IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1516	 44.11	0	1374705..1375985	+	426	18977841	-	PF1469	-	glutamate/aspartate transport protein
1517	 40.71	0	1375936..1377114	-	392	18977842	-	PF1470	-	hypothetical protein
1518	 36.60	-1	1377177..1377758	+	193	18977843	-	PF1471	-	hypothetical protein
1519	 44.01	0	1377755..1378906	-	383	18977844	-	PF1472	-	aspartate/serine transaminase
1520	 34.77	-1	1378926..1379621	+	231	18977845	-	PF1473	-	hypothetical protein
1521	 34.01	-1	1379604..1379900	-	98	18977846	-	PF1474	-	hypothetical protein
1522	 48.72	+2	1379965..1380120	+	51	18977847	rpl40e	PF1475	-	50S ribosomal protein L40e
1523	 37.08	-1	1380121..1380600	-	159	18977848	-	PF1476	-	hypothetical protein
1524	 43.81	0	1380572..1382260	-	562	18977849	-	PF1477	-	methylmalonyl-CoA mutase
1525	 37.66	0	1382407..1382637	+	76	18977850	-	PF1478	-	hypothetical protein
1526	 43.68	0	1382919..1383440	+	173	18977851	-	PF1479	-	putative oxidoreductase, Fe-S subunit
1527	 42.54	0	1383451..1385199	+	582	18977852	-	PF1480	-	formaldehyde:ferredoxin oxidoreductase wor5
1528	 40.28	0	1385396..1385827	+	143	18977853	-	PF1481	-	hypothetical protein
1529	 40.09	0	1385861..1386082	+	73	18977854	-	PF1482	-	hypothetical protein
1530	 35.80	-1	1386483..1387211	+	242	18977855	-	PF1483	-	hypothetical protein
1531	 39.13	0	1387381..1388070	-	229	18977856	-	PF1484	-	hypothetical protein
1532	 38.72	0	1388279..1388575	+	98	18977857	-	PF1485	-	hypothetical protein
1533	 44.27	0	1388586..1388978	+	130	18977858	-	PF1486	-	hypothetical protein
1534	 38.31	0	1388969..1389892	-	307	18977859	-	PF1487	-	thiamine biosynthesis protein ThiI
1535	 39.01	0	1389982..1390650	+	222	18977860	-	PF1488	-	hypothetical protein
1536	 37.57	0	1390696..1391238	+	180	18977861	-	PF1489	-	hypothetical protein
1537	 37.96	0	1391224..1391871	-	215	18977862	-	PF1490	-	hypothetical protein
1538	 36.76	-1	1391951..1392154	+	67	18977863	rps17E	PF1491	-	30S ribosomal protein S17e
1539	 40.00	0	1392151..1392555	-	134	18977864	-	PF1492	-	glycine cleavage system protein H
1540	 40.26	0	1392619..1393080	+	153	18977865	-	PF1493	-	hypothetical protein
1541	 39.55	0	1393153..1393731	+	192	18977866	-	PF1494	-	hypothetical protein
1542	 41.06	0	1393705..1394778	-	357	18977867	-	PF1495	-	gtp1/obg family GTP-binding protein
1543	 37.95	0	1394793..1395809	-	338	18977868	-	PF1496	-	hypothetical protein
1544	 42.52	0	1395881..1397077	+	398	18977869	-	PF1497	-	alanine aminotransferase
1545	 39.05	0	1397791..1398210	+	139	18977870	-	PF1498	-	hypothetical protein
1546	 42.83	0	1398214..1398666	+	150	18977871	-	PF1499	-	30S ribosomal protein S19e
1547	 36.92	-1	1398731..1399009	+	92	18977872	-	PF1500	-	hypothetical protein
1548	 37.91	0	1399006..1399617	+	203	18977873	-	PF1501	-	hypothetical protein
1549	 38.96	0	1399597..1401159	-	520	18977874	-	PF1502	-	hypothetical protein
