IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1229	 40.73	0	1134061..1135494	+	477	18977560	-	PF1188	-	pyruvate kinase
1230	 38.58	0	1135505..1135828	+	107	18977561	-	PF1189	-	hypothetical protein
1231	 40.19	0	1135866..1136390	+	174	18977562	-	PF1190	-	hypothetical protein
1232	 38.93	0	1136394..1137179	-	261	18977563	-	PF1191	-	hypothetical protein
1233	 39.18	0	1137142..1137432	-	96	18977564	-	PF1192	-	hypothetical protein
1234	 41.76	0	1137512..1138069	-	185	18977565	-	PF1193	-	DNA protection protein DPS
1235	 38.02	0	1138175..1138558	+	127	18977566	-	PF1194	-	FUR family transcriptional regulator
1236	 38.01	0	1138566..1139057	-	163	18977567	-	PF1195	-	hypothetical protein
1237	 40.00	0	1139141..1139695	+	184	18977568	-	PF1196	-	hypothetical protein
1238	 39.72	0	1139700..1140779	+	359	18977569	-	PF1197	-	NADH oxidase /nitrite reductase
1239	 38.67	0	1140762..1141454	-	230	18977570	-	PF1198	-	sugar fermentation stimulation protein A
1240	 36.19	-1	1141457..1141981	-	174	18977571	-	PF1199	-	hypothetical protein
1241	 44.17	0	1142268..1142747	-	159	18977572	-	PF1200	-	transposase
1242	 41.82	0	1142874..1143368	-	164	18977573	-	PF1201	-	hypothetical protein
1243	 33.33	-2	1143450..1143563	+	37	18977574	-	PF1202	-	hypothetical protein
1244	 47.24	+1	1143520..1145403	+	627	18977575	-	PF1203	-	formaldehyde:ferredoxin oxidoreductase
1245	 45.91	+1	1145476..1146843	+	455	18977576	-	PF1204	-	seryl-tRNA synthetase
1246	 44.66	+1	1146840..1147307	+	155	18977577	-	PF1205	-	hypothetical protein
1247	 40.34	0	1147304..1147774	-	156	18977578	-	PF1206	-	hypothetical protein
1248	 41.99	0	1147771..1148001	-	76	18977579	-	PF1207	-	hypothetical protein
1249	 44.03	0	1148005..1149537	-	510	18977580	-	PF1208	-	beta-mannosidase
1250	 46.12	+1	1149709..1151577	+	622	18977581	-	PF1209	-	oligopeptide ABC transporter
1251	 42.76	0	1151648..1152634	+	328	18977582	-	PF1210	-	dipeptide ABC transporter, permease protein
1252	 46.20	+1	1152639..1153571	+	310	18977583	-	PF1211	-	dipeptide ABC transporter, permease protein
1253	 46.13	+1	1153573..1154541	+	322	18977584	-	PF1212	-	putative peptide ABC uptake protein
1254	 45.53	+1	1154534..1155484	+	316	18977585	-	PF1213	-	oligopeptide ABC transporter
1255	 44.18	0	1155668..1156165	-	165	18977586	nusA	PF1214	-	transcription elongation factor NusA-like protein
1256	 37.65	0	1156504..1156758	-	84	33359550	-	PF1214.2n	-	hypothetical protein
1257	 43.97	0	1156775..1156915	-	46	18977587	-	PF1215	-	hypothetical protein
1258	 46.67	+1	1157046..1157195	-	49	18977588	-	PF1216	-	hypothetical protein
1259	 40.97	0	1157412..1157555	-	47	18977589	-	PF1217	-	hypothetical protein
1260	 35.59	-1	1157583..1157759	+	58	18977590	-	PF1218	-	hypothetical protein
1261	 42.59	0	1158091..1158468	+	125	18977591	-	PF1219	-	hypothetical protein
1262	 41.53	0	1158419..1158601	-	60	33359551	-	PF1218.1n	-	hypothetical protein
1263	 44.44	0	1158674..1158880	-	68	18977592	-	PF1220	-	sulfate adenylyltransferase
1264	 44.74	+1	1158892..1159671	-	259	18977593	-	PF1221	-	dissimilatory sulfate adenylyltransferase
1265	 38.14	0	1159693..1160004	+	103	18977594	-	PF1222	-	hypothetical protein
1266	 36.56	-1	1159977..1160348	+	123	18977595	-	PF1223	-	hypothetical protein
1267	 37.50	0	1160968..1161111	-	47	18977596	-	PF1224	-	hypothetical protein
1268	 35.07	-1	1161130..1161417	-	95	18977597	-	PF1225	-	hypothetical protein
1269	 35.77	-1	1161426..1161548	-	40	33359552	-	PF1226	-	hypothetical protein
1270	 45.78	+1	1162126..1162350	+	74	18977599	-	PF1227	-	transposase
1271	 36.94	-1	1162413..1162994	+	193	18977600	-	PF1228	-	hypothetical protein
1272	 38.94	0	1162991..1163668	-	225	18977601	-	PF1229	-	glycosylase
1273	 35.10	-1	1163631..1164083	-	150	18977602	-	PF1230	-	putative atpase
1274	 37.58	0	1164067..1164513	-	148	18977603	-	PF1231	-	AsnC family transcriptional regulator
1275	 40.24	0	1164636..1165967	+	443	18977604	-	PF1232	-	4-aminobutyrate aminotransferase
1276	 44.38	0	1166614..1168767	-	717	18977605	-	PF1233	-	putative chitinase
1277	 40.94	0	1168805..1169842	-	345	18977606	-	PF1234	-	putative chitinase
1278	 41.67	0	1170171..1170542	+	123	18977607	ccrB	PF1235	-	camphor resistance protein CrcB
