IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1448	 38.35	0	1315411..1316187	+	258	18977773	-	PF1401	-	peptidyl-prolyl cis-trans isomerase
1449	 35.12	-1	1316220..1317116	+	298	18977774	-	PF1402	-	hypothetical protein
1450	 37.11	-1	1317131..1317739	+	202	18977775	-	PF1403	-	hypothetical protein
1451	 41.22	0	1317828..1318448	+	206	18977776	-	PF1404	-	proteasome, subunit beta (multicatalytic endopeptidase complex beta subunit)
1452	 40.39	0	1318458..1320413	+	651	18977777	-	PF1405	-	cleavage and polyadenylation specifity factor protein
1453	 38.12	0	1320418..1321755	+	445	18977778	-	PF1406	-	threonine synthase
1454	 40.71	0	1321789..1322466	+	225	18977779	pyrH	PF1407	-	uridylate kinase
1455	 44.33	0	1322707..1324824	+	705	18977780	-	PF1408	-	putative dipeptide-binding protein
1456	 40.74	0	1324943..1325941	+	332	18977781	-	PF1409	-	dipeptide transport system permease protein
1457	 41.23	0	1325953..1327104	+	383	18977782	-	PF1410	-	dipeptide transport system permease protein
1458	 41.79	0	1327097..1328077	+	326	18977783	-	PF1411	-	dipeptide transport ATP-binding protein
1459	 41.92	0	1328088..1329077	+	329	18977784	-	PF1412	-	dipeptide transport ATP-binding protein
1460	 36.41	-1	1329102..1329491	+	129	18977785	-	PF1413	-	hypothetical protein
1461	 40.27	0	1329579..1330601	+	340	18977786	-	PF1414	-	flap endonuclease-1
1462	 38.32	0	1330591..1331592	-	333	18977787	-	PF1415	-	met-10+ protein
1463	 29.74	-2	1331601..1332017	-	138	18977788	-	PF1416	-	hypothetical protein
1464	 31.33	-2	1332169..1332318	-	49	33359563	-	PF1417	-	hypothetical protein
1465	 39.77	0	1332309..1333163	-	284	18977790	-	PF1418	-	hypothetical protein
1466	 38.22	0	1333376..1334071	+	231	18977791	-	PF1419	-	phosphoglycolate phosphatase
1467	 33.33	-2	1334242..1334325	+	27	18977792	-	PF1420	-	hypothetical protein
1468	 43.88	0	1334722..1336086	-	454	18977793	-	PF1421	-	4-aminobutyrate aminotransferase
1469	 39.96	0	1336194..1337264	-	356	18977794	-	PF1422	-	thioredoxin reductase
1470	 43.06	0	1337413..1337916	+	167	18977795	-	PF1423	-	putative monovalent cation/H+ antiporter subunit E
1471	 43.14	0	1337913..1338167	+	84	18977796	-	PF1424	-	putative monovalent cation/H+ antiporter subunit F
1472	 42.40	0	1338164..1338538	+	124	18977797	-	PF1425	-	putative monovalent cation/H+ antiporter subunit G
1473	 44.33	0	1338495..1338785	+	96	18977798	-	PF1426	-	hypothetical protein
1474	 44.33	0	1338782..1339081	+	99	18977799	-	PF1427	-	hypothetical protein
1475	 46.98	+1	1339074..1339520	+	148	18977800	-	PF1428	-	putative monovalent cation/H+ antiporter subunit B
1476	 40.96	0	1339517..1339870	+	117	18977801	-	PF1429	-	putative monovalent cation/H+ antiporter subunit C
1477	 43.05	0	1339867..1341399	+	510	18977802	-	PF1430	-	putative monovalent cation/H+ antiporter subunit D
1478	 40.62	0	1341392..1341748	+	118	33359564	-	PF1431	-	hypothetical protein
1479	 44.64	+1	1341753..1342256	+	167	18977804	-	PF1432	-	mbh10 NADH dehydrogenase subunit
