IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
132	 64.85	+2	138821..139534	-	237	33359451	-	PF0131.1n	-	hypothetical protein
133	 64.66	+2	140179..140877	-	232	33359452	-	PF0131.2n	-	hypothetical protein
134	 61.58	+2	141213..141389	+	58	33359453	-	PF0131.3n	-	hypothetical protein
135	 44.01	0	141849..143318	+	489	33359454	-	PF0132	-	hypothetical protein
136	 41.84	0	143315..143890	+	191	33359455	-	PF0133	-	hypothetical protein
137	 41.71	0	143884..144492	-	202	18976506	-	PF0134	-	hypothetical protein
138	 42.56	0	144607..146178	+	523	18976507	lysK	PF0135	-	lysyl-tRNA synthetase
139	 39.98	0	146184..147086	+	300	18976508	-	PF0136	-	hypothetical protein
140	 36.97	-1	147057..147743	-	228	18976509	-	PF0137	-	putative methyltransferase
141	 36.63	-1	147810..148781	+	323	18976510	-	PF0138	-	hypothetical protein
142	 41.67	0	148852..149451	+	199	18976511	-	PF0139	-	indolepyruvate oxidoreductase subunit B
143	 39.43	0	149426..150589	-	387	18976512	-	PF0140	-	putative sugar transporter protein
144	 35.95	-1	150678..151595	+	305	18976513	-	PF0141	-	hypothetical protein
145	 43.65	0	151648..152568	+	306	18976514	-	PF0142	-	asparaginase
146	 40.72	0	152568..153731	+	387	18976515	-	PF0143	-	quinolone resistance protein norA - like protein
147	 40.75	0	153721..154650	+	309	18976516	-	PF0144	-	hypothetical protein
148	 39.84	0	154652..155266	+	204	18976517	-	PF0145	-	hypothetical protein
149	 39.59	0	155263..155853	-	196	18976518	-	PF0146	-	potassium channel, putative
150	 38.35	0	155840..156457	-	205	18976519	-	PF0147	-	potassium channel related protein
151	 38.74	0	156649..157221	-	190	18976520	-	PF0148	-	hypothetical protein
152	 41.67	0	157236..158027	-	263	18976521	-	PF0149	-	short chain dehydrogenase
153	 36.91	-1	158092..158706	+	204	18976522	-	PF0150	-	hypothetical protein
154	 38.26	0	158703..159494	+	263	18976523	-	PF0151	-	hypothetical protein
155	 40.91	0	159491..160150	-	219	18976524	-	PF0152	-	hypothetical protein
156	 36.88	-1	160186..160890	-	234	18976525	-	PF0153	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
157	 40.59	0	160961..162310	+	449	18976526	-	PF0154	-	amidophosphoribosyltransferase
158	 43.46	0	162480..163793	-	437	18976527	asnC	PF0155	-	asparaginyl-tRNA synthetase
159	 40.77	0	164091..166994	-	967	18976528	-	PF0156	-	oligosaccharyl transferase stt3 subunit related protein
160	 40.85	0	167010..168806	-	598	18976529	-	PF0157	-	D-fructose-6-phosphate amidotransferase
161	 39.24	0	168884..169933	-	349	18976530	-	PF0158	-	hypothetical protein
162	 43.82	0	169930..170520	-	196	18976531	-	PF0159	-	multicatalytic endopeptidase complex beta subunit
163	 39.52	0	170595..171968	+	457	18976532	-	PF0160	-	TLDD - like protein
164	 38.24	0	171965..173227	+	420	18976533	-	PF0161	-	hypothetical protein
165	 35.45	-1	173278..173844	+	188	18976534	-	PF0162	-	hypothetical protein
166	 39.00	0	173847..174623	-	258	18976535	-	PF0163	-	hypothetical protein
167	 42.37	0	174556..175761	+	401	18976536	-	PF0164	-	nifS protein
168	 41.13	0	175745..176437	-	230	18976537	-	PF0165	-	hydrolase related to 2-haloalkanoic acid dehalogenase
169	 42.58	0	176434..176952	-	172	18976538	-	PF0166	-	oxidoreductase
170	 41.44	0	176949..178058	-	369	18976539	-	PF0167	-	metalloprotease
171	 39.68	0	178150..178653	+	167	18976540	-	PF0168	-	hypothetical protein
172	 40.31	0	178650..179810	+	386	18976541	-	PF0169	-	nol1-nop2-sun family nucleolar protein III
173	 38.44	0	179807..180805	+	332	18976542	-	PF0170	-	hypothetical protein
174	 37.60	0	180802..181317	-	171	18976543	-	PF0171	-	hypothetical protein
175	 43.49	0	181525..182499	-	324	18976544	-	PF0172	-	O-sialoglycoprotein endopeptidase
176	 39.51	0	182599..183489	+	296	18976545	-	PF0173	-	preprotein translocase subunit SecF
177	 39.39	0	183486..185003	+	505	18976546	secD	PF0174	-	preprotein translocase subunit SecD
178	 38.67	0	185009..185701	+	230	18976547	-	PF0175	-	trk system potassium uptake - like protein
179	 37.00	-1	185779..186105	+	108	33359456	-	PF0176	-	V-type ATP synthase subunit H
180	 39.16	0	186107..188098	+	663	18976549	-	PF0177	-	V-type ATP synthase subunit I
181	 44.17	0	188100..188579	+	159	18976550	-	PF0178	-	V-type ATP synthase subunit K
182	 37.91	0	188599..189210	+	203	33359457	-	PF0179	-	V-type ATP synthase subunit E
