IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1284	 40.49	0	1175104..1175802	+	232	18977613	upp	PF1241	-	uracil phosphoribosyltransferase
1285	 39.67	0	1175771..1177696	-	641	18977614	-	PF1242	-	dehydrogenase subunit alpha
1286	 33.68	-1	1177712..1177999	-	95	18977615	-	PF1243	-	hypothetical protein
1287	 38.01	0	1178002..1178322	-	106	18977616	-	PF1244	-	hypothetical protein
1288	 41.92	0	1178445..1179923	+	492	18977617	-	PF1245	-	d-nopaline dehydrogenase
1289	 40.64	0	1179929..1181077	+	382	18977618	-	PF1246	-	sarcosine oxidase, subunit beta
1290	 37.64	0	1181229..1182179	+	316	18977619	-	PF1247	-	hypothetical protein
1291	 44.15	0	1182150..1183021	-	290	33359553	-	PF1248	-	transposase
1292	 42.48	0	1182566..1183024	-	152	33359554	-	PF1247.1n	-	hypothetical protein
1293	 37.43	0	1183142..1184068	+	308	18977621	-	PF1249	-	putative ABC transporter
1294	 35.91	-1	1184065..1184685	+	206	18977622	-	PF1250	-	hypothetical protein
1295	 40.45	0	1185029..1186264	+	411	18977623	-	PF1251	-	hypothetical protein
1296	 39.29	0	1186268..1187257	+	329	18977624	-	PF1252	-	hypothetical protein
1297	 42.05	0	1187250..1188419	-	389	18977625	-	PF1253	-	aspartate aminotransferase
1298	 43.06	0	1188413..1190149	+	578	18977626	-	PF1254	-	putative sodium dependent transporter
1299	 44.44	0	1190160..1190258	+	32	18977627	-	PF1255	-	hypothetical protein
1300	 38.50	0	1190306..1191040	+	244	18977628	-	PF1256	-	hypothetical protein
1301	 40.51	0	1191037..1191969	-	310	18977629	-	PF1257	-	nol1-nop2-sun family nucleolar protein III
1302	 40.29	0	1191971..1192660	-	229	18977630	-	PF1258	-	ribose-5-phosphate isomerase A
1303	 38.01	0	1192664..1192984	-	106	18977631	-	PF1259	-	hypothetical protein
1304	 38.03	0	1193034..1193948	-	304	18977632	-	PF1260	-	hypothetical protein
1305	 35.60	-1	1193950..1194522	-	190	18977633	-	PF1261	-	hypothetical protein
1306	 35.73	-1	1194449..1195240	+	263	18977634	-	PF1262	-	ribosome biogenesis protein
1307	 37.41	0	1195302..1196675	+	457	18977635	-	PF1263	-	hypothetical protein
1308	 39.81	0	1196737..1197153	+	138	18977636	-	PF1264	-	translation initiation factor IF-5A
1309	 38.06	0	1197174..1198526	-	450	18977637	-	PF1265	-	nol1-nop2-sun family nucleolar protein II
1310	 40.51	0	1198668..1199768	+	366	18977638	-	PF1266	-	cystathionine gamma-synthase
1311	 40.71	0	1199777..1200793	+	338	18977639	-	PF1267	-	hypothetical protein
1312	 40.22	0	1200806..1201735	+	309	18977640	-	PF1268	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1313	 39.43	0	1201737..1202753	+	338	18977641	-	PF1269	-	methionine synthase
1314	 37.44	0	1202750..1203649	-	299	33359555	-	PF1270	-	hypothetical protein
1315	 38.46	0	1203884..1204195	-	103	18977643	-	PF1271	-	hypothetical protein
1316	 41.54	0	1204579..1205346	+	255	18977644	-	PF1272	-	hypothetical protein
1317	 40.94	0	1205343..1206026	+	227	18977645	-	PF1273	-	hypothetical protein
1318	 43.13	0	1206019..1207008	+	329	18977646	-	PF1274	-	urea amidolyase
1319	 44.01	0	1207044..1207352	+	102	18977647	-	PF1275	-	hypothetical protein
1320	 36.88	-1	1207349..1207630	-	93	18977648	-	PF1276	-	hypothetical protein
1321	 41.05	0	1207631..1208395	-	254	18977649	-	PF1277	-	hypothetical protein
1322	 40.00	0	1208389..1208733	-	114	18977650	-	PF1278	-	hypothetical protein
1323	 45.42	+1	1208774..1209319	-	181	18977651	rpl10e	PF1279	-	50S ribosomal protein L10e
1324	 43.43	0	1209542..1209937	+	131	18977652	-	PF1280	-	hypothetical protein
1325	 44.00	0	1210188..1210562	-	124	18977653	-	PF1281	-	superoxide reductase
1326	 40.61	0	1210573..1210737	-	54	18977654	-	PF1282	-	rubredoxin
1327	 42.05	0	1210814..1211329	-	171	18977655	-	PF1283	-	rubrerythrin
1328	 46.15	+1	1211434..1211628	-	64	33359556	-	PF1284	-	hypothetical protein
1329	 38.74	0	1211743..1212834	-	363	18977657	-	PF1285	-	hypothetical protein
1330	 38.10	0	1212834..1214261	-	475	18977658	-	PF1286	-	hypothetical protein
1331	 37.84	0	1214251..1214982	-	243	18977659	-	PF1287	-	putative ABC transporter
1332	 35.71	-1	1215072..1216163	-	363	18977660	-	PF1288	-	putative thiamin biosynthesis protein thiI
1333	 38.73	0	1216166..1217128	-	320	18977661	-	PF1289	-	molybdopterin biosynthesis protein moeb
