IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1799	 42.41	0	1627288..1628301	+	337	18978122	-	PF1750	-	putative sugar-binding transport ATP-binding protein
1800	 42.74	0	1628290..1629363	-	357	18978123	-	PF1751	-	putative solute binding lipoprotein
1801	 44.26	0	1629292..1630206	+	304	18978124	-	PF1752	-	transposase
1802	 40.79	0	1630248..1631990	+	580	18978125	gltX	PF1753	-	glutamyl-tRNA synthetase
1803	 42.12	0	1632002..1632502	-	166	18978126	-	PF1754	-	fumarate hydratase
1804	 41.51	0	1632493..1633311	-	272	18978127	-	PF1755	-	fumarate hydratase
1805	 36.56	-1	1633325..1633510	-	61	33359573	-	PF1755.1n	-	hypothetical protein
1806	 42.61	0	1633559..1633903	+	114	18978128	-	PF1756	-	hypothetical protein
1807	 40.37	0	1633903..1634613	+	236	18978129	-	PF1757	-	hypothetical protein
1808	 40.83	0	1634603..1635562	-	319	18978130	-	PF1758	-	n-type ATP pyrophosphatase superfamily protein
1809	 37.34	0	1635746..1637191	+	481	18978131	-	PF1759	-	hypothetical protein
1810	 38.74	0	1637197..1638324	+	375	18978132	-	PF1760	-	hypothetical protein
1811	 38.73	0	1638428..1639594	+	388	18978133	-	PF1761	-	hypothetical protein
1812	 37.15	0	1639584..1640657	+	357	18978134	-	PF1762	-	hypothetical protein
1813	 42.10	0	1640658..1641821	-	387	18978135	-	PF1763	-	gtp1/obg family GTP-binding protein
1814	 44.54	0	1641930..1642607	+	225	18978136	-	PF1764	-	metal-dependent hydrolase
1815	 36.56	-1	1642596..1642874	-	92	18978137	-	PF1765	-	hypothetical protein
1816	 40.04	0	1642867..1643835	-	322	18978138	-	PF1766	-	signal recognition particle receptor
1817	 41.76	0	1644004..1644264	+	86	18978139	-	PF1767	-	2-keto acid:ferredoxin oxidoreductase subunit delta
1818	 43.32	0	1644267..1645457	+	396	18978140	-	PF1768	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
1819	 42.87	0	1645457..1646305	+	282	18978141	-	PF1769	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1820	 40.70	0	1646309..1646824	+	171	18978142	-	PF1770	-	2-oxoglutarate ferredoxin oxidoreductase subunit gamma
1821	 43.30	0	1646817..1647980	+	387	18978143	-	PF1771	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
1822	 43.14	0	1647977..1648822	+	281	18978144	-	PF1772	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1823	 40.70	0	1648819..1649361	+	180	18978145	-	PF1773	-	2-oxoglutarate ferredoxin oxidoreductase subunit gamma
1824	 40.66	0	1649441..1650532	+	363	18978146	-	PF1774	-	iron III ABC transporter, ATP-binding protein
1825	 38.60	0	1650498..1650953	-	151	18978147	-	PF1775	-	putative small multidrug export protein
1826	 39.41	0	1650968..1651543	-	191	18978148	-	PF1776	-	hypothetical protein
1827	 37.76	0	1651503..1652225	-	240	18978149	-	PF1777	-	hydrolase related to 2-haloalkanoic acid dehalogenase
1828	 44.16	0	1652268..1653551	-	427	18978150	glyA	PF1778	-	serine hydroxymethyltransferase
1829	 38.28	0	1653723..1654511	+	262	18978151	-	PF1779	-	putative ABC transporter
1830	 39.49	0	1654508..1655335	+	275	18978152	-	PF1780	-	putative ABC transporter
