IslandPathversion 1.0

IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.88 STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1640	 41.01	0	1487345..1488607	-	420	18977965	-	PF1593	-	peptide chain release factor 1
1641	 38.72	0	1488674..1489546	+	290	18977966	-	PF1594	-	dolichol-phosphate mannose synthase
1642	 35.00	-1	1489560..1489919	+	119	18977967	-	PF1595	-	hypothetical protein
1643	 36.04	-1	1489965..1490333	+	122	18977968	-	PF1596	-	hypothetical protein
1644	 36.62	-1	1490339..1491130	+	263	18977969	-	PF1597	-	heat shock protein x
1645	 39.07	0	1491167..1491724	+	185	18977970	-	PF1598	-	dCMP deaminase
1646	 36.98	-1	1491721..1492515	-	264	18977971	-	PF1599	-	undecaprenyl diphosphate synthase
1647	 42.53	0	1492512..1493033	-	173	18977972	-	PF1600	-	ferripyochelin binding protein
1648	 37.56	0	1493159..1493584	-	141	18977973	-	PF1601	-	AsnC family transcriptional regulator
1649	 43.86	0	1493675..1494937	-	420	18977974	-	PF1602	-	glutamate dehydrogenase
1650	 39.49	0	1495219..1496502	-	427	18977975	-	PF1603	-	Na antiporter
1651	 36.04	-1	1496502..1496981	-	159	18977976	-	PF1604	-	hypothetical protein
1652	 38.75	0	1496972..1497211	-	79	18977977	-	PF1605	-	hypothetical protein
1653	 36.57	-1	1497260..1497907	+	215	18977978	-	PF1606	-	dolichol-phosphate mannose synthase
1654	 41.14	0	1497925..1499436	+	503	18977979	-	PF1607	-	thymidine phosphorylase
1655	 40.25	0	1499439..1499843	-	134	18977980	-	PF1608	-	hypothetical protein
1656	 46.48	+1	1500370..1501464	+	364	18977981	-	PF1609	-	hypothetical protein
1657	 34.23	-1	1501744..1501965	-	73	18977982	-	PF1610	-	hypothetical protein
1658	 42.77	0	1502177..1502971	+	264	18977983	-	PF1611	-	cell division inhibitor minD
1659	 37.40	0	1502971..1503216	+	81	18977984	-	PF1612	-	hypothetical protein
1660	 40.70	0	1503210..1503467	-	85	33359569	-	PF1612.1n	-	hypothetical protein
1661	 33.62	-1	1503510..1503863	-	117	18977985	-	PF1613	-	ribonuclease P protein component 4
1662	 37.30	0	1503856..1505319	-	487	18977986	-	PF1614	-	hypothetical protein
1663	 42.67	0	1505326..1508238	-	970	18977987	-	PF1615	-	hypothetical protein
1664	 43.75	0	1508482..1509633	+	383	18977988	-	PF1616	-	myo-inositol-1-phosphate synthase
1665	 36.99	-1	1509677..1511017	+	446	18977989	-	PF1617	-	hypothetical protein
1666	 39.73	0	1511043..1511792	+	249	18977990	-	PF1618	-	ATP-binding protein phnp
1667	 43.74	0	1511908..1512570	-	220	18977991	-	PF1619	-	hypothetical protein
1668	 40.89	0	1512589..1512879	-	96	18977992	-	PF1620	-	hypothetical protein
1669	 38.70	0	1513367..1513906	-	179	18977993	-	PF1621	-	hypothetical protein
1670	 39.31	0	1514164..1514949	+	261	18977994	-	PF1622	-	n-type ATP pyrophosphatase superfamily protein
1671	 44.44	0	1514933..1515409	-	158	18977995	-	PF1623	-	pyruvoyl-dependent arginine decarboxylase
1672	 37.50	0	1515549..1516076	+	175	18977996	-	PF1624	-	hypothetical protein
1673	 42.11	0	1516352..1516750	+	132	18977997	-	PF1625	-	hypothetical protein
