IslandPathversion 1.0

IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.88 STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1738	 43.73	0	1570563..1571351	+	262	18978062	-	PF1690	-	3-deoxy-7-phosphoheptulonate synthase
1739	 37.90	0	1571339..1572346	+	335	18978063	aroB	PF1691	-	3-dehydroquinate synthase
1740	 37.61	0	1572339..1572992	+	217	18978064	aroD	PF1692	-	3-dehydroquinate dehydratase
1741	 40.81	0	1572989..1573804	+	271	18978065	aroE	PF1693	-	shikimate 5-dehydrogenase
1742	 39.90	0	1573779..1574600	+	273	18978066	-	PF1694	-	shikimate kinase
1743	 43.02	0	1574650..1575846	+	398	18978067	-	PF1695	-	lipoprotein
1744	 38.51	0	1575891..1577396	+	501	18978068	-	PF1696	-	putative ABC sugar transporter
1745	 41.11	0	1577380..1578369	+	329	18978069	-	PF1697	-	putative ribose/galactose ABC transporter
1746	 42.46	0	1578362..1579270	+	302	18978070	-	PF1698	-	putative ribose ABC transporter
1747	 40.67	0	1579245..1580567	+	440	18978071	-	PF1699	-	3-phosphoshikimate 1-carboxyvinyltransferase
1748	 40.75	0	1580641..1581651	+	336	18978072	-	PF1700	-	chorismate synthase
1749	 32.90	-2	1581718..1581948	+	76	18978073	-	PF1701	-	chorismate mutase
1750	 39.11	0	1581932..1582969	+	345	18978074	-	PF1702	-	aspartate aminotransferase
1751	 39.60	0	1582954..1583400	+	148	18978075	-	PF1703	-	prephenate dehydrogenase
1752	 34.88	-1	1583405..1583728	+	107	18978076	-	PF1704	-	hypothetical protein
1753	 41.90	0	1583717..1584463	-	248	18978077	trpA	PF1705	-	tryptophan synthase subunit alpha
1754	 42.42	0	1584456..1585622	-	388	18978078	-	PF1706	-	tryptophan synthase subunit beta
1755	 39.87	0	1585609..1586235	-	208	18978079	-	PF1707	-	N-(5'-phosphoribosyl)anthranilate isomerase
1756	 41.62	0	1586235..1586801	-	188	18978080	-	PF1708	-	anthranilate synthase component II
1757	 39.57	0	1586803..1588101	-	432	18978081	-	PF1709	-	anthranilate synthase component I
1758	 39.49	0	1588083..1589057	-	324	18978082	-	PF1710	-	anthranilate phosphoribosyltransferase
1759	 39.30	0	1589057..1589743	-	228	18978083	trpC	PF1711	-	indole-3-glycerol-phosphate synthase
1760	 36.86	-1	1589900..1590580	+	226	18978084	-	PF1712	-	hypothetical protein
1761	 39.34	0	1590675..1591790	+	371	18978085	-	PF1713	-	carbamoyl phosphate synthase small subunit
1762	 40.68	0	1591787..1594957	+	1056	18978086	carB	PF1714	-	carbamoyl phosphate synthase large subunit
1763	 39.31	0	1594946..1595731	-	261	18978087	-	PF1715	-	pyrroline-5-carboxylate reductase
1764	 36.93	-1	1595798..1596214	-	138	18978088	-	PF1716	-	hypothetical protein
1765	 43.61	0	1596220..1597455	-	411	18978089	-	PF1717	-	translation initiation factor IF-2 subunit gamma
1766	 42.77	0	1597514..1598530	-	338	18978090	-	PF1718	-	tRNA-modifying enzyme
1767	 44.51	0	1598702..1599202	+	166	18978091	-	PF1719	-	intracellular protease
1768	 38.55	0	1599272..1600000	+	242	18978092	-	PF1720	-	hypothetical protein
1769	 36.73	-1	1599984..1600895	+	303	18978093	-	PF1721	-	hypothetical protein
1770	 45.10	+1	1601129..1601332	+	67	18978094	-	PF1722	-	histone a2
