IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1983	 39.14	0	1781493..1782302	+	269	18978304	-	PF1932	-	hypothetical protein
1984	 44.92	+1	1782299..1783411	-	370	18978305	-	PF1933	-	putative sugar transport ATP-hydrolyzing
1985	 46.67	+1	1783451..1783870	-	139	18978306	-	PF1934	-	hypothetical protein
1986	 43.34	0	1783837..1786794	-	985	18978307	-	PF1935	-	amylopullulanase
1987	 40.79	0	1786805..1788052	-	415	18978308	-	PF1936	-	putative malg-like sugar transport inner membrane protein
1988	 41.36	0	1788049..1788945	-	298	18978309	-	PF1937	-	putative malf-like sugar transport inner membrane protein
1989	 43.91	0	1788984..1790288	-	434	18978310	-	PF1938	-	putative malE-like sugar binding protein
1990	 37.46	0	1790387..1792324	-	645	18978311	-	PF1939	-	neopullulanase (alpha-amylase II)
1991	 41.01	0	1792371..1792748	-	125	33359583	-	PF1939.1n	-	hypothetical protein
1992	 35.73	-1	1792853..1793353	-	166	18978312	-	PF1940	-	hypothetical protein
1993	 45.13	+1	1793343..1793537	-	64	33359584	-	PF1940.1n	-	hypothetical protein
1994	 38.91	0	1793572..1795095	-	507	18978313	-	PF1941	-	dihydropteroate synthase
1995	 40.90	0	1795097..1796563	-	488	18978314	-	PF1942	-	hypothetical protein
1996	 36.68	-1	1796669..1797235	+	188	18978315	-	PF1943	-	hypothetical protein
1997	 37.47	0	1797159..1798391	+	410	18978316	-	PF1944	-	hypothetical protein
1998	 38.54	0	1798437..1799051	-	204	18978317	-	PF1945	-	n-type ATP pyrophosphatase superfamily protein
1999	 41.84	0	1799153..1799587	+	144	18978318	-	PF1946	-	methylmalonyl-CoAmutase, subunit alpha
2000	 40.06	0	1799630..1800595	+	321	18978319	-	PF1947	-	hypothetical protein
2001	 41.79	0	1800588..1800989	+	133	18978320	-	PF1948	-	hypothetical protein
2002	 33.80	-1	1800990..1801202	-	70	18978321	-	PF1949	-	hypothetical protein
2003	 45.06	+1	1801271..1801918	-	215	18978322	-	PF1950	-	xanthine-guanine phosphoribosyltransferase
2004	 41.13	0	1801964..1802848	-	294	18978323	-	PF1951	-	asparagine synthetase A
2005	 39.77	0	1802989..1804914	-	641	18978324	-	PF1952	-	hypothetical protein
2006	 40.19	0	1804967..1805506	+	179	18978325	-	PF1953	-	inosine-5'-monophosphate dehydrogenase related protein II
2007	 39.18	0	1805557..1806291	-	244	18978326	-	PF1954	-	hypothetical protein
2008	 41.20	0	1806301..1806516	-	71	18978327	-	PF1955	-	hypothetical protein
2009	 45.15	+1	1806615..1807460	+	281	18978328	-	PF1956	-	fructose-bisphosphate aldolase
2010	 42.75	0	1807417..1808382	+	321	18978329	-	PF1957	-	agmatinase
2011	 43.25	0	1808379..1808852	+	157	18978330	-	PF1958	-	hypothetical protein
2012	 45.47	+1	1808901..1810136	+	411	18978331	-	PF1959	-	cofactor-independent phosphoglycerate mutase
2013	 43.37	0	1810244..1811080	+	278	18978332	-	PF1960	-	aldose reductase
2014	 46.39	+1	1811080..1812948	+	622	18978333	-	PF1961	-	tungsten-containing formaldehyde ferredoxin oxidoreductase wor4
