IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1831	 39.41	0	1655335..1656009	+	224	18978153	rnhB	PF1781	-	ribonuclease HII
1832	 38.39	0	1655977..1657518	-	513	18978154	-	PF1782	-	hypothetical protein
1833	 42.76	0	1657500..1658687	-	395	18978155	-	PF1783	-	molybdenum cofactor biosynthesis protein
1834	 39.12	0	1658728..1660092	-	454	18978156	-	PF1784	-	ADP-specific phosphofructokinase
1835	 41.06	0	1660205..1661227	+	340	18978157	-	PF1785	-	H/ACA RNA-protein complex component Cbf5p
1836	 40.54	0	1661230..1661562	-	110	18978158	-	PF1786	-	hypothetical protein
1837	 40.34	0	1661667..1662365	-	232	18978159	-	PF1787	-	acetyl-CoA synthetase
1838	 39.39	0	1662412..1663335	-	307	18978160	-	PF1788	-	NDP-sugar dehydratase or epimerase
1839	 39.12	0	1663392..1664048	+	218	18978161	-	PF1789	-	hydrolase related to 2-haloalkanoic acid dehalogenase
1840	 38.59	0	1664132..1664740	+	202	18978162	-	PF1790	-	ArsR family transcriptional regulator
1841	 35.87	-1	1664754..1665068	+	104	18978163	-	PF1791	-	H/ACA RNA-protein complex component Gar1
1842	 35.76	-1	1665087..1665581	+	164	18978164	-	PF1792	-	5'-cyclic-nucleotide phosphodiesterase
1843	 37.46	0	1665560..1666189	-	209	18978165	-	PF1793	-	hypothetical protein
1844	 36.88	-1	1666520..1667083	+	187	18978166	-	PF1794	-	inosine-5'-monophosphate dehydrogenase related protein I
1845	 42.67	0	1667150..1668574	+	474	18978167	-	PF1795	-	sarcosine oxidase subunit alpha
1846	 41.87	0	1668574..1669077	+	167	18978168	-	PF1796	-	putative polyferredoxin
1847	 40.23	0	1669074..1669334	+	86	18978169	-	PF1797	-	d-nopaline dehydrogenase
1848	 42.48	0	1669331..1670467	+	378	18978170	-	PF1798	-	sarcosine oxidase, subunit beta
1849	 36.93	-1	1670464..1670991	-	175	18978171	-	PF1799	-	hypothetical protein
1850	 41.46	0	1670984..1671574	-	196	18978172	-	PF1800	-	adenylate kinase
1851	 43.14	0	1671649..1673055	-	468	18978173	-	PF1801	-	preprotein translocase subunit SecY
1852	 44.82	+1	1673107..1673550	-	147	161484705	rpl15p	PF1802	-	50S ribosomal protein L15P
1853	 43.80	0	1673561..1674028	-	155	18978175	rpl30p	PF1803	-	50S ribosomal protein L30P
1854	 43.88	0	1674040..1674750	-	236	18978176	rps5p	PF1804	-	30S ribosomal protein S5P
1855	 44.77	+1	1674747..1675358	-	203	18978177	rpl18p	PF1805	-	50S ribosomal protein L18P
1856	 41.72	0	1675370..1675822	-	150	18978178	rpl19e	PF1806	-	50S ribosomal protein L19e
1857	 45.55	+1	1675834..1676226	-	130	18978179	rpl32e	PF1807	-	50S ribosomal protein L32e
1858	 40.90	0	1676237..1676791	-	184	18978180	rpl6p	PF1808	-	50S ribosomal protein L6P
1859	 43.26	0	1676811..1677203	-	130	18978181	rps8p	PF1809	-	30S ribosomal protein S8P
1860	 41.52	0	1677219..1677389	-	56	18978182	rps14P	PF1810	-	30S ribosomal protein S14P
1861	 45.63	+1	1677394..1677954	-	186	18978183	rpl5p	PF1811	-	50S ribosomal protein L5P
1862	 43.72	0	1677965..1678696	-	243	18978184	-	PF1812	-	30S ribosomal protein S4e
