IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1406	 36.20	-1	1277390..1278295	+	301	18977731	-	PF1359	-	glycosyl transferase
1407	 36.34	-1	1278292..1279389	+	365	18977732	-	PF1360	-	hypothetical protein
1408	 33.94	-1	1279379..1280530	-	383	18977733	-	PF1361	-	glycosyl transferase
1409	 35.92	-1	1280539..1281777	-	412	18977734	-	PF1362	-	hypothetical protein
1410	 35.50	-1	1281755..1282723	-	322	18977735	-	PF1363	-	glycosyl transferase
1411	 36.99	-1	1282720..1283841	-	373	18977736	-	PF1364	-	hypothetical protein
1412	 39.46	0	1283829..1284269	+	146	18977737	-	PF1365	-	hypothetical protein
1413	 44.62	0	1284317..1285096	-	259	18977738	-	PF1366	-	transposase
1414	 44.27	0	1285169..1285543	+	124	18977739	rpl7ae	PF1367	-	50S ribosomal protein L7Ae
1415	 46.30	+1	1285590..1285805	+	71	18977740	rps28e	PF1368	-	30S ribosomal protein S28e
1416	 47.26	+1	1285811..1286011	+	66	18977741	-	PF1369	-	50S ribosomal protein L24e
1417	 35.87	-1	1286152..1286427	+	91	18977742	-	PF1370	-	hypothetical protein
1418	 37.55	0	1286462..1287292	+	276	18977743	-	PF1371	-	hypothetical protein
1419	 36.75	-1	1287799..1288032	+	77	18977744	-	PF1372	-	hypothetical protein
1420	 37.88	0	1288269..1289126	+	285	18977745	-	PF1373	-	cation transporter, putative
1421	 39.23	0	1289128..1289907	-	259	18977746	-	PF1374	-	lipoate-protein ligase a
1422	 47.32	+1	1290148..1291434	+	428	18977747	-	PF1375	-	elongation factor 1-alpha
1423	 40.13	0	1291474..1291782	+	102	18977748	rps10p	PF1376	-	30S ribosomal protein S10P
1424	 41.09	0	1291998..1292900	-	300	18977749	tfb	PF1377	-	transcription initiation factor IIB
1425	 38.02	0	1293048..1293410	+	120	18977750	-	PF1378	-	ribonuclease P protein component 2
1426	 35.39	-1	1293416..1294486	+	356	18977751	-	PF1379	-	cell division protein pelota
1427	 37.14	0	1294497..1296386	+	629	18977752	argS	PF1380	-	arginyl-tRNA synthetase
1428	 38.51	0	1296391..1296834	-	147	33359562	-	PF1381	-	hypothetical protein
1429	 41.55	0	1296839..1297909	-	356	18977754	egsA	PF1382	-	NAD(P)-dependent glycerol-1-phosphate dehydrogenase
1430	 37.69	0	1298119..1298922	+	267	18977755	-	PF1383	-	hypothetical protein
1431	 38.54	0	1298919..1299302	+	127	18977756	-	PF1384	-	hypothetical protein
1432	 37.06	-1	1299303..1299893	+	196	18977757	-	PF1385	-	DNA polymerase
1433	 40.97	0	1299938..1300657	+	239	18977758	-	PF1386	-	hypothetical protein
1434	 38.55	0	1300654..1301496	-	280	18977759	-	PF1387	-	hypothetical protein
1435	 43.29	0	1301500..1301931	-	143	18977760	-	PF1388	-	hypothetical protein
1436	 36.56	-1	1302001..1302837	+	278	18977761	-	PF1389	-	hypothetical protein
1437	 35.13	-1	1302823..1303656	-	277	18977762	-	PF1390	-	hypothetical protein
1438	 35.84	-1	1303741..1304178	-	145	18977763	-	PF1391	-	hypothetical protein
1439	 37.49	0	1304178..1306127	-	649	18977764	-	PF1392	-	hypothetical protein
1440	 41.44	0	1306311..1308209	+	632	18977765	-	PF1393	-	hypothetical protein
