IslandPathversion 1.0

IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.88 STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1317	 40.94	0	1205343..1206026	+	227	18977645	-	PF1273	-	hypothetical protein
1318	 43.13	0	1206019..1207008	+	329	18977646	-	PF1274	-	urea amidolyase
1319	 44.01	0	1207044..1207352	+	102	18977647	-	PF1275	-	hypothetical protein
1320	 36.88	-1	1207349..1207630	-	93	18977648	-	PF1276	-	hypothetical protein
1321	 41.05	0	1207631..1208395	-	254	18977649	-	PF1277	-	hypothetical protein
1322	 40.00	0	1208389..1208733	-	114	18977650	-	PF1278	-	hypothetical protein
1323	 45.42	+1	1208774..1209319	-	181	18977651	rpl10e	PF1279	-	50S ribosomal protein L10e
1324	 43.43	0	1209542..1209937	+	131	18977652	-	PF1280	-	hypothetical protein
1325	 44.00	0	1210188..1210562	-	124	18977653	-	PF1281	-	superoxide reductase
1326	 40.61	0	1210573..1210737	-	54	18977654	-	PF1282	-	rubredoxin
1327	 42.05	0	1210814..1211329	-	171	18977655	-	PF1283	-	rubrerythrin
1328	 46.15	+1	1211434..1211628	-	64	33359556	-	PF1284	-	hypothetical protein
1329	 38.74	0	1211743..1212834	-	363	18977657	-	PF1285	-	hypothetical protein
1330	 38.10	0	1212834..1214261	-	475	18977658	-	PF1286	-	hypothetical protein
1331	 37.84	0	1214251..1214982	-	243	18977659	-	PF1287	-	putative ABC transporter
1332	 35.71	-1	1215072..1216163	-	363	18977660	-	PF1288	-	putative thiamin biosynthesis protein thiI
1333	 38.73	0	1216166..1217128	-	320	18977661	-	PF1289	-	molybdopterin biosynthesis protein moeb
1334	 39.30	0	1217218..1217787	+	189	18977662	-	PF1290	-	hypothetical protein
1335	 42.82	0	1217850..1218608	+	252	18977663	-	PF1291	-	hypothetical protein
1336	 38.52	0	1218577..1219869	-	430	18977664	-	PF1292	-	hypothetical protein
1337	 45.07	+1	1219937..1221376	+	479	18977665	-	PF1293	-	prolyl-tRNA synthetase
1338	 41.35	0	1221392..1221952	+	186	18977666	-	PF1294	-	hypothetical protein
1339	 44.10	0	1222001..1222576	+	191	18977667	-	PF1295	-	transcription factor
1340	 41.82	0	1222581..1223405	+	274	18977668	-	PF1296	-	dihydropteroate synthase
1341	 42.55	0	1223395..1223817	-	140	18977669	-	PF1297	-	hypothetical protein
1342	 40.39	0	1223841..1224350	-	169	18977670	-	PF1298	-	putative endonuclease
1343	 45.30	+1	1224347..1224973	-	208	18977671	-	PF1299	-	pyrrolidone-carboxylate peptidase
1344	 37.25	0	1224970..1225224	-	84	18977672	-	PF1300	-	hypothetical protein
1345	 39.30	0	1225224..1225910	-	228	18977673	-	PF1301	-	hypothetical protein
1346	 42.79	0	1226160..1226603	-	147	18977674	-	PF1302	-	hypothetical protein
1347	 39.55	0	1226636..1227343	-	235	18977675	-	PF1303	-	hypothetical protein
1348	 38.16	0	1227353..1229839	-	828	18977676	-	PF1304	-	hypothetical protein
1349	 39.66	0	1229839..1232004	-	721	18977677	-	PF1305	-	hypothetical protein
1350	 39.52	0	1232001..1233455	-	484	18977678	-	PF1306	-	hypothetical protein
