductase
282	 38.76	0	288420..290576	-	718	18976649	-	PF0277	-	hypothetical protein
283	 39.80	0	290580..291368	-	262	18976650	-	PF0278	-	hypothetical protein
284	 40.58	0	291361..292299	-	312	18976651	-	PF0279	-	putative ABC transporter
285	 45.08	+1	292337..292651	-	104	18976652	-	PF0280	-	hypothetical protein
286	 42.89	0	292693..293079	-	128	18976653	-	PF0281	-	hypothetical protein
287	 44.08	0	293174..293815	+	213	18976654	-	PF0282	-	hypothetical protein
288	 48.19	+1	293850..294125	+	91	18976655	-	PF0283	-	putative acylphosphatase
289	 41.79	0	294115..294705	-	196	33359465	-	PF0284	-	hypothetical protein
290	 45.95	+1	294806..296263	+	485	18976657	-	PF0285	-	inositol-5-monophosphate dehydrogenase
291	 40.78	0	296416..297234	+	272	18976658	-	PF0286	-	hypothetical protein
292	 43.20	0	297558..301754	+	1398	18976659	-	PF0287	-	pyrolysin
293	 36.01	-1	301780..302415	-	211	18976660	-	PF0288	-	hypothetical protein
294	 43.20	0	302436..304310	+	624	18976661	-	PF0289	-	phosphoenolpyruvate carboxykinase
295	 44.99	+1	304315..306990	-	891	18976662	valS	PF0290	-	valyl-tRNA synthetase
296	 40.70	0	307149..307949	-	266	18976663	-	PF0291	-	prephenate dehydratase
297	 43.23	0	307989..308978	-	329	18976664	-	PF0292	-	putative deoxyhypusine synthase
298	 40.44	0	309015..309971	-	318	18976665	-	PF0293	-	putative aminotransferase
299	 41.78	0	309968..310393	-	141	18976666	-	PF0294	-	low temperature requirement C - like protein
300	 41.38	0	310341..311036	-	231	18976667	-	PF0295	-	n-type ATP pyrophosphatase superfamily protein
301	 43.94	0	311040..311897	-	285	18976668	cobD	PF0296	-	cobalamin biosynthesis protein
302	 40.19	0	314195..314617	+	140	18976669	-	PF0297	-	hypothetical protein
303	 40.98	0	314674..315144	+	156	18976670	-	PF0298	-	hypothetical protein
304	 37.93	0	315141..315401	+	86	33359466	-	PF0298.1n	-	hypothetical protein
305	 43.09	0	315361..316047	+	228	18976671	cobS	PF0299	-	cobalamin synthase
306	 47.64	+1	316044..316595	+	183	18976672	-	PF0300	-	hypothetical protein
307	 44.15	0	316573..318024	-	483	18976673	-	PF0301	-	cobyric acid synthase
308	 42.46	0	318028..318882	-	284	18976674	-	PF0302	-	co-factor modifying protein
309	 46.89	+1	318794..319789	+	331	18976675	-	PF0303	-	hypothetical protein
310	 44.70	+1	319823..321151	-	442	18976676	-	PF0304	-	DEXX-box atpase
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.