1441	 40.17	0	1308192..1309112	-	306	18977766	-	PF1394	-	phosphoglycerate dehydrogenase
1442	 39.14	0	1309118..1309771	-	217	18977767	-	PF1395	-	hypothetical protein
1443	 39.91	0	1309734..1310660	-	308	18977768	-	PF1396	-	2-dehydropantoate 2-reductase
1444	 39.31	0	1310700..1311770	+	356	18977769	-	PF1397	-	hypothetical protein
1445	 34.83	-1	1311772..1312575	+	267	18977770	-	PF1398	-	hypothetical protein
1446	 45.71	+1	1312763..1314580	+	605	18977771	-	PF1399	-	putative ATPase, vanadate-sensitive
1447	 38.60	0	1314625..1315365	+	246	18977772	-	PF1400	-	hypothetical protein
1448	 38.35	0	1315411..1316187	+	258	18977773	-	PF1401	-	peptidyl-prolyl cis-trans isomerase
1449	 35.12	-1	1316220..1317116	+	298	18977774	-	PF1402	-	hypothetical protein
1450	 37.11	-1	1317131..1317739	+	202	18977775	-	PF1403	-	hypothetical protein
1451	 41.22	0	1317828..1318448	+	206	18977776	-	PF1404	-	proteasome, subunit beta (multicatalytic endopeptidase complex beta subunit)
1452	 40.39	0	1318458..1320413	+	651	18977777	-	PF1405	-	cleavage and polyadenylation specifity factor protein
1453	 38.12	0	1320418..1321755	+	445	18977778	-	PF1406	-	threonine synthase
1454	 40.71	0	1321789..1322466	+	225	18977779	pyrH	PF1407	-	uridylate kinase
1455	 44.33	0	1322707..1324824	+	705	18977780	-	PF1408	-	putative dipeptide-binding protein
1456	 40.74	0	1324943..1325941	+	332	18977781	-	PF1409	-	dipeptide transport system permease protein
1457	 41.23	0	1325953..1327104	+	383	18977782	-	PF1410	-	dipeptide transport system permease protein
1458	 41.79	0	1327097..1328077	+	326	18977783	-	PF1411	-	dipeptide transport ATP-binding protein
1459	 41.92	0	1328088..1329077	+	329	18977784	-	PF1412	-	dipeptide transport ATP-binding protein
1460	 36.41	-1	1329102..1329491	+	129	18977785	-	PF1413	-	hypothetical protein
1461	 40.27	0	1329579..1330601	+	340	18977786	-	PF1414	-	flap endonuclease-1
1462	 38.32	0	1330591..1331592	-	333	18977787	-	PF1415	-	met-10+ protein
1463	 29.74	-2	1331601..1332017	-	138	18977788	-	PF1416	-	hypothetical protein
1464	 31.33	-2	1332169..1332318	-	49	33359563	-	PF1417	-	hypothetical protein
1465	 39.77	0	1332309..1333163	-	284	18977790	-	PF1418	-	hypothetical protein
1466	 38.22	0	1333376..1334071	+	231	18977791	-	PF1419	-	phosphoglycolate phosphatase
1467	 33.33	-2	1334242..1334325	+	27	18977792	-	PF1420	-	hypothetical protein
1468	 43.88	0	1334722..1336086	-	454	18977793	-	PF1421	-	4-aminobutyrate aminotransferase
1469	 39.96	0	1336194..1337264	-	356	18977794	-	PF1422	-	thioredoxin reductase
1470	 43.06	0	1337413..1337916	+	167	18977795	-	PF1423	-	putative monovalent cation/H+ antiporter subunit E
1471	 43.14	0	1337913..1338167	+	84	18977796	-	PF1424	-	putative monovalent cation/H+ antiporter subunit F
1472	 42.40	0	1338164..1338538	+	124	18977797	-	PF1425	-	putative monovalent cation/H+ antiporter subunit G
1473	 44.33	0	1338495..1338785	+	96	18977798	-	PF1426	-	hypothetical protein
1474	 44.33	0	1338782..1339081	+	99	18977799	-	PF1427	-	hypothetical protein
