IslandPathversion 1.0

IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.88 STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1913	 35.89	-1	1719412..1720233	+	273	18978235	ksgA	PF1863	-	dimethyladenosine transferase
1914	 44.59	0	1720274..1720975	-	233	18978236	-	PF1864	-	transposase
1915	 34.36	-1	1721054..1721833	+	259	18978237	-	PF1865	-	putative regulatory protein
1916	 43.37	0	1721830..1723035	-	401	18978238	-	PF1866	-	S-adenosylmethionine synthetase
1917	 40.16	0	1723182..1724060	+	292	33359578	-	PF1867	-	hypothetical protein
1918	 38.68	0	1724035..1724895	+	286	18978240	-	PF1868	-	integrase-recombinase protein
1919	 38.96	0	1724896..1725801	+	301	18978241	-	PF1869	-	hypothetical protein
1920	 35.65	-1	1725794..1726009	+	71	18978242	-	PF1870	-	hypothetical protein
1921	 39.35	0	1726006..1727151	-	381	18978243	-	PF1871	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
1922	 42.05	0	1727156..1727419	-	87	18978244	-	PF1872	-	50S ribosomal protein L35Ae
1923	 38.71	0	1727511..1728179	+	222	18978245	-	PF1873	-	hypothetical protein
1924	 40.20	0	1728228..1729232	+	334	18978246	-	PF1874	-	glyceraldehyde-3-phosphate dehydrogenase
1925	 35.33	-1	1729289..1729588	+	99	18978247	-	PF1875	-	hypothetical protein
1926	 43.10	0	1729575..1730168	-	197	18978248	-	PF1876	-	hypothetical protein
1927	 40.66	0	1730235..1731149	+	304	18978249	-	PF1877	-	thiamine monophosphate kinase
1928	 34.67	-1	1731133..1731657	+	174	18978250	-	PF1878	-	methylated-DNA--protein-cysteine methyltransferase
1929	 41.79	0	1731645..1732661	+	338	18978251	-	PF1879	-	o-linked GlcNAc transferase
1930	 39.00	0	1732949..1733548	+	199	18978252	-	PF1880	-	hypothetical protein
1931	 45.39	+1	1733551..1733832	-	93	18978253	-	PF1881	-	chromatin protein
1932	 43.79	0	1733935..1736325	-	796	18978254	-	PF1882	-	cell division protein CDC48
1933	 43.65	0	1736497..1737000	-	167	18978255	-	PF1883	-	small heat shock protein
1934	 36.90	-1	1737300..1738223	+	307	33359579	-	PF1884	-	putative ABC transporter
1935	 40.11	0	1738264..1739340	+	358	18978257	-	PF1885	-	glycosyl transferase
1936	 40.68	0	1739367..1740251	+	294	18978258	-	PF1886	-	sugar kinase
1937	 39.29	0	1740245..1741066	-	273	18978259	-	PF1887	-	hypothetical protein
1938	 39.45	0	1741053..1741820	-	255	18978260	-	PF1888	-	hypothetical protein
1939	 41.69	0	1741853..1742809	-	318	18978261	-	PF1889	-	daunorubicin resistance ATP-binding protein drrA
1940	 35.08	-1	1742875..1743675	-	266	33359580	-	PF1890	-	hypothetical protein
1941	 36.57	-1	1743809..1744333	-	174	18978263	-	PF1891	-	hypothetical protein
1942	 40.15	0	1744333..1745550	-	405	18978264	-	PF1892	-	hypothetical protein
1943	 38.21	0	1745653..1745898	+	81	18978265	-	PF1893	-	AsnC family transcriptional regulator
1944	 39.60	0	1745899..1746201	-	100	18978266	-	PF1894	-	signal recognition particle protein Srp19
1945	 36.10	-1	1746259..1746873	+	204	18978267	-	PF1895	-	biotin synthetase