1674	 34.54	-1	1516742..1517239	-	165	18977998	-	PF1626	-	hypothetical protein
1675	 41.48	0	1517263..1518969	-	568	18977999	-	PF1627	-	glycyl-tRNA synthetase
1676	 40.00	0	1519033..1520292	+	419	18978000	-	PF1628	-	molybdenum cofactor biosynthesis protein A
1677	 40.40	0	1520405..1521097	+	230	18978001	-	PF1629	-	hypothetical protein
1678	 39.11	0	1521080..1522222	-	380	18978002	-	PF1630	-	UDP-n-acetylglucosamine 2-epimerase
1679	 41.15	0	1522219..1523523	-	434	18978003	-	PF1631	-	NDP-sugar dehydrogenase
1680	 39.18	0	1523720..1524814	+	364	18978004	-	PF1632	-	hypothetical protein
1681	 39.43	0	1524746..1525303	-	185	18978005	-	PF1633	-	hypothetical protein
1682	 40.78	0	1525300..1525608	-	102	18978006	-	PF1634	-	hypothetical protein
1683	 41.22	0	1525737..1527422	+	561	18978007	-	PF1635	-	ATP-dependent DNA ligase
1684	 40.21	0	1527419..1528189	-	256	18978008	-	PF1636	-	acetylglutamate kinase, putative
1685	 41.69	0	1528186..1529190	-	334	18978009	-	PF1637	-	mevalonate kinase
1686	 43.69	0	1529201..1530079	-	292	18978010	-	PF1638	-	hypothetical protein
1687	 39.60	0	1530127..1531164	-	345	18978011	-	PF1639	-	threonine synthase
1688	 41.87	0	1531206..1531814	-	202	18978012	rps2P	PF1640	-	30S ribosomal protein S2
1689	 40.88	0	1531828..1532847	-	339	18978013	-	PF1641	-	hypothetical protein
1690	 45.98	+1	1532854..1533027	-	57	18978014	rpoK	PF1642	-	DNA-directed RNA polymerase subunit K
1691	 41.31	0	1533155..1533367	-	70	18978015	-	PF1643	-	DNA-directed RNA polymerase subunit N
1692	 43.38	0	1533412..1533819	-	135	18978016	rps9p	PF1644	-	30S ribosomal protein S9P
1693	 42.66	0	1533831..1534259	-	142	18978017	rpl13p	PF1645	-	50S ribosomal protein L13P
1694	 41.87	0	1534266..1534628	-	120	18978018	-	PF1646	-	50S ribosomal protein L18e
1695	 38.80	0	1534790..1535575	-	261	18978019	-	PF1647	-	DNA-directed RNA polymerase subunit D
1696	 47.34	+1	1535609..1536022	-	137	18978020	rps11p	PF1648	-	30S ribosomal protein S11P
1697	 44.38	0	1536019..1536561	-	180	18978021	rps4p	PF1649	-	30S ribosomal protein S4
1698	 44.30	0	1536580..1537026	-	148	18978022	rps13p	PF1650	-	30S ribosomal protein S13P
1699	 40.82	0	1537136..1537723	-	195	18978023	-	PF1651	-	hypothetical protein
1700	 35.82	-1	1537755..1538318	+	187	18978024	-	PF1652	-	hypothetical protein
1701	 35.59	-1	1538315..1538668	-	117	18978025	-	PF1653	-	hypothetical protein
1702	 38.89	0	1538770..1540515	+	581	18978026	-	PF1654	-	ABC transporter
1703	 38.23	0	1540505..1542241	+	578	18978027	-	PF1655	-	ABC transporter
1704	 39.89	0	1542238..1542801	-	187	18978028	-	PF1656	-	putative NADH oxidase
1705	 38.21	0	1543003..1543884	+	293	18978029	-	PF1657	-	histidyl-tRNA synthetase
1706	 37.89	0	1543881..1544495	+	204	18978030	hisG	PF1658	-	ATP phosphoribosyltransferase catalytic subunit
1707	 40.51	0	1544485..1545612	+	375	18978031	hisD	PF1659	-	histidinol dehydrogenase
1708	 41.43	0	1545679..1546209	+	176	18978032	hisB	PF1660	-	imidazoleglycerol-phosphate dehydratase
