IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1571	 38.01	0	1423007..1423798	-	263	18977896	-	PF1524	-	hypothetical protein
1572	 33.98	-1	1424291..1424599	-	102	18977897	-	PF1525	-	hypothetical protein
1573	 33.85	-1	1424604..1424798	-	64	18977898	-	PF1526	-	hypothetical protein
1574	 35.82	-1	1424776..1425177	-	133	18977899	-	PF1527	-	hypothetical protein
1575	 43.27	0	1425303..1425896	-	197	18977900	-	PF1528	-	glutamine amidotransferase subunit PdxT
1576	 44.94	+1	1425928..1426935	-	335	18977901	-	PF1529	-	pyridoxine biosynthesis protein
1577	 42.95	0	1427036..1427794	-	252	18977902	-	PF1530	-	ribulose-1,5-biphosphate synthetase
1578	 42.33	0	1427923..1429212	+	429	18977903	-	PF1531	-	thiamine biosynthesis protein ThiC
1579	 41.69	0	1429318..1430634	+	438	18977904	-	PF1532	-	NADH oxidase
1580	 41.74	0	1430753..1432096	+	447	18977905	-	PF1533	-	nodulation protein nfeD
1581	 42.47	0	1432096..1432905	+	269	18977906	-	PF1534	-	stomatin
1582	 40.71	0	1432910..1435429	-	839	18977907	-	PF1535	-	alpha-glucan phosphorylase
1583	 41.71	0	1435432..1435992	-	186	161484708	-	PF1536	-	hypothetical protein
1584	 36.50	-1	1435967..1436914	-	315	18977909	-	PF1537	-	hypothetical protein
1585	 39.68	0	1436914..1438173	-	419	18977910	-	PF1538	-	N-ethylammeline chlorohydrolase
1586	 39.87	0	1438255..1439157	+	300	18977911	-	PF1539	-	dihydroorotate dehydrogenase 1B
1587	 43.27	0	1439252..1440640	+	462	18977912	-	PF1540	-	ADP forming acetyl coenzyme A synthetase
1588	 42.05	0	1440649..1440843	-	64	33359566	rpl37e	PF1541	-	50S ribosomal protein L37e
1589	 42.86	0	1440849..1441079	-	76	18977914	-	PF1542	-	small nuclear ribonucleoprotein
1590	 36.62	-1	1441333..1441788	+	151	18977915	-	PF1543	-	AsnC family transcriptional regulator
1591	 34.29	-1	1441806..1443272	+	488	18977916	-	PF1544	-	hypothetical protein
1592	 37.20	0	1443253..1443588	-	111	18977917	nac	PF1545	-	nascent polypeptide-associated complex protein
1593	 35.38	-1	1444121..1444462	-	113	18977918	-	PF1546	-	hypothetical protein
1594	 42.79	0	1444497..1445543	-	348	18977919	-	PF1547	-	endoglucanase
1595	 35.28	-1	1445653..1446831	+	392	18977920	-	PF1548	-	hypothetical protein
1596	 43.34	0	1446828..1447856	+	342	18977921	-	PF1549	-	RNA 3'-terminal-phosphate cyclase
1597	 38.01	0	1447868..1448380	+	170	18977922	-	PF1550	-	hypothetical protein
1598	 39.69	0	1448377..1449651	-	424	18977923	-	PF1551	-	hypothetical protein
1599	 38.46	0	1449703..1450131	+	142	18977924	-	PF1552	-	hypothetical protein
1600	 40.17	0	1450145..1451080	+	311	18977925	-	PF1553	-	nol1-nop2-sun family nucleolar protein I
1601	 38.49	0	1451087..1451338	+	83	18977926	-	PF1554	-	hypothetical protein
1602	 38.56	0	1451335..1452558	-	407	18977927	truD	PF1555	-	tRNA pseudouridine synthase D
1603	 43.61	0	1452569..1452928	-	119	18977928	-	PF1556	-	peptidyl-tRNA hydrolase
