IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1347	 39.55	0	1226636..1227343	-	235	18977675	-	PF1303	-	hypothetical protein
1348	 38.16	0	1227353..1229839	-	828	18977676	-	PF1304	-	hypothetical protein
1349	 39.66	0	1229839..1232004	-	721	18977677	-	PF1305	-	hypothetical protein
1350	 39.52	0	1232001..1233455	-	484	18977678	-	PF1306	-	hypothetical protein
1351	 34.76	-1	1233501..1233920	-	139	18977679	-	PF1307	-	hypothetical protein
1352	 34.31	-1	1234037..1234240	+	67	18977680	-	PF1308	-	hypothetical protein
1353	 39.26	0	1234974..1235243	-	89	33359557	-	PF1308.2n	-	hypothetical protein
1354	 35.97	-1	1235031..1235333	+	100	18977681	-	PF1309	-	hypothetical protein
1355	 39.70	0	1235314..1236804	+	496	18977682	-	PF1310	-	hypothetical protein
1356	 35.33	-1	1237035..1237334	+	99	18977683	-	PF1311	-	hypothetical protein
1357	 37.29	0	1237357..1238064	+	235	18977684	-	PF1312	-	hypothetical protein
1358	 39.76	0	1238066..1238719	+	217	18977685	-	PF1313	-	DNA processing SMF protein
1359	 39.25	0	1238924..1239481	+	185	18977686	-	PF1314	-	hypothetical protein
1360	 44.90	+1	1239503..1239796	+	97	33359558	-	PF1315	-	hypothetical protein
1361	 38.29	0	1239812..1241182	+	456	18977688	-	PF1316	-	hypothetical protein
1362	 46.79	+1	1241194..1241661	+	155	18977689	-	PF1317	-	hypothetical protein
1363	 45.64	+1	1241714..1242160	+	148	18977690	-	PF1318	-	hypothetical protein
1364	 46.49	+1	1242157..1242270	+	37	18977691	-	PF1319	-	hypothetical protein
1365	 41.46	0	1242317..1242439	+	40	18977692	-	PF1320	-	hypothetical protein
1366	 49.21	+2	1242500..1242688	+	62	33359559	-	PF1320.1n	-	hypothetical protein
1367	 44.63	+1	1242886..1244292	+	468	18977693	-	PF1321	-	DEXX-box atpase
1368	 45.02	+1	1244575..1244805	+	76	18977694	-	PF1322	-	hypothetical protein
1369	 44.30	0	1244802..1245029	+	75	18977695	-	PF1323	-	hypothetical protein
1370	 40.17	0	1245494..1245976	+	160	18977696	-	PF1324	-	hypothetical protein
1371	 41.87	0	1245982..1247070	+	362	18977697	-	PF1325	-	hypothetical protein
1372	 37.92	0	1247067..1247567	-	166	18977698	-	PF1326	-	hypothetical protein
1373	 44.98	+1	1247601..1249025	-	474	18977699	-	PF1327	-	putative oxidoreductase
1374	 42.41	0	1249026..1249862	-	278	18977700	-	PF1328	-	ferredoxin--NADP(+) reductase subunit alpha
1375	 43.38	0	1250021..1251025	+	334	18977701	-	PF1329	-	H-II hydrogenase subunit beta
1376	 43.48	0	1251022..1251888	+	288	18977702	-	PF1330	-	cytochrome-c3 hydrogenase subunit gamma
1377	 43.28	0	1251888..1252601	+	237	18977703	-	PF1331	-	H-II delta (hydrogenase subunit delta)
1378	 44.79	+1	1252604..1253842	+	412	18977704	-	PF1332	-	H-II alpha (hydrogenase subunit alpha)
1379	 46.31	+1	1253839..1255194	-	451	18977705	-	PF1333	-	phosphomethylpyrimidine kinase
1380	 44.55	0	1255191..1255814	-	207	18977706	thiE	PF1334	-	thiamine-phosphate pyrophosphorylase