1771	 39.91	0	1601412..1602689	+	425	18978095	-	PF1723	-	hypothetical protein
1772	 43.94	0	1602755..1603150	+	131	18978096	-	PF1724	-	hypothetical protein
1773	 38.91	0	1603150..1604493	+	447	18978097	-	PF1725	-	DNA primase
1774	 37.66	0	1604557..1605318	-	253	18978098	-	PF1726	-	hypothetical protein
1775	 38.51	0	1605319..1605840	-	173	18978099	-	PF1727	-	hypothetical protein
1776	 37.57	0	1605924..1607009	+	361	18978100	-	PF1728	-	NDP-sugar synthase
1777	 42.16	0	1607011..1607724	+	237	33359571	-	PF1729	-	phospho-sugar mutase
1778	 39.34	0	1607740..1608372	+	210	18978102	tdk	PF1730	-	thymidylate kinase
1779	 39.71	0	1608359..1609690	+	443	18978103	-	PF1731	-	signal recognition particle protein Srp54
1780	 37.61	0	1609690..1609923	+	77	18978104	-	PF1732	-	AsnC family transcriptional regulator
1781	 34.42	-1	1609933..1610484	+	183	18978105	-	PF1733	-	hypothetical protein
1782	 34.23	-1	1610417..1610863	+	148	18978106	-	PF1734	-	AsnC family transcriptional regulator
1783	 39.08	0	1610860..1611573	-	237	18978107	-	PF1735	-	adenine phosphoribosyltransferase
1784	 38.24	0	1611840..1612247	-	135	33359572	-	PF1735.2n	-	hypothetical protein
1785	 44.53	0	1612383..1613132	+	249	18978108	-	PF1736	-	transposase
1786	 39.31	0	1613202..1613519	+	105	18978109	-	PF1737	-	hypothetical protein
1787	 42.39	0	1613503..1614441	-	312	18978110	-	PF1738	-	sugar kinase
1788	 41.54	0	1614675..1616027	+	450	18978111	-	PF1739	-	trehalose/maltose binding protein
1789	 37.47	0	1616069..1616962	+	297	18978112	-	PF1740	-	trehalose/maltose transport inner membrane protein
1790	 38.47	0	1616959..1617795	+	278	18978113	-	PF1741	-	trehalose/maltose transport inner membrane protein
1791	 40.84	0	1617800..1619038	+	412	18978114	-	PF1742	-	putative trehalose synthase
1792	 38.45	0	1619071..1620087	+	338	18978115	-	PF1743	-	hypothetical protein
1793	 48.35	+1	1620093..1621211	+	372	18978116	-	PF1744	-	trehalose/maltose transport ATP-hydrolyzing
1794	 43.51	0	1621258..1622760	+	500	18978117	-	PF1745	-	hypothetical protein
1795	 41.95	0	1622785..1624698	+	637	18978118	-	PF1746	-	hypothetical protein
1796	 40.00	0	1624649..1625638	+	329	18978119	-	PF1747	-	hypothetical protein
1797	 42.21	0	1625662..1626630	+	322	18978120	-	PF1748	-	putative sulfate transport system permease protein, ABC transporter
1798	 44.54	0	1626608..1627294	+	228	18978121	-	PF1749	-	putative sulfate transport integral membrane protein
1799	 42.41	0	1627288..1628301	+	337	18978122	-	PF1750	-	putative sugar-binding transport ATP-binding protein
1800	 42.74	0	1628290..1629363	-	357	18978123	-	PF1751	-	putative solute binding lipoprotein
1801	 44.26	0	1629292..1630206	+	304	18978124	-	PF1752	-	transposase
1802	 40.79	0	1630248..1631990	+	580	18978125	gltX	PF1753	-	glutamyl-tRNA synthetase
1803	 42.12	0	1632002..1632502	-	166	18978126	-	PF1754	-	fumarate hydratase
1804	 41.51	0	1632493..1633311	-	272	18978127	-	PF1755	-	fumarate hydratase
1805	 36.56	-1	1633325..1633510	-	61	33359573	-	PF1755.1n	-	hypothetical protein