1946	 39.11	0	1746870..1747631	+	253	18978268	-	PF1896	-	l-isoaspartyl protein carboxyl methyltransferase
1947	 35.42	-1	1747855..1748046	-	63	33359581	-	PF1896.1n	-	hypothetical protein
1948	 35.56	-1	1748036..1748215	+	59	18978269	-	PF1897	-	hypothetical protein
1949	 41.05	0	1748174..1748704	-	176	18978270	-	PF1898	-	hypothetical protein
1950	 39.65	0	1748733..1749524	+	263	18978271	-	PF1899	-	putative 2-deoxy-d-gluconate 3-dehydrogenase
1951	 37.91	0	1749516..1750346	-	276	18978272	-	PF1900	-	hypothetical protein
1952	 41.29	0	1750051..1751973	+	640	18978273	-	PF1901	-	oxygen-independent coproporphyrinogen III oxidase
1953	 39.51	0	1751962..1753305	-	447	18978274	-	PF1902	-	DNA repair helicase putative
1954	 38.03	0	1753356..1754483	+	375	18978275	-	PF1903	-	translation initiation factor IF-2
1955	 41.71	0	1754581..1755750	+	389	18978276	-	PF1904	-	nicotinate phosphoribosyltransferase
1956	 39.38	0	1755914..1757236	+	440	18978277	-	PF1905	-	putative protease
1957	 34.35	-1	1757248..1758627	+	459	18978278	-	PF1906	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
1958	 36.57	-1	1758806..1759330	+	174	18978279	-	PF1907	-	hypothetical protein
1959	 33.92	-1	1759342..1760193	+	283	18978280	-	PF1908	-	hypothetical protein
1960	 48.53	+2	1760272..1760475	-	67	18978281	-	PF1909	-	ferredoxin
1961	 43.89	0	1760551..1761981	-	476	18978282	-	PF1910	-	putative oxidoreductase
1962	 42.76	0	1761982..1762851	-	289	18978283	-	PF1911	-	ferredoxin--NADP(+) reductase subunit alpha
1963	 40.45	0	1762991..1764268	+	425	18978284	-	PF1912	-	hypothetical protein
1964	 38.82	0	1764306..1764779	+	157	18978285	-	PF1913	-	hypothetical protein
1965	 39.84	0	1764755..1765399	+	214	18978286	-	PF1914	-	ribonuclease P protein component 3
1966	 39.73	0	1765438..1766625	+	395	33359582	-	PF1915	-	hypothetical protein
1967	 40.67	0	1766613..1767770	-	385	18978288	-	PF1916	-	hypothetical protein
1968	 41.93	0	1767878..1768924	+	348	18978289	-	PF1917	-	putative dehydrogenase
1969	 41.88	0	1769133..1770209	+	358	18978290	-	PF1918	-	hypothetical protein
1970	 42.46	0	1770216..1771223	+	335	18978291	-	PF1919	-	putative dehydrogenase
1971	 44.83	+1	1771227..1771913	-	228	18978292	-	PF1920	-	triosephosphate isomerase
1972	 39.02	0	1771951..1772565	-	204	18978293	-	PF1921	-	phosphoserine phosphatase
1973	 39.44	0	1772562..1773380	-	272	18978294	pcm	PF1922	-	protein-L-isoaspartate O-methyltransferase
1974	 37.71	0	1773331..1774107	+	258	18978295	-	PF1923	-	hypothetical protein
1975	 43.55	0	1774163..1775248	+	361	18978296	-	PF1924	-	d-aminopeptidase
1976	 41.78	0	1775245..1776321	+	358	18978297	-	PF1925	-	hypothetical protein
1977	 43.81	0	1776415..1777464	-	349	18978298	radA	PF1926	-	DNA repair and recombination protein RadA
1978	 43.32	0	1777604..1778224	-	206	18978299	-	PF1927	-	hypothetical protein
1979	 39.51	0	1778285..1779061	+	258	18978300	-	PF1928	-	ATP-binding protein phnp