1334	 39.30	0	1217218..1217787	+	189	18977662	-	PF1290	-	hypothetical protein
1335	 42.82	0	1217850..1218608	+	252	18977663	-	PF1291	-	hypothetical protein
1336	 38.52	0	1218577..1219869	-	430	18977664	-	PF1292	-	hypothetical protein
1337	 45.07	+1	1219937..1221376	+	479	18977665	-	PF1293	-	prolyl-tRNA synthetase
1338	 41.35	0	1221392..1221952	+	186	18977666	-	PF1294	-	hypothetical protein
1339	 44.10	0	1222001..1222576	+	191	18977667	-	PF1295	-	transcription factor
1340	 41.82	0	1222581..1223405	+	274	18977668	-	PF1296	-	dihydropteroate synthase
1341	 42.55	0	1223395..1223817	-	140	18977669	-	PF1297	-	hypothetical protein
1342	 40.39	0	1223841..1224350	-	169	18977670	-	PF1298	-	putative endonuclease
1343	 45.30	+1	1224347..1224973	-	208	18977671	-	PF1299	-	pyrrolidone-carboxylate peptidase
1344	 37.25	0	1224970..1225224	-	84	18977672	-	PF1300	-	hypothetical protein
1345	 39.30	0	1225224..1225910	-	228	18977673	-	PF1301	-	hypothetical protein
1346	 42.79	0	1226160..1226603	-	147	18977674	-	PF1302	-	hypothetical protein
1347	 39.55	0	1226636..1227343	-	235	18977675	-	PF1303	-	hypothetical protein
1348	 38.16	0	1227353..1229839	-	828	18977676	-	PF1304	-	hypothetical protein
1349	 39.66	0	1229839..1232004	-	721	18977677	-	PF1305	-	hypothetical protein
1350	 39.52	0	1232001..1233455	-	484	18977678	-	PF1306	-	hypothetical protein
1351	 34.76	-1	1233501..1233920	-	139	18977679	-	PF1307	-	hypothetical protein
1352	 34.31	-1	1234037..1234240	+	67	18977680	-	PF1308	-	hypothetical protein
1353	 39.26	0	1234974..1235243	-	89	33359557	-	PF1308.2n	-	hypothetical protein
1354	 35.97	-1	1235031..1235333	+	100	18977681	-	PF1309	-	hypothetical protein
1355	 39.70	0	1235314..1236804	+	496	18977682	-	PF1310	-	hypothetical protein
1356	 35.33	-1	1237035..1237334	+	99	18977683	-	PF1311	-	hypothetical protein
1357	 37.29	0	1237357..1238064	+	235	18977684	-	PF1312	-	hypothetical protein
1358	 39.76	0	1238066..1238719	+	217	18977685	-	PF1313	-	DNA processing SMF protein
1359	 39.25	0	1238924..1239481	+	185	18977686	-	PF1314	-	hypothetical protein
1360	 44.90	+1	1239503..1239796	+	97	33359558	-	PF1315	-	hypothetical protein
1361	 38.29	0	1239812..1241182	+	456	18977688	-	PF1316	-	hypothetical protein
1362	 46.79	+1	1241194..1241661	+	155	18977689	-	PF1317	-	hypothetical protein
1363	 45.64	+1	1241714..1242160	+	148	18977690	-	PF1318	-	hypothetical protein
1364	 46.49	+1	1242157..1242270	+	37	18977691	-	PF1319	-	hypothetical protein
1365	 41.46	0	1242317..1242439	+	40	18977692	-	PF1320	-	hypothetical protein
1366	 49.21	+2	1242500..1242688	+	62	33359559	-	PF1320.1n	-	hypothetical protein
1367	 44.63	+1	1242886..1244292	+	468	18977693	-	PF1321	-	DEXX-box atpase
1368	 45.02	+1	1244575..1244805	+	76	18977694	-	PF1322	-	hypothetical protein
1369	 44.30	0	1244802..1245029	+	75	18977695	-	PF1323	-	hypothetical protein
1370	 40.17	0	1245494..1245976	+	160	18977696	-	PF1324	-	hypothetical protein
1371	 41.87	0	1245982..1247070	+	362	18977697	-	PF1325	-	hypothetical protein
1372	 37.92	0	1247067..1247567	-	166	18977698	-	PF1326	-	hypothetical protein
1373	 44.98	+1	1247601..1249025	-	474	18977699	-	PF1327	-	putative oxidoreductase
1374	 42.41	0	1249026..1249862	-	278	18977700	-	PF1328	-	ferredoxin--NADP(+) reductase subunit alpha
1375	 43.38	0	1250021..1251025	+	334	18977701	-	PF1329	-	H-II hydrogenase subunit beta
1376	 43.48	0	1251022..1251888	+	288	18977702	-	PF1330	-	cytochrome-c3 hydrogenase subunit gamma
1377	 43.28	0	1251888..1252601	+	237	18977703	-	PF1331	-	H-II delta (hydrogenase subunit delta)
1378	 44.79	+1	1252604..1253842	+	412	18977704	-	PF1332	-	H-II alpha (hydrogenase subunit alpha)
1379	 46.31	+1	1253839..1255194	-	451	18977705	-	PF1333	-	phosphomethylpyrimidine kinase
1380	 44.55	0	1255191..1255814	-	207	18977706	thiE	PF1334	-	thiamine-phosphate pyrophosphorylase
1381	 45.86	+1	1255811..1256608	-	265	18977707	-	PF1335	-	hydroxyethylthiazole kinase
1382	 44.82	+1	1256605..1257858	-	417	18977708	-	PF1336	-	cytosine permease
1383	 39.91	0	1257851..1258489	-	212	18977709	-	PF1337	-	transcriptional activator, putative
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.