1550	 41.67	0	1401156..1401527	-	123	18977875	-	PF1503	-	hypothetical protein
1551	 38.91	0	1401394..1404336	+	980	18977876	-	PF1504	-	large helicase-related protein
1552	 37.67	0	1404410..1406506	+	698	18977877	-	PF1505	-	hypothetical protein
1553	 38.05	0	1406599..1408695	+	698	18977878	-	PF1506	-	hypothetical protein
1554	 40.69	0	1408709..1409809	+	366	18977879	-	PF1507	-	cell division protein FtsZ
1555	 35.02	-1	1409796..1410389	+	197	18977880	-	PF1508	-	hypothetical protein
1556	 39.18	0	1410437..1411018	+	193	18977881	-	PF1509	-	hypothetical protein
1557	 39.04	0	1411026..1411463	+	145	18977882	-	PF1510	-	hypothetical protein
1558	 35.32	-1	1411468..1411869	+	133	18977883	-	PF1511	-	hypothetical protein
1559	 37.35	0	1411866..1412114	-	82	18977884	-	PF1512	-	hypothetical protein
1560	 36.48	-1	1412270..1412746	+	158	18977885	-	PF1513	-	hypothetical protein
1561	 35.12	-1	1412755..1413369	+	204	18977886	-	PF1514	-	hypothetical protein
1562	 41.62	0	1413455..1414021	-	188	18977887	-	PF1515	-	GMP synthase subunit A
1563	 42.99	0	1414031..1414972	-	313	18977888	-	PF1516	-	GMP synthase subunit B
1564	 41.19	0	1415074..1416078	-	334	18977889	purP	PF1517	-	5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate--formate ligase
1565	 42.36	0	1416190..1417230	+	346	18977890	-	PF1518	-	thiamin-binding periplasmic protein precursor
1566	 40.46	0	1417217..1418212	-	331	18977891	-	PF1519	-	sugar-binding transport ATP-binding protein
1567	 41.70	0	1418206..1419771	-	521	18977892	-	PF1520	-	ABC transporter integral membrane protein
1568	 40.57	0	1419794..1421797	-	667	18977893	-	PF1521	-	formate dehydrogenase alpha chain
1569	 36.43	-1	1421852..1422625	-	257	18977894	-	PF1522	-	putative ABC transporter
1570	 38.56	0	1422597..1422998	-	133	18977895	-	PF1523	-	hypothetical protein
1571	 38.01	0	1423007..1423798	-	263	18977896	-	PF1524	-	hypothetical protein
1572	 33.98	-1	1424291..1424599	-	102	18977897	-	PF1525	-	hypothetical protein
1573	 33.85	-1	1424604..1424798	-	64	18977898	-	PF1526	-	hypothetical protein
1574	 35.82	-1	1424776..1425177	-	133	18977899	-	PF1527	-	hypothetical protein
1575	 43.27	0	1425303..1425896	-	197	18977900	-	PF1528	-	glutamine amidotransferase subunit PdxT
1576	 44.94	+1	1425928..1426935	-	335	18977901	-	PF1529	-	pyridoxine biosynthesis protein
1577	 42.95	0	1427036..1427794	-	252	18977902	-	PF1530	-	ribulose-1,5-biphosphate synthetase
1578	 42.33	0	1427923..1429212	+	429	18977903	-	PF1531	-	thiamine biosynthesis protein ThiC
1579	 41.69	0	1429318..1430634	+	438	18977904	-	PF1532	-	NADH oxidase
1580	 41.74	0	1430753..1432096	+	447	18977905	-	PF1533	-	nodulation protein nfeD
1581	 42.47	0	1432096..1432905	+	269	18977906	-	PF1534	-	stomatin
1582	 40.71	0	1432910..1435429	-	839	18977907	-	PF1535	-	alpha-glucan phosphorylase
1583	 41.71	0	1435432..1435992	-	186	161484708	-	PF1536	-	hypothetical protein
