IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
85	 39.09	0	89099..92935	-	1278	18976457	-	PF0085	-	putative DNA helicase
86	 43.26	0	92940..93584	-	214	18976458	-	PF0086	-	partial alanyl-tRNA synthetase matches COOH terminus
87	 39.51	0	93646..94050	+	134	18976459	-	PF0087	-	inosine-5'-monophosphate dehydrogenase related protein IV
88	 39.71	0	94057..95562	+	501	18976460	-	PF0088	-	icc related protein
89	 40.02	0	95567..96568	+	333	18976461	-	PF0089	-	met-10+ protein
90	 39.72	0	96627..97550	+	307	18976462	moaA	PF0090	-	molybdenum cofactor biosynthesis protein A
91	 38.20	0	97598..98419	+	273	18976463	-	PF0091	-	hypothetical protein
92	 41.88	0	98420..99859	-	479	18976464	-	PF0092	-	replication factor C large subunit
93	 41.15	0	99866..102424	-	852	18976465	-	PF0093	-	replication factor C small subunit
94	 41.70	0	102519..103199	-	226	18976466	-	PF0094	-	glutaredoxin-like protein
95	 35.88	-1	103323..104030	+	235	33359448	-	PF0095	-	hypothetical protein
96	 42.80	0	103966..104208	+	80	18976468	-	PF0096	-	hypothetical protein
97	 41.37	0	104205..105386	+	393	18976469	-	PF0097	-	43 kDa subunit bacteriochlorophyll synthase-like protein
98	 39.53	0	105370..106143	-	257	18976470	nadE	PF0098	-	NAD synthetase
99	 36.17	-1	106140..107090	-	316	18976471	-	PF0099	-	hypothetical protein
100	 39.73	0	107145..107582	+	145	18976472	-	PF0100	-	molybdopterin converting factor subunit 2
101	 36.48	-1	107607..108590	+	327	18976473	-	PF0101	-	hypothetical protein
102	 37.48	0	108722..109468	+	248	18976474	-	PF0102	-	hypothetical protein
103	 34.98	-1	109478..109963	+	161	18976475	-	PF0103	-	hypothetical protein
104	 35.67	-1	109944..110243	+	99	18976476	-	PF0104	-	hypothetical protein
105	 38.18	0	110283..111437	+	384	18976477	-	PF0105	-	hypothetical protein
106	 39.75	0	111416..112537	+	373	18976478	-	PF0106	-	hypothetical protein
107	 42.01	0	112570..113157	+	195	18976479	-	PF0107	-	hypothetical protein
108	 43.51	0	113144..113713	+	189	18976480	-	PF0108	-	L-fuculose phosphate aldolase
109	 38.18	0	114043..114888	-	281	18976481	-	PF0109	-	hypothetical protein
110	 40.71	0	114881..115924	-	347	18976482	-	PF0110	-	DNA primase small subunit
111	 39.15	0	115875..117128	-	417	33359449	-	PF0111	-	DNA primase large subunit
112	 38.12	0	117115..118179	+	354	18976484	-	PF0112	-	hypothetical protein
113	 39.32	0	118242..118709	+	155	18976485	-	PF0113	-	hypothetical protein
114	 37.17	0	118681..119253	-	190	18976486	-	PF0114	-	GTP-binding protein
115	 41.65	0	119316..120506	-	396	18976487	-	PF0115	-	proteasome-activating nucleotidase
116	 39.91	0	120590..121684	-	364	18976488	-	PF0116	-	putative multiple sugar transport protein
117	 39.89	0	121696..122565	-	289	18976489	-	PF0117	-	putative sugar transport protein
118	 37.45	0	122562..123509	-	315	18976490	-	PF0118	-	putative ABC transporter permease protein
119	 42.31	0	123510..125135	-	541	18976491	-	PF0119	-	putative perplasmic sugar binding protein
120	 41.16	0	125631..126665	+	344	18976492	-	PF0120	-	hypothetical protein
121	 40.98	0	126676..127917	-	413	18976493	-	PF0121	-	putative aspartate aminotransferase
122	 38.82	0	128228..129193	-	321	18976494	-	PF0122	-	translation initiation factor IF-2B subunit delta
123	 37.34	0	129190..129588	-	132	18976495	-	PF0123	-	hypothetical protein
124	 36.65	-1	129706..130731	+	341	18976496	-	PF0124	-	hypothetical protein
125	 39.74	0	130715..130948	-	77	18976497	-	PF0125	-	hypothetical protein
126	 37.98	0	131060..132394	+	444	18976498	-	PF0126	-	DNA repair protein rad25
127	 39.48	0	132382..133227	-	281	18976499	speE	PF0127	-	spermidine synthase
128	 38.00	0	133314..134513	+	399	18976500	-	PF0128	-	hypothetical protein
129	 40.94	0	134510..135022	+	170	18976501	-	PF0129	-	hypothetical protein
130	 39.51	0	135009..135623	-	204	33359450	-	PF0130	-	hypothetical protein
131	 37.57	0	135637..136581	+	314	18976503	-	PF0131	-	hypothetical protein
132	 64.85	+2	138821..139534	-	237	33359451	-	PF0131.1n	-	hypothetical protein
133	 64.66	+2	140179..140877	-	232	33359452	-	PF0131.2n	-	hypothetical protein
134	 61.58	+2	141213..141389	+	58	33359453	-	PF0131.3n	-	hypothetical protein