1604	 37.41	0	1452941..1453774	-	277	18977929	-	PF1557	-	hypothetical protein
1605	 42.90	0	1453842..1454489	-	215	18977930	-	PF1558	-	30S ribosomal protein S7P
1606	 44.14	0	1454496..1454939	-	147	18977931	rps12P	PF1559	-	30S ribosomal protein S12P
1607	 37.90	0	1454950..1455387	-	145	18977932	nusA	PF1560	-	transcription elongation factor NusA-like protein
1608	 41.00	0	1455396..1455695	-	99	18977933	-	PF1561	-	50S ribosomal protein L30e
1609	 40.70	0	1455699..1456892	-	397	18977934	-	PF1562	-	DNA-directed RNA polymerase subunit A''
1610	 42.55	0	1456903..1459626	-	907	18977935	-	PF1563	-	DNA-directed RNA polymerase subunit alpha
1611	 42.99	0	1459639..1462992	-	1117	18977936	-	PF1564	-	DNA-directed RNA polymerase subunit beta
1612	 38.96	0	1463013..1463261	-	82	18977937	rpoH	PF1565	-	DNA-directed RNA polymerase subunit H
1613	 36.83	-1	1463491..1464120	-	209	33359567	-	PF1566	-	hypothetical protein
1614	 41.01	0	1464340..1465173	-	277	18977939	-	PF1567	-	exosome complex RNA-binding protein Rrp42
1615	 40.50	0	1465163..1465915	-	250	18977940	-	PF1568	-	exosome complex exonuclease Rrp41
1616	 39.62	0	1465890..1466684	-	264	18977941	-	PF1569	-	exosome complex RNA-binding protein Rrp4
1617	 39.38	0	1466681..1467391	-	236	18977942	-	PF1570	-	putative RNA-associated protein
1618	 40.10	0	1467425..1468207	-	260	18977943	-	PF1571	-	proteasome subunit alpha
1619	 36.74	-1	1468341..1468868	+	175	18977944	-	PF1572	-	hypothetical protein
1620	 39.25	0	1468976..1470343	+	455	18977945	-	PF1573	-	hypothetical protein
1621	 39.43	0	1470356..1471684	+	442	18977946	-	PF1574	-	hypothetical protein
1622	 35.52	-1	1471662..1472255	-	197	18977947	-	PF1575	-	hypothetical protein
1623	 38.44	0	1472245..1472655	-	136	18977948	-	PF1576	-	hypothetical protein
1624	 37.66	0	1472660..1473907	-	415	18977949	-	PF1577	-	hypothetical protein
1625	 41.78	0	1473914..1475062	-	382	18977950	-	PF1578	-	DNA topoisomerase VI subunit A
1626	 42.41	0	1475037..1476743	-	568	18977951	-	PF1579	-	DNA topoisomerase VI subunit B
1627	 39.19	0	1476753..1477418	-	221	18977952	-	PF1580	-	putative RNA-processing protein
1628	 39.20	0	1477391..1478191	-	266	18977953	-	PF1581	-	rio1 protein, putative
1629	 43.57	0	1478198..1478539	-	113	18977954	-	PF1582	-	translation initiation factor IF-1A
1630	 37.27	0	1478690..1479679	+	329	18977955	-	PF1583	-	protease IV
1631	 36.97	-1	1479676..1480143	+	155	33359568	-	PF1584	-	hypothetical protein
1632	 38.30	0	1480146..1481171	+	341	18977957	-	PF1585	-	hypothetical protein
1633	 39.79	0	1481131..1482198	-	355	18977958	-	PF1586	-	hydrogenase expression/formation protein
1634	 35.51	-1	1482153..1483025	+	290	18977959	-	PF1587	-	hypothetical protein
1635	 39.74	0	1483022..1483645	-	207	18977960	-	PF1588	-	hypothetical protein
1636	 36.51	-1	1483702..1484457	+	251	18977961	-	PF1589	-	hypothetical protein