1584	 36.50	-1	1435967..1436914	-	315	18977909	-	PF1537	-	hypothetical protein
1585	 39.68	0	1436914..1438173	-	419	18977910	-	PF1538	-	N-ethylammeline chlorohydrolase
1586	 39.87	0	1438255..1439157	+	300	18977911	-	PF1539	-	dihydroorotate dehydrogenase 1B
1587	 43.27	0	1439252..1440640	+	462	18977912	-	PF1540	-	ADP forming acetyl coenzyme A synthetase
1588	 42.05	0	1440649..1440843	-	64	33359566	rpl37e	PF1541	-	50S ribosomal protein L37e
1589	 42.86	0	1440849..1441079	-	76	18977914	-	PF1542	-	small nuclear ribonucleoprotein
1590	 36.62	-1	1441333..1441788	+	151	18977915	-	PF1543	-	AsnC family transcriptional regulator
1591	 34.29	-1	1441806..1443272	+	488	18977916	-	PF1544	-	hypothetical protein
1592	 37.20	0	1443253..1443588	-	111	18977917	nac	PF1545	-	nascent polypeptide-associated complex protein
1593	 35.38	-1	1444121..1444462	-	113	18977918	-	PF1546	-	hypothetical protein
1594	 42.79	0	1444497..1445543	-	348	18977919	-	PF1547	-	endoglucanase
1595	 35.28	-1	1445653..1446831	+	392	18977920	-	PF1548	-	hypothetical protein
1596	 43.34	0	1446828..1447856	+	342	18977921	-	PF1549	-	RNA 3'-terminal-phosphate cyclase
1597	 38.01	0	1447868..1448380	+	170	18977922	-	PF1550	-	hypothetical protein
1598	 39.69	0	1448377..1449651	-	424	18977923	-	PF1551	-	hypothetical protein
1599	 38.46	0	1449703..1450131	+	142	18977924	-	PF1552	-	hypothetical protein
1600	 40.17	0	1450145..1451080	+	311	18977925	-	PF1553	-	nol1-nop2-sun family nucleolar protein I
1601	 38.49	0	1451087..1451338	+	83	18977926	-	PF1554	-	hypothetical protein
1602	 38.56	0	1451335..1452558	-	407	18977927	truD	PF1555	-	tRNA pseudouridine synthase D
1603	 43.61	0	1452569..1452928	-	119	18977928	-	PF1556	-	peptidyl-tRNA hydrolase
1604	 37.41	0	1452941..1453774	-	277	18977929	-	PF1557	-	hypothetical protein
1605	 42.90	0	1453842..1454489	-	215	18977930	-	PF1558	-	30S ribosomal protein S7P
1606	 44.14	0	1454496..1454939	-	147	18977931	rps12P	PF1559	-	30S ribosomal protein S12P
1607	 37.90	0	1454950..1455387	-	145	18977932	nusA	PF1560	-	transcription elongation factor NusA-like protein
1608	 41.00	0	1455396..1455695	-	99	18977933	-	PF1561	-	50S ribosomal protein L30e
1609	 40.70	0	1455699..1456892	-	397	18977934	-	PF1562	-	DNA-directed RNA polymerase subunit A''
1610	 42.55	0	1456903..1459626	-	907	18977935	-	PF1563	-	DNA-directed RNA polymerase subunit alpha
1611	 42.99	0	1459639..1462992	-	1117	18977936	-	PF1564	-	DNA-directed RNA polymerase subunit beta
1612	 38.96	0	1463013..1463261	-	82	18977937	rpoH	PF1565	-	DNA-directed RNA polymerase subunit H
1613	 36.83	-1	1463491..1464120	-	209	33359567	-	PF1566	-	hypothetical protein
1614	 41.01	0	1464340..1465173	-	277	18977939	-	PF1567	-	exosome complex RNA-binding protein Rrp42
1615	 40.50	0	1465163..1465915	-	250	18977940	-	PF1568	-	exosome complex exonuclease Rrp41
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.