183	 36.57	-1	189217..190329	+	370	18976552	-	PF0180	-	V-type ATP synthase subunit C
184	 40.38	0	190326..190637	+	103	18976553	-	PF0181	-	V-type ATP synthase subunit F
185	 42.44	0	190644..193685	+	1013	18976554	-	PF0182	-	V-type ATP synthase subunit A
186	 45.28	+1	193691..195079	+	462	18976555	-	PF0183	-	V-type ATP synthase subunit B
187	 38.29	0	195110..195754	+	214	18976556	-	PF0184	-	V-type ATP synthase subunit D
188	 37.04	-1	195786..197000	+	404	18976557	-	PF0185	-	partial alanyl-tRNA synthetase matches COOH terminus half
189	 39.25	0	196975..197802	-	275	18976558	-	PF0186	-	n-type ATP pyrophosphatase superfamily protein
190	 40.37	0	197868..198776	-	302	18976559	-	PF0187	-	putative cofactor synthesis protein
191	 38.98	0	198787..199530	-	247	18976560	-	PF0188	-	dihydroorotate dehydrogenase electron transfer subunit
192	 37.93	0	199478..200827	-	449	18976561	-	PF0189	-	dihydroorotase
193	 44.50	0	201035..203524	+	829	18976562	-	PF0190	-	hypothetical protein
194	 40.86	0	203712..204761	+	349	18976563	-	PF0191	-	oligopeptide transport system permease protein
195	 43.65	0	204772..206196	+	474	18976564	-	PF0192	-	oligopeptide transporter permease appc
196	 45.73	+1	206207..207166	+	319	18976565	-	PF0193	-	putative ABC transport ATP binding protein
197	 44.74	+1	207177..208184	+	335	18976566	-	PF0194	-	dipeptide ABC transporter, ATP-binding protein
198	 39.23	0	208160..208702	+	180	18976567	-	PF0195	-	hypothetical protein
199	 44.21	0	208695..209264	+	189	18976568	-	PF0196	-	glucose-6-phosphate isomerase
200	 45.42	+1	209332..209571	+	79	18976569	-	PF0197	-	phosphoribosylformylglycinamidine synthase subunit PurS
201	 42.25	0	209565..210248	+	227	18976570	-	PF0198	-	phosphoribosylformylglycinamidine synthase subunit I
202	 43.45	0	210357..212471	+	704	18976571	-	PF0199	-	phosphoribosylformylglycinamidine synthase II
203	 42.20	0	212635..214077	-	480	18976572	-	PF0200	-	hypothetical protein
204	 42.07	0	214120..216615	-	831	18976573	-	PF0201	-	aconitate hydratase
205	 41.73	0	216620..217822	-	400	18976574	-	PF0202	-	isocitrate dehydrogenase
206	 38.80	0	217828..218961	-	377	18976575	-	PF0203	-	citrate synthase
207	 38.56	0	219318..220427	+	369	18976576	-	PF0204	-	hypothetical protein
208	 41.42	0	220424..221932	+	502	18976577	-	PF0205	-	glutamate synthase subunit alpha
209	 38.77	0	221929..222756	+	275	18976578	-	PF0206	-	hypothetical protein
210	 41.69	0	222845..224077	+	410	18976579	-	PF0207	-	argininosuccinate synthase
211	 40.00	0	224091..225470	+	459	18976580	-	PF0208	-	argininosuccinate lyase
212	 39.42	0	225439..226260	+	273	18976581	-	PF0209	-	ribosomal protein s6 modification protein
213	 41.70	0	226257..227870	-	537	18976582	-	PF0210	-	putative oxidative cyclase
214	 37.89	0	228005..228619	+	204	18976583	-	PF0211	-	hypothetical protein
215	 39.30	0	228606..230933	-	775	18976584	-	PF0212	-	DNA-directed DNA polymerase
216	 42.19	0	231034..231846	+	270	18976585	-	PF0213	-	hypothetical protein
217	 39.68	0	231843..232583	-	246	18976586	-	PF0214	-	n-type ATP pyrophosphatase
218	 45.55	+1	232621..233913	-	430	18976587	eno	PF0215	-	phosphopyruvate hydratase
219	 35.95	-1	233948..234520	-	190	18976588	maf	PF0216	-	Maf-like protein
220	 43.86	0	234645..234929	+	94	161484704	rpl44e	PF0217	-	50S ribosomal protein L44e
221	 40.10	0	234934..235125	+	63	18976590	rps27e	PF0218	-	30S ribosomal protein S27e
222	 34.43	-1	235100..235555	-	151	18976591	-	PF0219	-	putative 6-pyruvoyl tetrahydrobiopterin synthase
223	 41.23	0	235489..236793	+	434	18976592	-	PF0220	-	hexulose-6-phosphate synthase (d-arabino 3-hexulose 6-phosphate formaldehyde lyase)
224	 36.67	-1	236943..237632	+	229	18976593	-	PF0221	-	hypothetical protein
225	 38.79	0	237626..238285	+	219	18976594	-	PF0222	-	hydrolase related to 2-haloalkanoic acid dehalogenase
226	 34.43	-1	238269..238451	+	60	33359459	-	PF0222.1n	-	hypothetical protein
227	 39.04	0	238448..239236	+	262	18976595	-	PF0223	-	hypothetical protein
228	 41.46	0	239229..239843	-	204	18976596	-	PF0224	-	hypothetical protein
229	 38.76	0	239785..240171	+	128	18976597	-	PF0225	-	N-acetyltransferase
230	 42.12	0	240105..240377	+	90	18976598	-	PF0226	-	hypothetical protein
231	 30.23	-2	240484..240612	-	42	33359460	-	PF0226.1n	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.