1480	 42.53	0	1342249..1342770	+	173	18977805	-	PF1433	-	mbh11 membrane bound hydrogenase beta (NADH dehydrogenase)
1481	 43.69	0	1342767..1344050	+	427	18977806	-	PF1434	-	mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase)
1482	 42.24	0	1344053..1345018	+	321	18977807	-	PF1435	-	mbh13 NADH dehydrogenase subunit
1483	 42.38	0	1345015..1345434	+	139	18977808	-	PF1436	-	NADH-plastoquinone oxidoreductase subunit
1484	 39.39	0	1345546..1346850	+	434	18977809	-	PF1437	-	hypothetical protein
1485	 40.94	0	1346821..1348725	-	634	18977810	-	PF1438	-	hypothetical protein
1486	 39.08	0	1348779..1349126	-	115	33359565	-	PF1439	-	hypothetical protein
1487	 39.95	0	1349191..1350399	+	402	18977812	-	PF1440	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1488	 40.67	0	1350388..1351014	-	208	18977813	-	PF1441	-	NADH dehydrogenase subunit I
1489	 43.71	0	1351020..1352195	-	391	18977814	-	PF1442	-	NADH dehydrogenase subunit D
1490	 40.19	0	1352206..1352730	-	174	18977815	-	PF1443	-	NADH dehydrogenase subunit C
1491	 41.28	0	1352727..1353305	-	192	18977816	-	PF1444	-	NADH dehydrogenase subunit B
1492	 42.04	0	1353316..1354245	-	309	18977817	-	PF1445	-	NADH dehydrogenase subunit
1493	 43.24	0	1354249..1356105	-	618	18977818	-	PF1446	-	NADH dehydrogenase subunit M
1494	 43.86	0	1356102..1357583	-	493	18977819	-	PF1447	-	NADH dehydrogenase subunit N
1495	 42.61	0	1357580..1357924	-	114	18977820	-	PF1448	-	putative monovalent cation/H+ antiporter subunit C
1496	 45.75	+1	1357921..1358637	-	238	18977821	-	PF1449	-	putative monovalent cation/H+ antiporter subunit B
1497	 44.21	0	1358631..1358915	-	94	18977822	-	PF1450	-	hypothetical protein
1498	 43.73	0	1358912..1359286	-	124	18977823	-	PF1451	-	putative monovalent cation/H+ antiporter subunit G
1499	 43.14	0	1359283..1359537	-	84	18977824	-	PF1452	-	putative monovalent cation/H+ antiporter subunit F
1500	 40.63	0	1359534..1360040	-	168	18977825	-	PF1453	-	putative monovalent cation/H+ antiporter subunit E
1501	 40.63	0	1360246..1362012	+	588	18977826	-	PF1454	-	hypothetical protein
1502	 35.21	-1	1362022..1362288	+	88	18977827	-	PF1455	-	hypothetical protein
1503	 37.29	0	1362325..1362855	+	176	18977828	-	PF1456	-	hypothetical protein
1504	 38.79	0	1362930..1363259	+	109	18977829	-	PF1457	-	glutaredoxin/thioredoxin-like protein
1505	 42.20	0	1363240..1364175	-	311	18977830	-	PF1458	-	sugar kinase
1506	 40.84	0	1364250..1365701	+	483	18977831	-	PF1459	-	hypothetical protein
1507	 38.93	0	1365679..1367412	-	577	18977832	-	PF1460	-	hypothetical protein
1508	 42.07	0	1367474..1368790	+	438	18977833	-	PF1461	-	glutamyl-tRNA(Gln) amidotransferase subunit D
1509	 41.92	0	1369129..1371015	+	628	18977834	-	PF1462	-	glutamyl-tRNA(Gln) amidotransferase subunit E
1510	 37.93	0	1371124..1371711	+	195	18977835	-	PF1463	-	hypothetical protein
1511	 35.16	-1	1371708..1372529	+	273	18977836	-	PF1464	-	hypothetical protein
1512	 36.23	-1	1372508..1373302	+	264	18977837	-	PF1465	-	hypothetical protein