1279	 39.37	0	1170548..1170928	+	126	18977608	-	PF1236	-	hypothetical protein
1280	 37.82	0	1170990..1171346	+	118	18977609	-	PF1237	-	hypothetical protein
1281	 39.60	0	1171391..1173289	+	632	18977610	-	PF1238	-	putative ABC transporter
1282	 36.82	-1	1173286..1173744	-	152	18977611	-	PF1239	-	hypothetical protein
1283	 43.77	0	1173816..1175099	+	427	18977612	-	PF1240	-	putative purine permease
1284	 40.49	0	1175104..1175802	+	232	18977613	upp	PF1241	-	uracil phosphoribosyltransferase
1285	 39.67	0	1175771..1177696	-	641	18977614	-	PF1242	-	dehydrogenase subunit alpha
1286	 33.68	-1	1177712..1177999	-	95	18977615	-	PF1243	-	hypothetical protein
1287	 38.01	0	1178002..1178322	-	106	18977616	-	PF1244	-	hypothetical protein
1288	 41.92	0	1178445..1179923	+	492	18977617	-	PF1245	-	d-nopaline dehydrogenase
1289	 40.64	0	1179929..1181077	+	382	18977618	-	PF1246	-	sarcosine oxidase, subunit beta
1290	 37.64	0	1181229..1182179	+	316	18977619	-	PF1247	-	hypothetical protein
1291	 44.15	0	1182150..1183021	-	290	33359553	-	PF1248	-	transposase
1292	 42.48	0	1182566..1183024	-	152	33359554	-	PF1247.1n	-	hypothetical protein
1293	 37.43	0	1183142..1184068	+	308	18977621	-	PF1249	-	putative ABC transporter
1294	 35.91	-1	1184065..1184685	+	206	18977622	-	PF1250	-	hypothetical protein
1295	 40.45	0	1185029..1186264	+	411	18977623	-	PF1251	-	hypothetical protein
1296	 39.29	0	1186268..1187257	+	329	18977624	-	PF1252	-	hypothetical protein
1297	 42.05	0	1187250..1188419	-	389	18977625	-	PF1253	-	aspartate aminotransferase
1298	 43.06	0	1188413..1190149	+	578	18977626	-	PF1254	-	putative sodium dependent transporter
1299	 44.44	0	1190160..1190258	+	32	18977627	-	PF1255	-	hypothetical protein
1300	 38.50	0	1190306..1191040	+	244	18977628	-	PF1256	-	hypothetical protein
1301	 40.51	0	1191037..1191969	-	310	18977629	-	PF1257	-	nol1-nop2-sun family nucleolar protein III
1302	 40.29	0	1191971..1192660	-	229	18977630	-	PF1258	-	ribose-5-phosphate isomerase A
1303	 38.01	0	1192664..1192984	-	106	18977631	-	PF1259	-	hypothetical protein
1304	 38.03	0	1193034..1193948	-	304	18977632	-	PF1260	-	hypothetical protein
1305	 35.60	-1	1193950..1194522	-	190	18977633	-	PF1261	-	hypothetical protein
1306	 35.73	-1	1194449..1195240	+	263	18977634	-	PF1262	-	ribosome biogenesis protein
1307	 37.41	0	1195302..1196675	+	457	18977635	-	PF1263	-	hypothetical protein
1308	 39.81	0	1196737..1197153	+	138	18977636	-	PF1264	-	translation initiation factor IF-5A
1309	 38.06	0	1197174..1198526	-	450	18977637	-	PF1265	-	nol1-nop2-sun family nucleolar protein II
1310	 40.51	0	1198668..1199768	+	366	18977638	-	PF1266	-	cystathionine gamma-synthase
1311	 40.71	0	1199777..1200793	+	338	18977639	-	PF1267	-	hypothetical protein
1312	 40.22	0	1200806..1201735	+	309	18977640	-	PF1268	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1313	 39.43	0	1201737..1202753	+	338	18977641	-	PF1269	-	methionine synthase
1314	 37.44	0	1202750..1203649	-	299	33359555	-	PF1270	-	hypothetical protein
1315	 38.46	0	1203884..1204195	-	103	18977643	-	PF1271	-	hypothetical protein
1316	 41.54	0	1204579..1205346	+	255	18977644	-	PF1272	-	hypothetical protein
1317	 40.94	0	1205343..1206026	+	227	18977645	-	PF1273	-	hypothetical protein
1318	 43.13	0	1206019..1207008	+	329	18977646	-	PF1274	-	urea amidolyase
1319	 44.01	0	1207044..1207352	+	102	18977647	-	PF1275	-	hypothetical protein
1320	 36.88	-1	1207349..1207630	-	93	18977648	-	PF1276	-	hypothetical protein
1321	 41.05	0	1207631..1208395	-	254	18977649	-	PF1277	-	hypothetical protein
1322	 40.00	0	1208389..1208733	-	114	18977650	-	PF1278	-	hypothetical protein
1323	 45.42	+1	1208774..1209319	-	181	18977651	rpl10e	PF1279	-	50S ribosomal protein L10e
1324	 43.43	0	1209542..1209937	+	131	18977652	-	PF1280	-	hypothetical protein
1325	 44.00	0	1210188..1210562	-	124	18977653	-	PF1281	-	superoxide reductase
1326	 40.61	0	1210573..1210737	-	54	18977654	-	PF1282	-	rubredoxin
1327	 42.05	0	1210814..1211329	-	171	18977655	-	PF1283	-	rubrerythrin
1328	 46.15	+1	1211434..1211628	-	64	33359556	-	PF1284	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.