2015	 40.16	0	1812929..1813309	-	126	18978334	-	PF1962	-	hypothetical protein
2016	 41.01	0	1813313..1814146	-	277	18978335	ubiA	PF1963	-	prenyltransferase UbiA-like protein
2017	 48.09	+1	1814247..1814429	+	60	18978336	-	PF1964	-	hypothetical protein
2018	 42.39	0	1814430..1814705	+	91	18978337	ef1B	PF1965	-	elongation factor 1-beta
2019	 37.51	0	1814702..1815706	-	334	18978338	-	PF1966	-	hypothetical protein
2020	 46.50	+1	1815891..1817174	+	427	18978339	-	PF1967	-	hypothetical protein
2021	 41.40	0	1817213..1818067	+	284	18978340	-	PF1968	-	sugar transport membrane protein
2022	 42.81	0	1818064..1818897	+	277	18978341	-	PF1969	-	sugar ABC transporter, permease protein
2023	 42.25	0	1818876..1819997	+	373	18978342	-	PF1970	-	putative multiple sugar-binding transport ATP-binding protein
2024	 43.40	0	1820217..1822034	+	605	18978343	-	PF1971	-	anaerobic ribonucleoside triphosphate reductase
2025	 41.98	0	1822044..1822760	+	238	18978344	-	PF1972	-	hypothetical protein
2026	 38.17	0	1822744..1823466	-	240	18978345	-	PF1973	-	hypothetical protein
2027	 49.39	+2	1823620..1825269	+	549	18978346	-	PF1974	-	thermosome, single subunit
2028	 40.31	0	1825412..1826830	+	472	18978347	-	PF1975	-	phosphoenolpyruvate carboxylase
2029	 42.44	0	1826876..1828270	+	464	18978348	-	PF1976	-	L-aspartate oxidase
2030	 43.86	0	1828315..1829226	+	303	18978349	-	PF1977	-	quinolinate synthetase
2031	 42.84	0	1829236..1830066	+	276	18978350	-	PF1978	-	nicotinate-nucleotide pyrophosphorylase
2032	 49.45	+2	1830044..1830676	-	210	18978351	-	PF1979	-	hypothetical protein
2033	 37.54	0	1830669..1831238	-	189	18978352	-	PF1980	-	hypothetical protein
2034	 44.92	+1	1831391..1832089	-	232	18978353	-	PF1981	-	hypothetical protein
2035	 43.30	0	1832161..1832973	+	270	18978354	-	PF1982	-	hypothetical protein
2036	 42.16	0	1833103..1836093	+	996	18978355	-	PF1983	-	hypothetical protein
2037	 39.26	0	1836100..1836639	+	179	18978356	-	PF1984	-	hypothetical protein
2038	 38.69	0	1836717..1837220	+	167	18978357	-	PF1985	-	hypothetical protein
2039	 36.46	-1	1837039..1837326	+	95	33359585	-	PF1984.1n	-	hypothetical protein
2040	 36.30	-1	1837301..1837435	+	44	33359586	-	PF1984.2n	-	hypothetical protein
2041	 39.40	0	1837386..1838258	+	290	18978358	-	PF1986	-	hypothetical protein
2042	 42.27	0	1838622..1839035	+	137	18978359	-	PF1987	-	hypothetical protein
2043	 46.11	+1	1839104..1840222	+	372	18978360	-	PF1988	-	cell division protein FtsZ
2044	 42.47	0	1840279..1840464	+	61	18978361	secE	PF1989	-	preprotein translocase subunit SecE
2045	 42.48	0	1840468..1840926	+	152	18978362	nusG	PF1990	-	transcription antitermination protein NusG
2046	 46.67	+1	1840938..1841432	+	164	18978363	rpl11p	PF1991	-	50S ribosomal protein L11P
2047	 48.08	+1	1841511..1842161	+	216	18978364	rpl1P	PF1992	-	50S ribosomal protein L1P
2048	 46.18	+1	1842167..1843186	+	339	18978365	rplP0	PF1993	-	acidic ribosomal protein P0