1381	 45.86	+1	1255811..1256608	-	265	18977707	-	PF1335	-	hydroxyethylthiazole kinase
1382	 44.82	+1	1256605..1257858	-	417	18977708	-	PF1336	-	cytosine permease
1383	 39.91	0	1257851..1258489	-	212	18977709	-	PF1337	-	transcriptional activator, putative
1384	 44.19	0	1258479..1259123	-	214	18977710	-	PF1338	-	transcriptional activator, putative
1385	 34.23	-1	1259216..1259887	-	223	18977711	-	PF1339	-	hypothetical protein
1386	 37.54	0	1259884..1260549	-	221	18977712	-	PF1340	-	hypothetical protein
1387	 43.69	0	1260646..1261842	-	398	18977713	gcvT	PF1341	-	glycine cleavage system aminomethyltransferase T
1388	 40.11	0	1261964..1262509	+	181	33359560	-	PF1342	-	hypothetical protein
1389	 42.98	0	1262501..1263547	-	348	18977715	-	PF1343	-	xaa-pro dipeptidase (proline dipeptidase)
1390	 45.29	+1	1263683..1264393	+	236	18977716	-	PF1344	-	putative maleate cis-trans isomerase
1391	 46.75	+1	1264393..1265316	+	307	18977717	-	PF1345	-	ribonuclease Z
1392	 46.44	+1	1265093..1265962	+	289	18977718	-	PF1346	-	pheromone shutdown protein
1393	 48.31	+1	1265926..1266192	-	88	18977719	-	PF1347	-	hypothetical protein
1394	 46.86	+1	1266277..1266483	-	68	18977720	-	PF1348	-	hypothetical protein
1395	 47.99	+1	1266619..1267689	+	356	18977721	-	PF1349	-	translation initiation factor IF-2B subunit beta
1396	 46.46	+1	1267796..1269082	+	428	18977722	-	PF1350	-	hypothetical protein
1397	 47.23	+1	1269025..1270902	-	625	18977723	-	PF1351	-	threonyl-tRNA synthetase
1398	 37.78	0	1270974..1271378	-	134	18977724	-	PF1352	-	hypothetical protein
1399	 35.59	-1	1271365..1271586	-	73	18977725	-	PF1353	-	hypothetical protein
1400	 35.48	-1	1271810..1273066	+	418	18977726	-	PF1354	-	putative oligosaccharide transporter
1401	 41.12	0	1273076..1274359	+	427	18977727	-	PF1355	-	NDP-sugar dehydrogenase
1402	 39.08	0	1274356..1275207	+	283	18977728	-	PF1356	-	glucose-1-phosphate uridylyltransferase
1403	 40.45	0	1275204..1276214	+	336	18977729	-	PF1357	-	UDP- or dTTP-glucose 4-epimerase or 4-6-dehydratase
1404	 38.03	0	1276215..1276448	+	77	33359561	-	PF1357.1n	-	hypothetical protein
1405	 35.09	-1	1276458..1277366	+	302	18977730	-	PF1358	-	glycosyl transferase
1406	 36.20	-1	1277390..1278295	+	301	18977731	-	PF1359	-	glycosyl transferase
1407	 36.34	-1	1278292..1279389	+	365	18977732	-	PF1360	-	hypothetical protein
1408	 33.94	-1	1279379..1280530	-	383	18977733	-	PF1361	-	glycosyl transferase
1409	 35.92	-1	1280539..1281777	-	412	18977734	-	PF1362	-	hypothetical protein
1410	 35.50	-1	1281755..1282723	-	322	18977735	-	PF1363	-	glycosyl transferase
1411	 36.99	-1	1282720..1283841	-	373	18977736	-	PF1364	-	hypothetical protein
1412	 39.46	0	1283829..1284269	+	146	18977737	-	PF1365	-	hypothetical protein
1413	 44.62	0	1284317..1285096	-	259	18977738	-	PF1366	-	transposase