1863	 41.07	0	1678696..1679070	-	124	18978185	rpl24p	PF1813	-	50S ribosomal protein L24P
1864	 45.54	+1	1679072..1679497	-	141	18978186	rpl14p	PF1814	-	50S ribosomal protein L14P
1865	 44.44	0	1679503..1679844	-	113	18978187	rps17p	PF1815	-	30S ribosomal protein S17P
1866	 40.36	0	1679841..1680224	-	127	18978188	-	PF1816	-	ribonuclease P protein component 1
1867	 41.75	0	1680110..1680406	-	98	18978189	-	PF1817	-	translation initiation factor Sui1
1868	 42.01	0	1680419..1680637	-	72	18978190	rpmC	PF1818	-	50S ribosomal protein L29
1869	 43.29	0	1680624..1681256	-	210	18978191	rps3p	PF1819	-	30S ribosomal protein S3P
1870	 43.80	0	1681261..1681728	-	155	18978192	rpl22p	PF1820	-	50S ribosomal protein L22P
1871	 43.36	0	1681739..1682137	-	132	18978193	rps19p	PF1821	-	30S ribosomal protein S19P
1872	 45.14	+1	1682148..1682867	-	239	18978194	rpl2p	PF1822	-	50S ribosomal protein L2P
1873	 37.45	0	1682879..1683145	-	88	18978195	rplW	PF1823	-	50S ribosomal protein L23
1874	 43.23	0	1683145..1683912	-	255	18978196	rpl4lp	PF1824	-	50S ribosomal protein L4P
1875	 42.44	0	1683928..1685025	-	365	18978197	rpl3p	PF1825	-	50S ribosomal protein L3P
1876	 42.66	0	1685028..1685810	-	260	18978198	-	PF1826	-	hypothetical protein
1877	 37.86	0	1685959..1686798	-	279	18978199	-	PF1827	-	hypothetical protein
1878	 38.27	0	1686903..1687307	-	134	33359575	-	PF1828	-	hypothetical protein
1879	 37.93	0	1687383..1688621	-	412	18978201	-	PF1829	-	nucleotidyltransferase
1880	 31.84	-2	1688684..1689151	+	155	18978202	-	PF1830	-	putative regulatory protein
1881	 47.55	+1	1689365..1689568	+	67	18978203	-	PF1831	-	histone a1
1882	 38.81	0	1689655..1690458	+	267	18978204	-	PF1832	-	GTP cyclohydrolase
1883	 36.26	-1	1690436..1691050	-	204	18978205	-	PF1833	-	hypothetical protein
1884	 40.35	0	1691095..1691607	+	170	18978206	-	PF1834	-	hypothetical protein
1885	 40.59	0	1691604..1692209	+	201	18978207	-	PF1835	-	hypothetical protein
1886	 31.25	-2	1692206..1692493	+	95	18978208	-	PF1836	-	hypothetical protein
1887	 40.23	0	1692502..1693212	-	236	18978209	-	PF1837	-	hypothetical protein
1888	 41.84	0	1693216..1694637	-	473	18978210	-	PF1838	-	hypothetical protein
1889	 42.26	0	1694767..1696380	+	537	161484706	-	PF1839	-	CTP synthetase
1890	 34.48	-1	1696367..1696801	+	144	18978212	-	PF1840	-	hypothetical protein
1891	 37.37	0	1696784..1697155	-	123	18978213	-	PF1841	-	hypothetical protein
1892	 38.81	0	1697525..1698163	-	212	18978214	-	PF1842	-	hypothetical protein
1893	 38.05	0	1698153..1702028	-	1291	18978215	-	PF1843	-	chromosome segregation protein smc
1894	 38.22	0	1701742..1702089	+	115	33359576	-	PF1844	-	hypothetical protein
1895	 40.30	0	1702086..1702760	+	224	18978217	-	PF1845	-	murein hydrolase
1896	 36.07	-1	1702767..1703351	+	194	18978218	-	PF1846	-	hypothetical protein
1897	 42.01	0	1703344..1704669	-	441	18978219	-	PF1847	-	tbp-interacting protein tip49