1475	 46.98	+1	1339074..1339520	+	148	18977800	-	PF1428	-	putative monovalent cation/H+ antiporter subunit B
1476	 40.96	0	1339517..1339870	+	117	18977801	-	PF1429	-	putative monovalent cation/H+ antiporter subunit C
1477	 43.05	0	1339867..1341399	+	510	18977802	-	PF1430	-	putative monovalent cation/H+ antiporter subunit D
1478	 40.62	0	1341392..1341748	+	118	33359564	-	PF1431	-	hypothetical protein
1479	 44.64	+1	1341753..1342256	+	167	18977804	-	PF1432	-	mbh10 NADH dehydrogenase subunit
1480	 42.53	0	1342249..1342770	+	173	18977805	-	PF1433	-	mbh11 membrane bound hydrogenase beta (NADH dehydrogenase)
1481	 43.69	0	1342767..1344050	+	427	18977806	-	PF1434	-	mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase)
1482	 42.24	0	1344053..1345018	+	321	18977807	-	PF1435	-	mbh13 NADH dehydrogenase subunit
1483	 42.38	0	1345015..1345434	+	139	18977808	-	PF1436	-	NADH-plastoquinone oxidoreductase subunit
1484	 39.39	0	1345546..1346850	+	434	18977809	-	PF1437	-	hypothetical protein
1485	 40.94	0	1346821..1348725	-	634	18977810	-	PF1438	-	hypothetical protein
1486	 39.08	0	1348779..1349126	-	115	33359565	-	PF1439	-	hypothetical protein
1487	 39.95	0	1349191..1350399	+	402	18977812	-	PF1440	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1488	 40.67	0	1350388..1351014	-	208	18977813	-	PF1441	-	NADH dehydrogenase subunit I
1489	 43.71	0	1351020..1352195	-	391	18977814	-	PF1442	-	NADH dehydrogenase subunit D
1490	 40.19	0	1352206..1352730	-	174	18977815	-	PF1443	-	NADH dehydrogenase subunit C
1491	 41.28	0	1352727..1353305	-	192	18977816	-	PF1444	-	NADH dehydrogenase subunit B
1492	 42.04	0	1353316..1354245	-	309	18977817	-	PF1445	-	NADH dehydrogenase subunit
1493	 43.24	0	1354249..1356105	-	618	18977818	-	PF1446	-	NADH dehydrogenase subunit M
1494	 43.86	0	1356102..1357583	-	493	18977819	-	PF1447	-	NADH dehydrogenase subunit N
1495	 42.61	0	1357580..1357924	-	114	18977820	-	PF1448	-	putative monovalent cation/H+ antiporter subunit C
1496	 45.75	+1	1357921..1358637	-	238	18977821	-	PF1449	-	putative monovalent cation/H+ antiporter subunit B
1497	 44.21	0	1358631..1358915	-	94	18977822	-	PF1450	-	hypothetical protein
1498	 43.73	0	1358912..1359286	-	124	18977823	-	PF1451	-	putative monovalent cation/H+ antiporter subunit G
1499	 43.14	0	1359283..1359537	-	84	18977824	-	PF1452	-	putative monovalent cation/H+ antiporter subunit F
1500	 40.63	0	1359534..1360040	-	168	18977825	-	PF1453	-	putative monovalent cation/H+ antiporter subunit E
1501	 40.63	0	1360246..1362012	+	588	18977826	-	PF1454	-	hypothetical protein
1502	 35.21	-1	1362022..1362288	+	88	18977827	-	PF1455	-	hypothetical protein
1503	 37.29	0	1362325..1362855	+	176	18977828	-	PF1456	-	hypothetical protein
1504	 38.79	0	1362930..1363259	+	109	18977829	-	PF1457	-	glutaredoxin/thioredoxin-like protein
1505	 42.20	0	1363240..1364175	-	311	18977830	-	PF1458	-	sugar kinase
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.