1351	 34.76	-1	1233501..1233920	-	139	18977679	-	PF1307	-	hypothetical protein
1352	 34.31	-1	1234037..1234240	+	67	18977680	-	PF1308	-	hypothetical protein
1353	 39.26	0	1234974..1235243	-	89	33359557	-	PF1308.2n	-	hypothetical protein
1354	 35.97	-1	1235031..1235333	+	100	18977681	-	PF1309	-	hypothetical protein
1355	 39.70	0	1235314..1236804	+	496	18977682	-	PF1310	-	hypothetical protein
1356	 35.33	-1	1237035..1237334	+	99	18977683	-	PF1311	-	hypothetical protein
1357	 37.29	0	1237357..1238064	+	235	18977684	-	PF1312	-	hypothetical protein
1358	 39.76	0	1238066..1238719	+	217	18977685	-	PF1313	-	DNA processing SMF protein
1359	 39.25	0	1238924..1239481	+	185	18977686	-	PF1314	-	hypothetical protein
1360	 44.90	+1	1239503..1239796	+	97	33359558	-	PF1315	-	hypothetical protein
1361	 38.29	0	1239812..1241182	+	456	18977688	-	PF1316	-	hypothetical protein
1362	 46.79	+1	1241194..1241661	+	155	18977689	-	PF1317	-	hypothetical protein
1363	 45.64	+1	1241714..1242160	+	148	18977690	-	PF1318	-	hypothetical protein
1364	 46.49	+1	1242157..1242270	+	37	18977691	-	PF1319	-	hypothetical protein
1365	 41.46	0	1242317..1242439	+	40	18977692	-	PF1320	-	hypothetical protein
1366	 49.21	+2	1242500..1242688	+	62	33359559	-	PF1320.1n	-	hypothetical protein
1367	 44.63	+1	1242886..1244292	+	468	18977693	-	PF1321	-	DEXX-box atpase
1368	 45.02	+1	1244575..1244805	+	76	18977694	-	PF1322	-	hypothetical protein
1369	 44.30	0	1244802..1245029	+	75	18977695	-	PF1323	-	hypothetical protein
1370	 40.17	0	1245494..1245976	+	160	18977696	-	PF1324	-	hypothetical protein
1371	 41.87	0	1245982..1247070	+	362	18977697	-	PF1325	-	hypothetical protein
1372	 37.92	0	1247067..1247567	-	166	18977698	-	PF1326	-	hypothetical protein
1373	 44.98	+1	1247601..1249025	-	474	18977699	-	PF1327	-	putative oxidoreductase
1374	 42.41	0	1249026..1249862	-	278	18977700	-	PF1328	-	ferredoxin--NADP(+) reductase subunit alpha
1375	 43.38	0	1250021..1251025	+	334	18977701	-	PF1329	-	H-II hydrogenase subunit beta
1376	 43.48	0	1251022..1251888	+	288	18977702	-	PF1330	-	cytochrome-c3 hydrogenase subunit gamma
1377	 43.28	0	1251888..1252601	+	237	18977703	-	PF1331	-	H-II delta (hydrogenase subunit delta)
1378	 44.79	+1	1252604..1253842	+	412	18977704	-	PF1332	-	H-II alpha (hydrogenase subunit alpha)
1379	 46.31	+1	1253839..1255194	-	451	18977705	-	PF1333	-	phosphomethylpyrimidine kinase
1380	 44.55	0	1255191..1255814	-	207	18977706	thiE	PF1334	-	thiamine-phosphate pyrophosphorylase
1381	 45.86	+1	1255811..1256608	-	265	18977707	-	PF1335	-	hydroxyethylthiazole kinase
1382	 44.82	+1	1256605..1257858	-	417	18977708	-	PF1336	-	cytosine permease
1383	 39.91	0	1257851..1258489	-	212	18977709	-	PF1337	-	transcriptional activator, putative
1384	 44.19	0	1258479..1259123	-	214	18977710	-	PF1338	-	transcriptional activator, putative
