IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2026	 38.17	0	1822744..1823466	-	240	18978345	-	PF1973	-	hypothetical protein
2027	 49.39	+2	1823620..1825269	+	549	18978346	-	PF1974	-	thermosome, single subunit
2028	 40.31	0	1825412..1826830	+	472	18978347	-	PF1975	-	phosphoenolpyruvate carboxylase
2029	 42.44	0	1826876..1828270	+	464	18978348	-	PF1976	-	L-aspartate oxidase
2030	 43.86	0	1828315..1829226	+	303	18978349	-	PF1977	-	quinolinate synthetase
2031	 42.84	0	1829236..1830066	+	276	18978350	-	PF1978	-	nicotinate-nucleotide pyrophosphorylase
2032	 49.45	+2	1830044..1830676	-	210	18978351	-	PF1979	-	hypothetical protein
2033	 37.54	0	1830669..1831238	-	189	18978352	-	PF1980	-	hypothetical protein
2034	 44.92	+1	1831391..1832089	-	232	18978353	-	PF1981	-	hypothetical protein
2035	 43.30	0	1832161..1832973	+	270	18978354	-	PF1982	-	hypothetical protein
2036	 42.16	0	1833103..1836093	+	996	18978355	-	PF1983	-	hypothetical protein
2037	 39.26	0	1836100..1836639	+	179	18978356	-	PF1984	-	hypothetical protein
2038	 38.69	0	1836717..1837220	+	167	18978357	-	PF1985	-	hypothetical protein
2039	 36.46	-1	1837039..1837326	+	95	33359585	-	PF1984.1n	-	hypothetical protein
2040	 36.30	-1	1837301..1837435	+	44	33359586	-	PF1984.2n	-	hypothetical protein
2041	 39.40	0	1837386..1838258	+	290	18978358	-	PF1986	-	hypothetical protein
2042	 42.27	0	1838622..1839035	+	137	18978359	-	PF1987	-	hypothetical protein
2043	 46.11	+1	1839104..1840222	+	372	18978360	-	PF1988	-	cell division protein FtsZ
2044	 42.47	0	1840279..1840464	+	61	18978361	secE	PF1989	-	preprotein translocase subunit SecE
2045	 42.48	0	1840468..1840926	+	152	18978362	nusG	PF1990	-	transcription antitermination protein NusG
2046	 46.67	+1	1840938..1841432	+	164	18978363	rpl11p	PF1991	-	50S ribosomal protein L11P
2047	 48.08	+1	1841511..1842161	+	216	18978364	rpl1P	PF1992	-	50S ribosomal protein L1P
2048	 46.18	+1	1842167..1843186	+	339	18978365	rplP0	PF1993	-	acidic ribosomal protein P0
2049	 50.93	+2	1843233..1843556	+	107	18978366	rpl12p	PF1994	-	50S ribosomal protein L12P
2050	 34.44	-1	1843661..1844203	+	180	18978367	-	PF1995	-	hypothetical protein
2051	 43.31	0	1844183..1844653	-	156	18978368	dcd	PF1996	-	deoxycytidine triphosphate deaminase
2052	 33.78	-1	1845123..1845794	+	223	18978369	-	PF1997	-	hypothetical protein
2053	 40.40	0	1845822..1846529	+	235	18978370	-	PF1998	-	hypothetical protein
2054	 44.47	0	1846588..1847934	+	448	18978371	-	PF1999	-	glycine dehydrogenase subunit 1
2055	 44.47	0	1847935..1849443	+	502	18978372	-	PF2000	-	glycine dehydrogenase subunit 2
2056	 36.76	-1	1849591..1849794	-	67	33359587	-	PF2000.1n	-	hypothetical protein
2057	 39.22	0	1849763..1850629	-	288	18978373	-	PF2001	-	hypothetical protein
2058	 42.81	0	1850643..1851971	-	442	18978374	-	PF2002	-	sucrose transport protein
2059	 39.90	0	1852111..1852872	+	253	18978375	-	PF2003	-	glycerophosphodiester phosphodiesterase
2060	 43.65	0	1852917..1854389	+	490	18978376	glpK	PF2004	-	glycerol kinase
2061	 43.80	0	1854402..1855892	+	496	18978377	-	PF2005	-	glycerol-3-phosphate dehydrogenase
2062	 44.44	0	1855885..1857126	+	413	18978378	-	PF2006	-	NADH oxidase
2063	 43.59	0	1857119..1857469	+	116	18978379	-	PF2007	-	hypothetical protein
2064	 50.40	+2	1857532..1857783	+	83	18978380	rpl37ae	PF2008	-	50S ribosomal protein L37Ae
2065	 44.00	0	1857791..1857940	+	49	18978381	-	PF2009	-	DNA-directed RNA polymerase subunit P
2066	 42.56	0	1857987..1858658	+	223	18978382	-	PF2010	-	ribosomal biogenesis protein
2067	 40.96	0	1858621..1858869	+	82	18978383	-	PF2011	-	hypothetical protein
2068	 46.52	+1	1858962..1861160	+	732	18978384	-	PF2012	-	elongation factor EF-2
2069	 38.56	0	1861224..1862027	+	267	18978385	-	PF2013	-	hypothetical protein
2070	 40.39	0	1862030..1862794	+	254	18978386	-	PF2014	-	bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase
2071	 41.61	0	1862800..1865094	+	764	18978387	-	PF2015	-	Hef nuclease
2072	 41.52	0	1865225..1865395	+	56	18978388	-	PF2016	-	preprotein translocase subunit SecG
2073	 37.42	0	1865392..1866051	-	219	33359588	-	PF2017	-	hypothetical protein
2074	 39.54	0	1866088..1866909	-	273	33359589	-	PF2018	-	hypothetical protein