1831	 39.41	0	1655335..1656009	+	224	18978153	rnhB	PF1781	-	ribonuclease HII
1832	 38.39	0	1655977..1657518	-	513	18978154	-	PF1782	-	hypothetical protein
1833	 42.76	0	1657500..1658687	-	395	18978155	-	PF1783	-	molybdenum cofactor biosynthesis protein
1834	 39.12	0	1658728..1660092	-	454	18978156	-	PF1784	-	ADP-specific phosphofructokinase
1835	 41.06	0	1660205..1661227	+	340	18978157	-	PF1785	-	H/ACA RNA-protein complex component Cbf5p
1836	 40.54	0	1661230..1661562	-	110	18978158	-	PF1786	-	hypothetical protein
1837	 40.34	0	1661667..1662365	-	232	18978159	-	PF1787	-	acetyl-CoA synthetase
1838	 39.39	0	1662412..1663335	-	307	18978160	-	PF1788	-	NDP-sugar dehydratase or epimerase
1839	 39.12	0	1663392..1664048	+	218	18978161	-	PF1789	-	hydrolase related to 2-haloalkanoic acid dehalogenase
1840	 38.59	0	1664132..1664740	+	202	18978162	-	PF1790	-	ArsR family transcriptional regulator
1841	 35.87	-1	1664754..1665068	+	104	18978163	-	PF1791	-	H/ACA RNA-protein complex component Gar1
1842	 35.76	-1	1665087..1665581	+	164	18978164	-	PF1792	-	5'-cyclic-nucleotide phosphodiesterase
1843	 37.46	0	1665560..1666189	-	209	18978165	-	PF1793	-	hypothetical protein
1844	 36.88	-1	1666520..1667083	+	187	18978166	-	PF1794	-	inosine-5'-monophosphate dehydrogenase related protein I
1845	 42.67	0	1667150..1668574	+	474	18978167	-	PF1795	-	sarcosine oxidase subunit alpha
1846	 41.87	0	1668574..1669077	+	167	18978168	-	PF1796	-	putative polyferredoxin
1847	 40.23	0	1669074..1669334	+	86	18978169	-	PF1797	-	d-nopaline dehydrogenase
1848	 42.48	0	1669331..1670467	+	378	18978170	-	PF1798	-	sarcosine oxidase, subunit beta
1849	 36.93	-1	1670464..1670991	-	175	18978171	-	PF1799	-	hypothetical protein
1850	 41.46	0	1670984..1671574	-	196	18978172	-	PF1800	-	adenylate kinase
1851	 43.14	0	1671649..1673055	-	468	18978173	-	PF1801	-	preprotein translocase subunit SecY
1852	 44.82	+1	1673107..1673550	-	147	161484705	rpl15p	PF1802	-	50S ribosomal protein L15P
1853	 43.80	0	1673561..1674028	-	155	18978175	rpl30p	PF1803	-	50S ribosomal protein L30P
1854	 43.88	0	1674040..1674750	-	236	18978176	rps5p	PF1804	-	30S ribosomal protein S5P
1855	 44.77	+1	1674747..1675358	-	203	18978177	rpl18p	PF1805	-	50S ribosomal protein L18P
1856	 41.72	0	1675370..1675822	-	150	18978178	rpl19e	PF1806	-	50S ribosomal protein L19e
1857	 45.55	+1	1675834..1676226	-	130	18978179	rpl32e	PF1807	-	50S ribosomal protein L32e
1858	 40.90	0	1676237..1676791	-	184	18978180	rpl6p	PF1808	-	50S ribosomal protein L6P
1859	 43.26	0	1676811..1677203	-	130	18978181	rps8p	PF1809	-	30S ribosomal protein S8P
1860	 41.52	0	1677219..1677389	-	56	18978182	rps14P	PF1810	-	30S ribosomal protein S14P
1861	 45.63	+1	1677394..1677954	-	186	18978183	rpl5p	PF1811	-	50S ribosomal protein L5P
1862	 43.72	0	1677965..1678696	-	243	18978184	-	PF1812	-	30S ribosomal protein S4e
1863	 41.07	0	1678696..1679070	-	124	18978185	rpl24p	PF1813	-	50S ribosomal protein L24P