2049	 50.93	+2	1843233..1843556	+	107	18978366	rpl12p	PF1994	-	50S ribosomal protein L12P
2050	 34.44	-1	1843661..1844203	+	180	18978367	-	PF1995	-	hypothetical protein
2051	 43.31	0	1844183..1844653	-	156	18978368	dcd	PF1996	-	deoxycytidine triphosphate deaminase
2052	 33.78	-1	1845123..1845794	+	223	18978369	-	PF1997	-	hypothetical protein
2053	 40.40	0	1845822..1846529	+	235	18978370	-	PF1998	-	hypothetical protein
2054	 44.47	0	1846588..1847934	+	448	18978371	-	PF1999	-	glycine dehydrogenase subunit 1
2055	 44.47	0	1847935..1849443	+	502	18978372	-	PF2000	-	glycine dehydrogenase subunit 2
2056	 36.76	-1	1849591..1849794	-	67	33359587	-	PF2000.1n	-	hypothetical protein
2057	 39.22	0	1849763..1850629	-	288	18978373	-	PF2001	-	hypothetical protein
2058	 42.81	0	1850643..1851971	-	442	18978374	-	PF2002	-	sucrose transport protein
2059	 39.90	0	1852111..1852872	+	253	18978375	-	PF2003	-	glycerophosphodiester phosphodiesterase
2060	 43.65	0	1852917..1854389	+	490	18978376	glpK	PF2004	-	glycerol kinase
2061	 43.80	0	1854402..1855892	+	496	18978377	-	PF2005	-	glycerol-3-phosphate dehydrogenase
2062	 44.44	0	1855885..1857126	+	413	18978378	-	PF2006	-	NADH oxidase
2063	 43.59	0	1857119..1857469	+	116	18978379	-	PF2007	-	hypothetical protein
2064	 50.40	+2	1857532..1857783	+	83	18978380	rpl37ae	PF2008	-	50S ribosomal protein L37Ae
2065	 44.00	0	1857791..1857940	+	49	18978381	-	PF2009	-	DNA-directed RNA polymerase subunit P
2066	 42.56	0	1857987..1858658	+	223	18978382	-	PF2010	-	ribosomal biogenesis protein
2067	 40.96	0	1858621..1858869	+	82	18978383	-	PF2011	-	hypothetical protein
2068	 46.52	+1	1858962..1861160	+	732	18978384	-	PF2012	-	elongation factor EF-2
2069	 38.56	0	1861224..1862027	+	267	18978385	-	PF2013	-	hypothetical protein
2070	 40.39	0	1862030..1862794	+	254	18978386	-	PF2014	-	bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase
2071	 41.61	0	1862800..1865094	+	764	18978387	-	PF2015	-	Hef nuclease
2072	 41.52	0	1865225..1865395	+	56	18978388	-	PF2016	-	preprotein translocase subunit SecG
2073	 37.42	0	1865392..1866051	-	219	33359588	-	PF2017	-	hypothetical protein
2074	 39.54	0	1866088..1866909	-	273	33359589	-	PF2018	-	hypothetical protein
2075	 40.65	0	1866894..1867262	-	122	18978391	-	PF2019	-	hypothetical protein
2076	 42.43	0	1867264..1868340	-	358	18978392	-	PF2020	-	replication factor A
2077	 39.86	0	1868394..1868960	-	188	18978393	-	PF2021	-	hypothetical protein
2078	 40.27	0	1868989..1869738	-	249	18978394	-	PF2022	-	hypothetical protein
2079	 43.83	0	1869772..1870419	+	215	18978395	-	PF2023	-	DNA invertase
2080	 43.94	0	1870412..1871665	+	417	18978396	-	PF2024	-	transposase
2081	 47.78	+1	1871822..1872361	-	179	18978397	-	PF2025	-	hypothetical protein
2082	 42.09	0	1872463..1872873	+	136	18978398	-	PF2026	-	putative polyferredoxin
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.