2075	 40.65	0	1866894..1867262	-	122	18978391	-	PF2019	-	hypothetical protein
2076	 42.43	0	1867264..1868340	-	358	18978392	-	PF2020	-	replication factor A
2077	 39.86	0	1868394..1868960	-	188	18978393	-	PF2021	-	hypothetical protein
2078	 40.27	0	1868989..1869738	-	249	18978394	-	PF2022	-	hypothetical protein
2079	 43.83	0	1869772..1870419	+	215	18978395	-	PF2023	-	DNA invertase
2080	 43.94	0	1870412..1871665	+	417	18978396	-	PF2024	-	transposase
2081	 47.78	+1	1871822..1872361	-	179	18978397	-	PF2025	-	hypothetical protein
2082	 42.09	0	1872463..1872873	+	136	18978398	-	PF2026	-	putative polyferredoxin
2083	 45.45	+1	1872542..1872607	+	21	18978399	-	PF2027	-	hypothetical protein
2084	 39.20	0	1872964..1873389	+	141	18978400	-	PF2028	-	nitrogenase reductase (n-terminus)
2085	 43.96	0	1873389..1873595	+	68	18978401	-	PF2029	-	nitrogenase reductase (c-terminus)
2086	 40.92	0	1873546..1873914	+	122	18978402	-	PF2030	-	ferredoxin-family protein
2087	 42.86	0	1873880..1874278	+	132	18978403	-	PF2031	-	iron-sulfur cluster binding protein
2088	 44.44	0	1874290..1875891	-	533	18978404	-	PF2032	-	hypothetical protein
2089	 42.09	0	1876134..1877126	+	330	18978405	-	PF2033	-	hypothetical protein
2090	 38.99	0	1877092..1877781	-	229	18978406	-	PF2034	-	hypothetical protein
2091	 44.59	0	1877748..1878449	-	233	18978407	-	PF2035	-	transposase
2092	 36.73	-1	1879256..1880314	+	352	18978408	-	PF2036	-	magnesium and cobalt transporter
2093	 34.66	-1	1880348..1881100	+	250	18978409	-	PF2037	-	hypothetical protein
2094	 44.51	0	1881861..1882388	+	175	18978410	-	PF2038	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
2095	 42.13	0	1882385..1882873	-	162	18978411	-	PF2039	-	hypothetical protein
2096	 43.66	0	1882806..1883357	-	183	18978412	-	PF2040	-	hypothetical protein
2097	 40.03	0	1883422..1884018	-	198	33359590	-	PF2041	-	hypothetical protein
2098	 43.08	0	1884068..1884652	+	194	18978414	-	PF2042	-	hypothetical protein
2099	 40.53	0	1884653..1885528	-	291	18978415	-	PF2043	-	hypothetical protein
2100	 43.07	0	1885567..1886922	+	451	18978416	-	PF2044	-	glycogen synthase
2101	 40.52	0	1886959..1887417	-	152	18978417	-	PF2045	-	hypothetical protein
2102	 42.90	0	1887478..1888167	+	229	18978418	-	PF2046	-	hypothetical protein
2103	 40.06	0	1888256..1889236	+	326	18978419	-	PF2047	-	l-asparaginase
2104	 42.54	0	1889233..1889460	-	75	33359591	-	PF2047.1n	-	hypothetical protein
2105	 40.87	0	1889624..1890964	+	446	18978420	-	PF2048	-	peptidase
2106	 36.57	-1	1890953..1891168	-	71	33359592	-	PF2048.1n	-	hypothetical protein
2107	 40.25	0	1891159..1891866	-	235	18978421	-	PF2049	-	hypothetical protein
2108	 37.42	0	1891926..1892684	-	252	18978422	-	PF2050	-	hypothetical protein
2109	 33.83	-1	1892803..1893201	+	132	18978423	-	PF2051	-	transcription regulator ArsR
2110	 35.87	-1	1893179..1893454	+	91	18978424	-	PF2052	-	putative regulatory protein
2111	 34.90	-1	1893535..1893981	+	148	18978425	-	PF2053	-	AsnC family transcriptional regulator
2112	 41.21	0	1893978..1894574	-	198	18978426	-	PF2054	-	30S ribosomal protein S3Ae
2113	 38.89	0	1894574..1894825	-	83	33359593	-	PF2054.1n	-	hypothetical protein
2114	 42.05	0	1894803..1896236	-	477	18978427	-	PF2055	-	hypothetical protein
2115	 45.28	+1	1896268..1896744	-	158	18978428	rps15p	PF2056	-	30S ribosomal protein S15P
2116	 32.75	-2	1897201..1897371	-	56	18978429	-	PF2057	-	hypothetical protein
2117	 36.87	-1	1897530..1897727	-	65	18978430	-	PF2058	-	hypothetical protein
2118	 34.92	-1	1898123..1899826	-	567	18978431	-	PF2059	-	putative aminopeptidase
2119	 35.35	-1	1899840..1900433	-	197	18978432	-	PF2060	-	hypothetical protein
2120	 28.90	-2	1900616..1901224	-	202	33359594	-	PF2060.1n	-	arylsulfatase regulatory protein
2121	 36.40	-1	1901579..1902394	+	271	18978433	-	PF2061	-	putative ABC transporter
2122	 35.09	-1	1902398..1902682	+	94	18978434	-	PF2062	-	hypothetical protein
2123	 35.95	-1	1902688..1904442	-	584	18978435	-	PF2063	-	putative aminopeptidase
2124	 32.91	-2	1904500..1905918	-	472	18978436	-	PF2064	-	arylsulfatase regulatory protein, putative
2125	 34.63	-1	1906416..1908185	-	589	18978437	-	PF2065	-	putative aminopeptidase
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.