1864	 45.54	+1	1679072..1679497	-	141	18978186	rpl14p	PF1814	-	50S ribosomal protein L14P
1865	 44.44	0	1679503..1679844	-	113	18978187	rps17p	PF1815	-	30S ribosomal protein S17P
1866	 40.36	0	1679841..1680224	-	127	18978188	-	PF1816	-	ribonuclease P protein component 1
1867	 41.75	0	1680110..1680406	-	98	18978189	-	PF1817	-	translation initiation factor Sui1
1868	 42.01	0	1680419..1680637	-	72	18978190	rpmC	PF1818	-	50S ribosomal protein L29
1869	 43.29	0	1680624..1681256	-	210	18978191	rps3p	PF1819	-	30S ribosomal protein S3P
1870	 43.80	0	1681261..1681728	-	155	18978192	rpl22p	PF1820	-	50S ribosomal protein L22P
1871	 43.36	0	1681739..1682137	-	132	18978193	rps19p	PF1821	-	30S ribosomal protein S19P
1872	 45.14	+1	1682148..1682867	-	239	18978194	rpl2p	PF1822	-	50S ribosomal protein L2P
1873	 37.45	0	1682879..1683145	-	88	18978195	rplW	PF1823	-	50S ribosomal protein L23
1874	 43.23	0	1683145..1683912	-	255	18978196	rpl4lp	PF1824	-	50S ribosomal protein L4P
1875	 42.44	0	1683928..1685025	-	365	18978197	rpl3p	PF1825	-	50S ribosomal protein L3P
1876	 42.66	0	1685028..1685810	-	260	18978198	-	PF1826	-	hypothetical protein
1877	 37.86	0	1685959..1686798	-	279	18978199	-	PF1827	-	hypothetical protein
1878	 38.27	0	1686903..1687307	-	134	33359575	-	PF1828	-	hypothetical protein
1879	 37.93	0	1687383..1688621	-	412	18978201	-	PF1829	-	nucleotidyltransferase
1880	 31.84	-2	1688684..1689151	+	155	18978202	-	PF1830	-	putative regulatory protein
1881	 47.55	+1	1689365..1689568	+	67	18978203	-	PF1831	-	histone a1
1882	 38.81	0	1689655..1690458	+	267	18978204	-	PF1832	-	GTP cyclohydrolase
1883	 36.26	-1	1690436..1691050	-	204	18978205	-	PF1833	-	hypothetical protein
1884	 40.35	0	1691095..1691607	+	170	18978206	-	PF1834	-	hypothetical protein
1885	 40.59	0	1691604..1692209	+	201	18978207	-	PF1835	-	hypothetical protein
1886	 31.25	-2	1692206..1692493	+	95	18978208	-	PF1836	-	hypothetical protein
1887	 40.23	0	1692502..1693212	-	236	18978209	-	PF1837	-	hypothetical protein
1888	 41.84	0	1693216..1694637	-	473	18978210	-	PF1838	-	hypothetical protein
1889	 42.26	0	1694767..1696380	+	537	161484706	-	PF1839	-	CTP synthetase
1890	 34.48	-1	1696367..1696801	+	144	18978212	-	PF1840	-	hypothetical protein
1891	 37.37	0	1696784..1697155	-	123	18978213	-	PF1841	-	hypothetical protein
1892	 38.81	0	1697525..1698163	-	212	18978214	-	PF1842	-	hypothetical protein
1893	 38.05	0	1698153..1702028	-	1291	18978215	-	PF1843	-	chromosome segregation protein smc
1894	 38.22	0	1701742..1702089	+	115	33359576	-	PF1844	-	hypothetical protein
1895	 40.30	0	1702086..1702760	+	224	18978217	-	PF1845	-	murein hydrolase
1896	 36.07	-1	1702767..1703351	+	194	18978218	-	PF1846	-	hypothetical protein
1897	 42.01	0	1703344..1704669	-	441	18978219	-	PF1847	-	tbp-interacting protein tip49
1898	 43.52	0	1704745..1705971	-	408	18978220	-	PF1848	-	3-hydroxy-3-methylglutaryl-coenzyme A reductase
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.