135	 44.01	0	141849..143318	+	489	33359454	-	PF0132	-	hypothetical protein
136	 41.84	0	143315..143890	+	191	33359455	-	PF0133	-	hypothetical protein
137	 41.71	0	143884..144492	-	202	18976506	-	PF0134	-	hypothetical protein
138	 42.56	0	144607..146178	+	523	18976507	lysK	PF0135	-	lysyl-tRNA synthetase
139	 39.98	0	146184..147086	+	300	18976508	-	PF0136	-	hypothetical protein
140	 36.97	-1	147057..147743	-	228	18976509	-	PF0137	-	putative methyltransferase
141	 36.63	-1	147810..148781	+	323	18976510	-	PF0138	-	hypothetical protein
142	 41.67	0	148852..149451	+	199	18976511	-	PF0139	-	indolepyruvate oxidoreductase subunit B
143	 39.43	0	149426..150589	-	387	18976512	-	PF0140	-	putative sugar transporter protein
144	 35.95	-1	150678..151595	+	305	18976513	-	PF0141	-	hypothetical protein
145	 43.65	0	151648..152568	+	306	18976514	-	PF0142	-	asparaginase
146	 40.72	0	152568..153731	+	387	18976515	-	PF0143	-	quinolone resistance protein norA - like protein
147	 40.75	0	153721..154650	+	309	18976516	-	PF0144	-	hypothetical protein
148	 39.84	0	154652..155266	+	204	18976517	-	PF0145	-	hypothetical protein
149	 39.59	0	155263..155853	-	196	18976518	-	PF0146	-	potassium channel, putative
150	 38.35	0	155840..156457	-	205	18976519	-	PF0147	-	potassium channel related protein
151	 38.74	0	156649..157221	-	190	18976520	-	PF0148	-	hypothetical protein
152	 41.67	0	157236..158027	-	263	18976521	-	PF0149	-	short chain dehydrogenase
153	 36.91	-1	158092..158706	+	204	18976522	-	PF0150	-	hypothetical protein
154	 38.26	0	158703..159494	+	263	18976523	-	PF0151	-	hypothetical protein
155	 40.91	0	159491..160150	-	219	18976524	-	PF0152	-	hypothetical protein
156	 36.88	-1	160186..160890	-	234	18976525	-	PF0153	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
157	 40.59	0	160961..162310	+	449	18976526	-	PF0154	-	amidophosphoribosyltransferase
158	 43.46	0	162480..163793	-	437	18976527	asnC	PF0155	-	asparaginyl-tRNA synthetase
159	 40.77	0	164091..166994	-	967	18976528	-	PF0156	-	oligosaccharyl transferase stt3 subunit related protein
160	 40.85	0	167010..168806	-	598	18976529	-	PF0157	-	D-fructose-6-phosphate amidotransferase
161	 39.24	0	168884..169933	-	349	18976530	-	PF0158	-	hypothetical protein
162	 43.82	0	169930..170520	-	196	18976531	-	PF0159	-	multicatalytic endopeptidase complex beta subunit
163	 39.52	0	170595..171968	+	457	18976532	-	PF0160	-	TLDD - like protein
164	 38.24	0	171965..173227	+	420	18976533	-	PF0161	-	hypothetical protein
165	 35.45	-1	173278..173844	+	188	18976534	-	PF0162	-	hypothetical protein
166	 39.00	0	173847..174623	-	258	18976535	-	PF0163	-	hypothetical protein
167	 42.37	0	174556..175761	+	401	18976536	-	PF0164	-	nifS protein
168	 41.13	0	175745..176437	-	230	18976537	-	PF0165	-	hydrolase related to 2-haloalkanoic acid dehalogenase
169	 42.58	0	176434..176952	-	172	18976538	-	PF0166	-	oxidoreductase
170	 41.44	0	176949..178058	-	369	18976539	-	PF0167	-	metalloprotease
171	 39.68	0	178150..178653	+	167	18976540	-	PF0168	-	hypothetical protein
172	 40.31	0	178650..179810	+	386	18976541	-	PF0169	-	nol1-nop2-sun family nucleolar protein III
173	 38.44	0	179807..180805	+	332	18976542	-	PF0170	-	hypothetical protein
174	 37.60	0	180802..181317	-	171	18976543	-	PF0171	-	hypothetical protein
175	 43.49	0	181525..182499	-	324	18976544	-	PF0172	-	O-sialoglycoprotein endopeptidase
176	 39.51	0	182599..183489	+	296	18976545	-	PF0173	-	preprotein translocase subunit SecF
177	 39.39	0	183486..185003	+	505	18976546	secD	PF0174	-	preprotein translocase subunit SecD
178	 38.67	0	185009..185701	+	230	18976547	-	PF0175	-	trk system potassium uptake - like protein
179	 37.00	-1	185779..186105	+	108	33359456	-	PF0176	-	V-type ATP synthase subunit H
180	 39.16	0	186107..188098	+	663	18976549	-	PF0177	-	V-type ATP synthase subunit I
181	 44.17	0	188100..188579	+	159	18976550	-	PF0178	-	V-type ATP synthase subunit K
182	 37.91	0	188599..189210	+	203	33359457	-	PF0179	-	V-type ATP synthase subunit E
183	 36.57	-1	189217..190329	+	370	18976552	-	PF0180	-	V-type ATP synthase subunit C
184	 40.38	0	190326..190637	+	103	18976553	-	PF0181	-	V-type ATP synthase subunit F
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.