1513	 38.32	0	1373191..1373691	+	166	18977838	-	PF1466	-	hypothetical protein
1514	 35.08	-1	1373666..1374181	+	171	18977839	-	PF1467	-	putative ABC transporter
1515	 35.90	-1	1374195..1374467	+	90	18977840	-	PF1468	-	hypothetical protein
1516	 44.11	0	1374705..1375985	+	426	18977841	-	PF1469	-	glutamate/aspartate transport protein
1517	 40.71	0	1375936..1377114	-	392	18977842	-	PF1470	-	hypothetical protein
1518	 36.60	-1	1377177..1377758	+	193	18977843	-	PF1471	-	hypothetical protein
1519	 44.01	0	1377755..1378906	-	383	18977844	-	PF1472	-	aspartate/serine transaminase
1520	 34.77	-1	1378926..1379621	+	231	18977845	-	PF1473	-	hypothetical protein
1521	 34.01	-1	1379604..1379900	-	98	18977846	-	PF1474	-	hypothetical protein
1522	 48.72	+2	1379965..1380120	+	51	18977847	rpl40e	PF1475	-	50S ribosomal protein L40e
1523	 37.08	-1	1380121..1380600	-	159	18977848	-	PF1476	-	hypothetical protein
1524	 43.81	0	1380572..1382260	-	562	18977849	-	PF1477	-	methylmalonyl-CoA mutase
1525	 37.66	0	1382407..1382637	+	76	18977850	-	PF1478	-	hypothetical protein
1526	 43.68	0	1382919..1383440	+	173	18977851	-	PF1479	-	putative oxidoreductase, Fe-S subunit
1527	 42.54	0	1383451..1385199	+	582	18977852	-	PF1480	-	formaldehyde:ferredoxin oxidoreductase wor5
1528	 40.28	0	1385396..1385827	+	143	18977853	-	PF1481	-	hypothetical protein
1529	 40.09	0	1385861..1386082	+	73	18977854	-	PF1482	-	hypothetical protein
1530	 35.80	-1	1386483..1387211	+	242	18977855	-	PF1483	-	hypothetical protein
1531	 39.13	0	1387381..1388070	-	229	18977856	-	PF1484	-	hypothetical protein
1532	 38.72	0	1388279..1388575	+	98	18977857	-	PF1485	-	hypothetical protein
1533	 44.27	0	1388586..1388978	+	130	18977858	-	PF1486	-	hypothetical protein
1534	 38.31	0	1388969..1389892	-	307	18977859	-	PF1487	-	thiamine biosynthesis protein ThiI
1535	 39.01	0	1389982..1390650	+	222	18977860	-	PF1488	-	hypothetical protein
1536	 37.57	0	1390696..1391238	+	180	18977861	-	PF1489	-	hypothetical protein
1537	 37.96	0	1391224..1391871	-	215	18977862	-	PF1490	-	hypothetical protein
1538	 36.76	-1	1391951..1392154	+	67	18977863	rps17E	PF1491	-	30S ribosomal protein S17e
1539	 40.00	0	1392151..1392555	-	134	18977864	-	PF1492	-	glycine cleavage system protein H
1540	 40.26	0	1392619..1393080	+	153	18977865	-	PF1493	-	hypothetical protein
1541	 39.55	0	1393153..1393731	+	192	18977866	-	PF1494	-	hypothetical protein
1542	 41.06	0	1393705..1394778	-	357	18977867	-	PF1495	-	gtp1/obg family GTP-binding protein
1543	 37.95	0	1394793..1395809	-	338	18977868	-	PF1496	-	hypothetical protein
1544	 42.52	0	1395881..1397077	+	398	18977869	-	PF1497	-	alanine aminotransferase
1545	 39.05	0	1397791..1398210	+	139	18977870	-	PF1498	-	hypothetical protein
1546	 42.83	0	1398214..1398666	+	150	18977871	-	PF1499	-	30S ribosomal protein S19e
1547	 36.92	-1	1398731..1399009	+	92	18977872	-	PF1500	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.