1414	 44.27	0	1285169..1285543	+	124	18977739	rpl7ae	PF1367	-	50S ribosomal protein L7Ae
1415	 46.30	+1	1285590..1285805	+	71	18977740	rps28e	PF1368	-	30S ribosomal protein S28e
1416	 47.26	+1	1285811..1286011	+	66	18977741	-	PF1369	-	50S ribosomal protein L24e
1417	 35.87	-1	1286152..1286427	+	91	18977742	-	PF1370	-	hypothetical protein
1418	 37.55	0	1286462..1287292	+	276	18977743	-	PF1371	-	hypothetical protein
1419	 36.75	-1	1287799..1288032	+	77	18977744	-	PF1372	-	hypothetical protein
1420	 37.88	0	1288269..1289126	+	285	18977745	-	PF1373	-	cation transporter, putative
1421	 39.23	0	1289128..1289907	-	259	18977746	-	PF1374	-	lipoate-protein ligase a
1422	 47.32	+1	1290148..1291434	+	428	18977747	-	PF1375	-	elongation factor 1-alpha
1423	 40.13	0	1291474..1291782	+	102	18977748	rps10p	PF1376	-	30S ribosomal protein S10P
1424	 41.09	0	1291998..1292900	-	300	18977749	tfb	PF1377	-	transcription initiation factor IIB
1425	 38.02	0	1293048..1293410	+	120	18977750	-	PF1378	-	ribonuclease P protein component 2
1426	 35.39	-1	1293416..1294486	+	356	18977751	-	PF1379	-	cell division protein pelota
1427	 37.14	0	1294497..1296386	+	629	18977752	argS	PF1380	-	arginyl-tRNA synthetase
1428	 38.51	0	1296391..1296834	-	147	33359562	-	PF1381	-	hypothetical protein
1429	 41.55	0	1296839..1297909	-	356	18977754	egsA	PF1382	-	NAD(P)-dependent glycerol-1-phosphate dehydrogenase
1430	 37.69	0	1298119..1298922	+	267	18977755	-	PF1383	-	hypothetical protein
1431	 38.54	0	1298919..1299302	+	127	18977756	-	PF1384	-	hypothetical protein
1432	 37.06	-1	1299303..1299893	+	196	18977757	-	PF1385	-	DNA polymerase
1433	 40.97	0	1299938..1300657	+	239	18977758	-	PF1386	-	hypothetical protein
1434	 38.55	0	1300654..1301496	-	280	18977759	-	PF1387	-	hypothetical protein
1435	 43.29	0	1301500..1301931	-	143	18977760	-	PF1388	-	hypothetical protein
1436	 36.56	-1	1302001..1302837	+	278	18977761	-	PF1389	-	hypothetical protein
1437	 35.13	-1	1302823..1303656	-	277	18977762	-	PF1390	-	hypothetical protein
1438	 35.84	-1	1303741..1304178	-	145	18977763	-	PF1391	-	hypothetical protein
1439	 37.49	0	1304178..1306127	-	649	18977764	-	PF1392	-	hypothetical protein
1440	 41.44	0	1306311..1308209	+	632	18977765	-	PF1393	-	hypothetical protein
1441	 40.17	0	1308192..1309112	-	306	18977766	-	PF1394	-	phosphoglycerate dehydrogenase
1442	 39.14	0	1309118..1309771	-	217	18977767	-	PF1395	-	hypothetical protein
1443	 39.91	0	1309734..1310660	-	308	18977768	-	PF1396	-	2-dehydropantoate 2-reductase
1444	 39.31	0	1310700..1311770	+	356	18977769	-	PF1397	-	hypothetical protein
1445	 34.83	-1	1311772..1312575	+	267	18977770	-	PF1398	-	hypothetical protein
1446	 45.71	+1	1312763..1314580	+	605	18977771	-	PF1399	-	putative ATPase, vanadate-sensitive
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.