1385	 34.23	-1	1259216..1259887	-	223	18977711	-	PF1339	-	hypothetical protein
1386	 37.54	0	1259884..1260549	-	221	18977712	-	PF1340	-	hypothetical protein
1387	 43.69	0	1260646..1261842	-	398	18977713	gcvT	PF1341	-	glycine cleavage system aminomethyltransferase T
1388	 40.11	0	1261964..1262509	+	181	33359560	-	PF1342	-	hypothetical protein
1389	 42.98	0	1262501..1263547	-	348	18977715	-	PF1343	-	xaa-pro dipeptidase (proline dipeptidase)
1390	 45.29	+1	1263683..1264393	+	236	18977716	-	PF1344	-	putative maleate cis-trans isomerase
1391	 46.75	+1	1264393..1265316	+	307	18977717	-	PF1345	-	ribonuclease Z
1392	 46.44	+1	1265093..1265962	+	289	18977718	-	PF1346	-	pheromone shutdown protein
1393	 48.31	+1	1265926..1266192	-	88	18977719	-	PF1347	-	hypothetical protein
1394	 46.86	+1	1266277..1266483	-	68	18977720	-	PF1348	-	hypothetical protein
1395	 47.99	+1	1266619..1267689	+	356	18977721	-	PF1349	-	translation initiation factor IF-2B subunit beta
1396	 46.46	+1	1267796..1269082	+	428	18977722	-	PF1350	-	hypothetical protein
1397	 47.23	+1	1269025..1270902	-	625	18977723	-	PF1351	-	threonyl-tRNA synthetase
1398	 37.78	0	1270974..1271378	-	134	18977724	-	PF1352	-	hypothetical protein
1399	 35.59	-1	1271365..1271586	-	73	18977725	-	PF1353	-	hypothetical protein
1400	 35.48	-1	1271810..1273066	+	418	18977726	-	PF1354	-	putative oligosaccharide transporter
1401	 41.12	0	1273076..1274359	+	427	18977727	-	PF1355	-	NDP-sugar dehydrogenase
1402	 39.08	0	1274356..1275207	+	283	18977728	-	PF1356	-	glucose-1-phosphate uridylyltransferase
1403	 40.45	0	1275204..1276214	+	336	18977729	-	PF1357	-	UDP- or dTTP-glucose 4-epimerase or 4-6-dehydratase
1404	 38.03	0	1276215..1276448	+	77	33359561	-	PF1357.1n	-	hypothetical protein
1405	 35.09	-1	1276458..1277366	+	302	18977730	-	PF1358	-	glycosyl transferase
1406	 36.20	-1	1277390..1278295	+	301	18977731	-	PF1359	-	glycosyl transferase
1407	 36.34	-1	1278292..1279389	+	365	18977732	-	PF1360	-	hypothetical protein
1408	 33.94	-1	1279379..1280530	-	383	18977733	-	PF1361	-	glycosyl transferase
1409	 35.92	-1	1280539..1281777	-	412	18977734	-	PF1362	-	hypothetical protein
1410	 35.50	-1	1281755..1282723	-	322	18977735	-	PF1363	-	glycosyl transferase
1411	 36.99	-1	1282720..1283841	-	373	18977736	-	PF1364	-	hypothetical protein
1412	 39.46	0	1283829..1284269	+	146	18977737	-	PF1365	-	hypothetical protein
1413	 44.62	0	1284317..1285096	-	259	18977738	-	PF1366	-	transposase
1414	 44.27	0	1285169..1285543	+	124	18977739	rpl7ae	PF1367	-	50S ribosomal protein L7Ae
1415	 46.30	+1	1285590..1285805	+	71	18977740	rps28e	PF1368	-	30S ribosomal protein S28e
1416	 47.26	+1	1285811..1286011	+	66	18977741	-	PF1369	-	50S ribosomal protein L24e
40.88	MEAN

3.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.