1637	 40.00	0	1484516..1485025	+	169	18977962	-	PF1590	-	mutt putative
1638	 42.53	0	1485067..1485903	+	278	18977963	-	PF1591	-	dipeptide transport protein
1639	 42.21	0	1486031..1487371	+	446	18977964	-	PF1592	-	tryptophan synthase subunit beta
1640	 41.01	0	1487345..1488607	-	420	18977965	-	PF1593	-	peptide chain release factor 1
1641	 38.72	0	1488674..1489546	+	290	18977966	-	PF1594	-	dolichol-phosphate mannose synthase
1642	 35.00	-1	1489560..1489919	+	119	18977967	-	PF1595	-	hypothetical protein
1643	 36.04	-1	1489965..1490333	+	122	18977968	-	PF1596	-	hypothetical protein
1644	 36.62	-1	1490339..1491130	+	263	18977969	-	PF1597	-	heat shock protein x
1645	 39.07	0	1491167..1491724	+	185	18977970	-	PF1598	-	dCMP deaminase
1646	 36.98	-1	1491721..1492515	-	264	18977971	-	PF1599	-	undecaprenyl diphosphate synthase
1647	 42.53	0	1492512..1493033	-	173	18977972	-	PF1600	-	ferripyochelin binding protein
1648	 37.56	0	1493159..1493584	-	141	18977973	-	PF1601	-	AsnC family transcriptional regulator
1649	 43.86	0	1493675..1494937	-	420	18977974	-	PF1602	-	glutamate dehydrogenase
1650	 39.49	0	1495219..1496502	-	427	18977975	-	PF1603	-	Na antiporter
1651	 36.04	-1	1496502..1496981	-	159	18977976	-	PF1604	-	hypothetical protein
1652	 38.75	0	1496972..1497211	-	79	18977977	-	PF1605	-	hypothetical protein
1653	 36.57	-1	1497260..1497907	+	215	18977978	-	PF1606	-	dolichol-phosphate mannose synthase
1654	 41.14	0	1497925..1499436	+	503	18977979	-	PF1607	-	thymidine phosphorylase
1655	 40.25	0	1499439..1499843	-	134	18977980	-	PF1608	-	hypothetical protein
1656	 46.48	+1	1500370..1501464	+	364	18977981	-	PF1609	-	hypothetical protein
1657	 34.23	-1	1501744..1501965	-	73	18977982	-	PF1610	-	hypothetical protein
1658	 42.77	0	1502177..1502971	+	264	18977983	-	PF1611	-	cell division inhibitor minD
1659	 37.40	0	1502971..1503216	+	81	18977984	-	PF1612	-	hypothetical protein
1660	 40.70	0	1503210..1503467	-	85	33359569	-	PF1612.1n	-	hypothetical protein
1661	 33.62	-1	1503510..1503863	-	117	18977985	-	PF1613	-	ribonuclease P protein component 4
1662	 37.30	0	1503856..1505319	-	487	18977986	-	PF1614	-	hypothetical protein
1663	 42.67	0	1505326..1508238	-	970	18977987	-	PF1615	-	hypothetical protein
1664	 43.75	0	1508482..1509633	+	383	18977988	-	PF1616	-	myo-inositol-1-phosphate synthase
1665	 36.99	-1	1509677..1511017	+	446	18977989	-	PF1617	-	hypothetical protein
1666	 39.73	0	1511043..1511792	+	249	18977990	-	PF1618	-	ATP-binding protein phnp
1667	 43.74	0	1511908..1512570	-	220	18977991	-	PF1619	-	hypothetical protein
1668	 40.89	0	1512589..1512879	-	96	18977992	-	PF1620	-	hypothetical protein
1669	 38.70	0	1513367..1513906	-	179	18977993	-	PF1621	-	hypothetical protein
1670	 39.31	0	1514164..1514949	+	261	18977994	-	PF1622	-	n-type ATP pyrophosphatase superfamily protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.