1980	 39.97	0	1779108..1779800	-	230	18978301	-	PF1929	-	hypothetical protein
1981	 42.14	0	1780133..1780552	+	139	18978302	-	PF1930	-	S-adenosylmethionine decarboxylase proenzyme
1982	 41.80	0	1780734..1781477	+	247	18978303	-	PF1931	-	hypothetical protein
1983	 39.14	0	1781493..1782302	+	269	18978304	-	PF1932	-	hypothetical protein
1984	 44.92	+1	1782299..1783411	-	370	18978305	-	PF1933	-	putative sugar transport ATP-hydrolyzing
1985	 46.67	+1	1783451..1783870	-	139	18978306	-	PF1934	-	hypothetical protein
1986	 43.34	0	1783837..1786794	-	985	18978307	-	PF1935	-	amylopullulanase
1987	 40.79	0	1786805..1788052	-	415	18978308	-	PF1936	-	putative malg-like sugar transport inner membrane protein
1988	 41.36	0	1788049..1788945	-	298	18978309	-	PF1937	-	putative malf-like sugar transport inner membrane protein
1989	 43.91	0	1788984..1790288	-	434	18978310	-	PF1938	-	putative malE-like sugar binding protein
1990	 37.46	0	1790387..1792324	-	645	18978311	-	PF1939	-	neopullulanase (alpha-amylase II)
1991	 41.01	0	1792371..1792748	-	125	33359583	-	PF1939.1n	-	hypothetical protein
1992	 35.73	-1	1792853..1793353	-	166	18978312	-	PF1940	-	hypothetical protein
1993	 45.13	+1	1793343..1793537	-	64	33359584	-	PF1940.1n	-	hypothetical protein
1994	 38.91	0	1793572..1795095	-	507	18978313	-	PF1941	-	dihydropteroate synthase
1995	 40.90	0	1795097..1796563	-	488	18978314	-	PF1942	-	hypothetical protein
1996	 36.68	-1	1796669..1797235	+	188	18978315	-	PF1943	-	hypothetical protein
1997	 37.47	0	1797159..1798391	+	410	18978316	-	PF1944	-	hypothetical protein
1998	 38.54	0	1798437..1799051	-	204	18978317	-	PF1945	-	n-type ATP pyrophosphatase superfamily protein
1999	 41.84	0	1799153..1799587	+	144	18978318	-	PF1946	-	methylmalonyl-CoAmutase, subunit alpha
2000	 40.06	0	1799630..1800595	+	321	18978319	-	PF1947	-	hypothetical protein
2001	 41.79	0	1800588..1800989	+	133	18978320	-	PF1948	-	hypothetical protein
2002	 33.80	-1	1800990..1801202	-	70	18978321	-	PF1949	-	hypothetical protein
2003	 45.06	+1	1801271..1801918	-	215	18978322	-	PF1950	-	xanthine-guanine phosphoribosyltransferase
2004	 41.13	0	1801964..1802848	-	294	18978323	-	PF1951	-	asparagine synthetase A
2005	 39.77	0	1802989..1804914	-	641	18978324	-	PF1952	-	hypothetical protein
2006	 40.19	0	1804967..1805506	+	179	18978325	-	PF1953	-	inosine-5'-monophosphate dehydrogenase related protein II
2007	 39.18	0	1805557..1806291	-	244	18978326	-	PF1954	-	hypothetical protein
2008	 41.20	0	1806301..1806516	-	71	18978327	-	PF1955	-	hypothetical protein
2009	 45.15	+1	1806615..1807460	+	281	18978328	-	PF1956	-	fructose-bisphosphate aldolase
2010	 42.75	0	1807417..1808382	+	321	18978329	-	PF1957	-	agmatinase
2011	 43.25	0	1808379..1808852	+	157	18978330	-	PF1958	-	hypothetical protein
2012	 45.47	+1	1808901..1810136	+	411	18978331	-	PF1959	-	cofactor-independent phosphoglycerate mutase
40.88	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.