1709	 41.03	0	1546209..1546793	+	194	18978033	hisH	PF1661	-	imidazole glycerol phosphate synthase subunit HisH
1710	 39.83	0	1546795..1547517	+	240	18978034	-	PF1662	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1711	 41.95	0	1547441..1548241	+	266	18978035	-	PF1663	-	imidazoleglycerol-phosphate synthase, cyclase subunit
1712	 38.29	0	1548216..1548881	+	221	18978036	-	PF1664	-	phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-atp
1713	 38.05	0	1548878..1549894	+	338	18978037	-	PF1665	-	histidinol-phosphate aminotransferase
1714	 37.90	0	1549879..1550601	+	240	33359570	-	PF1666	-	hypothetical protein
1715	 32.73	-2	1550606..1550935	+	109	18978039	-	PF1667	-	partial methionyl-tRNA synthetase - matches COOH terminus
1716	 34.16	-1	1551050..1551412	+	120	18978040	-	PF1668	-	hypothetical protein
1717	 37.78	0	1551413..1553143	-	576	18978041	-	PF1669	-	hypothetical protein
1718	 44.17	0	1553191..1555155	-	654	18978042	-	PF1670	-	alkaline serine protease
1719	 38.23	0	1555433..1556290	-	285	18978043	-	PF1671	-	hypothetical protein
1720	 34.98	-1	1556349..1557017	+	222	18978044	-	PF1672	-	hypothetical protein
1721	 38.61	0	1557144..1557749	-	201	18978045	-	PF1673	-	protoporphyrinogen oxidase
1722	 37.63	0	1558032..1558520	-	162	18978046	-	PF1674	-	hypothetical protein
1723	 38.22	0	1558540..1559235	+	231	18978047	-	PF1675	-	putative aspartate racemase
1724	 34.96	-1	1559206..1559943	-	245	18978048	-	PF1676	-	biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase
1725	 43.02	0	1560039..1560554	+	171	18978049	-	PF1677	-	hypothetical protein
1726	 40.14	0	1560860..1561858	+	332	161484707	-	PF1678	-	2-isopropylmalate synthase
1727	 43.04	0	1561855..1562997	+	380	18978051	-	PF1679	-	3-isopropylmalate dehydratase large subunit
1728	 39.80	0	1562994..1563488	+	164	18978052	leuD	PF1680	-	3-isopropylmalate dehydratase small subunit
1729	 49.40	+2	1563682..1563849	+	55	18978053	-	PF1681	-	hypothetical protein
1730	 39.90	0	1563887..1564708	+	273	18978054	-	PF1682	-	ribosomal protein s6 modification protein
1731	 42.30	0	1564705..1565697	+	330	18978055	argC	PF1683	-	N-acetyl-gamma-glutamyl-phosphate reductase
1732	 39.60	0	1565708..1566457	+	249	18978056	-	PF1684	-	acetylglutamate kinase
1733	 39.51	0	1566463..1567563	+	366	18978057	argD	PF1685	-	acetylornithine/acetyl-lysine aminotransferase
1734	 41.28	0	1567538..1568518	+	326	18978058	-	PF1686	-	acetyl-lysine deacetylase
1735	 40.00	0	1568672..1568986	+	104	18978059	-	PF1687	-	hypothetical protein
1736	 41.13	0	1568979..1569632	+	217	18978060	-	PF1688	-	transketolase N-terminal section
1737	 41.88	0	1569629..1570552	+	307	18978061	-	PF1689	-	transketolase C-terminal section
1738	 43.73	0	1570563..1571351	+	262	18978062	-	PF1690	-	3-deoxy-7-phosphoheptulonate synthase
1739	 37.90	0	1571339..1572346	+	335	18978063	aroB	PF1691	-	3-dehydroquinate synthase
40.88	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.