1898	 43.52	0	1704745..1705971	-	408	18978220	-	PF1848	-	3-hydroxy-3-methylglutaryl-coenzyme A reductase
1899	 41.08	0	1705987..1706748	-	253	18978221	-	PF1849	-	cell division inhibitor minD
1900	 41.30	0	1706913..1708280	+	455	18978222	-	PF1850	-	damage-inducible protein DinF
1901	 39.01	0	1708277..1709227	-	316	18978223	-	PF1851	-	hypothetical protein
1902	 38.64	0	1709262..1710335	-	357	18978224	-	PF1852	-	putative glutamate synthase subunit beta
1903	 38.21	0	1710535..1711314	+	259	18978225	-	PF1853	-	glucose-1-dehydrogenase
1904	 38.43	0	1711295..1711765	-	156	18978226	moaC	PF1854	-	putative molybdenum cofactor biosynthesis protein C
1905	 38.75	0	1711817..1713091	+	424	18978227	-	PF1855	-	putative transcription-associated protein TFIIS
1906	 38.80	0	1713098..1714615	+	505	18978228	-	PF1856	-	trk system potassium uptake protein
1907	 39.42	0	1714815..1715471	+	218	18978229	-	PF1857	-	cobalt transport ATP-binding protein cbio
1908	 39.42	0	1715594..1716448	+	284	18978230	-	PF1858	-	cysteine synthase
1909	 38.54	0	1716363..1716938	-	191	33359577	-	PF1859	-	hypothetical protein
1910	 39.21	0	1716895..1717473	-	192	18978232	-	PF1860	-	archaemetzincin-like protein
1911	 42.84	0	1717470..1718510	-	346	18978233	-	PF1861	-	endo-1,4-beta-glucanase-like protein
1912	 36.73	-1	1718792..1719409	+	205	18978234	-	PF1862	-	DNA-binding protein
1913	 35.89	-1	1719412..1720233	+	273	18978235	ksgA	PF1863	-	dimethyladenosine transferase
1914	 44.59	0	1720274..1720975	-	233	18978236	-	PF1864	-	transposase
1915	 34.36	-1	1721054..1721833	+	259	18978237	-	PF1865	-	putative regulatory protein
1916	 43.37	0	1721830..1723035	-	401	18978238	-	PF1866	-	S-adenosylmethionine synthetase
1917	 40.16	0	1723182..1724060	+	292	33359578	-	PF1867	-	hypothetical protein
1918	 38.68	0	1724035..1724895	+	286	18978240	-	PF1868	-	integrase-recombinase protein
1919	 38.96	0	1724896..1725801	+	301	18978241	-	PF1869	-	hypothetical protein
1920	 35.65	-1	1725794..1726009	+	71	18978242	-	PF1870	-	hypothetical protein
1921	 39.35	0	1726006..1727151	-	381	18978243	-	PF1871	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
1922	 42.05	0	1727156..1727419	-	87	18978244	-	PF1872	-	50S ribosomal protein L35Ae
1923	 38.71	0	1727511..1728179	+	222	18978245	-	PF1873	-	hypothetical protein
1924	 40.20	0	1728228..1729232	+	334	18978246	-	PF1874	-	glyceraldehyde-3-phosphate dehydrogenase
1925	 35.33	-1	1729289..1729588	+	99	18978247	-	PF1875	-	hypothetical protein
1926	 43.10	0	1729575..1730168	-	197	18978248	-	PF1876	-	hypothetical protein
1927	 40.66	0	1730235..1731149	+	304	18978249	-	PF1877	-	thiamine monophosphate kinase
1928	 34.67	-1	1731133..1731657	+	174	18978250	-	PF1878	-	methylated-DNA--protein-cysteine methyltransferase
1929	 41.79	0	1731645..1732661	+	338	18978251	-	PF1879	-	o-linked GlcNAc transferase
1930	 39.00	0	1732949..1733548	+	199	18978252	-	PF1880	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.