1806	 42.61	0	1633559..1633903	+	114	18978128	-	PF1756	-	hypothetical protein
1807	 40.37	0	1633903..1634613	+	236	18978129	-	PF1757	-	hypothetical protein
1808	 40.83	0	1634603..1635562	-	319	18978130	-	PF1758	-	n-type ATP pyrophosphatase superfamily protein
1809	 37.34	0	1635746..1637191	+	481	18978131	-	PF1759	-	hypothetical protein
1810	 38.74	0	1637197..1638324	+	375	18978132	-	PF1760	-	hypothetical protein
1811	 38.73	0	1638428..1639594	+	388	18978133	-	PF1761	-	hypothetical protein
1812	 37.15	0	1639584..1640657	+	357	18978134	-	PF1762	-	hypothetical protein
1813	 42.10	0	1640658..1641821	-	387	18978135	-	PF1763	-	gtp1/obg family GTP-binding protein
1814	 44.54	0	1641930..1642607	+	225	18978136	-	PF1764	-	metal-dependent hydrolase
1815	 36.56	-1	1642596..1642874	-	92	18978137	-	PF1765	-	hypothetical protein
1816	 40.04	0	1642867..1643835	-	322	18978138	-	PF1766	-	signal recognition particle receptor
1817	 41.76	0	1644004..1644264	+	86	18978139	-	PF1767	-	2-keto acid:ferredoxin oxidoreductase subunit delta
1818	 43.32	0	1644267..1645457	+	396	18978140	-	PF1768	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
1819	 42.87	0	1645457..1646305	+	282	18978141	-	PF1769	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1820	 40.70	0	1646309..1646824	+	171	18978142	-	PF1770	-	2-oxoglutarate ferredoxin oxidoreductase subunit gamma
1821	 43.30	0	1646817..1647980	+	387	18978143	-	PF1771	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
1822	 43.14	0	1647977..1648822	+	281	18978144	-	PF1772	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1823	 40.70	0	1648819..1649361	+	180	18978145	-	PF1773	-	2-oxoglutarate ferredoxin oxidoreductase subunit gamma
1824	 40.66	0	1649441..1650532	+	363	18978146	-	PF1774	-	iron III ABC transporter, ATP-binding protein
1825	 38.60	0	1650498..1650953	-	151	18978147	-	PF1775	-	putative small multidrug export protein
1826	 39.41	0	1650968..1651543	-	191	18978148	-	PF1776	-	hypothetical protein
1827	 37.76	0	1651503..1652225	-	240	18978149	-	PF1777	-	hydrolase related to 2-haloalkanoic acid dehalogenase
1828	 44.16	0	1652268..1653551	-	427	18978150	glyA	PF1778	-	serine hydroxymethyltransferase
1829	 38.28	0	1653723..1654511	+	262	18978151	-	PF1779	-	putative ABC transporter
1830	 39.49	0	1654508..1655335	+	275	18978152	-	PF1780	-	putative ABC transporter
1831	 39.41	0	1655335..1656009	+	224	18978153	rnhB	PF1781	-	ribonuclease HII
1832	 38.39	0	1655977..1657518	-	513	18978154	-	PF1782	-	hypothetical protein
1833	 42.76	0	1657500..1658687	-	395	18978155	-	PF1783	-	molybdenum cofactor biosynthesis protein
1834	 39.12	0	1658728..1660092	-	454	18978156	-	PF1784	-	ADP-specific phosphofructokinase
1835	 41.06	0	1660205..1661227	+	340	18978157	-	PF1785	-	H/ACA RNA-protein complex component Cbf5p
1836	 40.54	0	1661230..1661562	-	110	18978158	-	PF1786	-	hypothetical protein
1837	 40.34	0	1661667..1662365	-	232	18978159	-	PF1787	-	acetyl-CoA synthetase
40.88	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.