IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1193	 41.25	0	1102626..1103231	-	201	18977525	-	PF1153	-	putative monovalent cation/H+ antiporter subunit E
1194	 44.22	0	1103228..1103980	-	250	161484709	-	PF1154	-	NAD-dependent deacetylase
1195	 39.96	0	1104056..1104583	+	175	18977527	-	PF1155	-	hypothetical protein
1196	 44.73	+1	1104585..1105847	-	420	18977528	rbcL	PF1156	-	ribulose bisophosphate carboxylase
1197	 37.62	0	1105951..1107117	+	388	18977529	-	PF1157	-	hypothetical protein
1198	 38.67	0	1107110..1107934	-	274	18977530	-	PF1158	-	hypothetical protein
1199	 42.38	0	1107965..1109080	-	371	18977531	-	PF1159	-	L-tyrosine decarboxylase
1200	 37.93	0	1109080..1109688	-	202	18977532	-	PF1160	-	hypothetical protein
1201	 37.58	0	1109722..1110357	-	211	18977533	-	PF1161	-	hypothetical protein
1202	 39.69	0	1110332..1110787	-	151	18977534	-	PF1162	-	hypothetical protein
1203	 43.43	0	1110465..1110662	+	65	18977535	-	PF1163	-	hypothetical protein
1204	 36.29	-1	1110664..1111845	+	393	18977536	-	PF1164	-	putative Na+/H+ antiporter
1205	 38.53	0	1111866..1113521	+	551	18977537	-	PF1165	-	hypothetical protein
1206	 38.62	0	1113537..1114823	+	428	18977538	-	PF1166	-	exonuclease putative
1207	 38.32	0	1114820..1117468	+	882	18977539	-	PF1167	-	chromosome segregation protein
1208	 40.27	0	1117465..1118820	+	451	18977540	-	PF1168	-	hypothetical protein
1209	 41.33	0	1118839..1119138	+	99	18977541	-	PF1169	-	hypothetical protein
1210	 40.74	0	1119163..1119432	-	89	18977542	-	PF1170	-	hypothetical protein
1211	 38.72	0	1119426..1120001	-	191	18977543	-	PF1171	-	hypothetical protein
1212	 38.75	0	1120410..1121645	+	411	18977544	-	PF1172	-	RNA methyltransferase
1213	 44.53	0	1121628..1122020	-	130	18977545	-	PF1173	-	hypothetical protein
1214	 37.44	0	1122074..1122487	+	137	18977546	-	PF1174	-	hypothetical protein
1215	 40.28	0	1122487..1123119	+	210	18977547	-	PF1175	-	hypothetical protein
1216	 36.05	-1	1123120..1123413	+	97	18977548	-	PF1176	-	hypothetical protein
1217	 40.97	0	1123434..1124729	+	431	18977549	-	PF1177	-	gtp1/obg family GTP-binding protein
1218	 41.30	0	1124713..1125654	-	313	18977550	-	PF1178	-	putative Na-dependant transporter
1219	 39.71	0	1125717..1125920	-	67	18977551	-	PF1179	-	hypothetical protein
1220	 40.97	0	1125994..1127145	+	383	18977552	-	PF1180	-	threonine synthase
1221	 39.78	0	1127148..1128482	-	444	18977553	-	PF1181	-	hypothetical protein
1222	 42.52	0	1128650..1129030	-	126	18977554	-	PF1182	-	hypothetical protein
1223	 42.08	0	1128978..1129160	-	60	33359548	-	PF1182.1n	-	hypothetical protein
1224	 41.35	0	1129203..1129601	-	132	33359549	-	PF1183	-	hypothetical protein
1225	 37.62	0	1129620..1130342	-	240	18977556	-	PF1184	-	hypothetical protein
1226	 42.36	0	1130502..1131554	+	350	18977557	-	PF1185	-	acetylornithine deacetylase
1227	 44.39	0	1131551..1132879	-	442	18977558	-	PF1186	-	NADH oxidase
1228	 44.48	0	1132938..1134005	-	355	18977559	-	PF1187	-	hypothetical protein
1229	 40.73	0	1134061..1135494	+	477	18977560	-	PF1188	-	pyruvate kinase
1230	 38.58	0	1135505..1135828	+	107	18977561	-	PF1189	-	hypothetical protein
1231	 40.19	0	1135866..1136390	+	174	18977562	-	PF1190	-	hypothetical protein
1232	 38.93	0	1136394..1137179	-	261	18977563	-	PF1191	-	hypothetical protein
1233	 39.18	0	1137142..1137432	-	96	18977564	-	PF1192	-	hypothetical protein
1234	 41.76	0	1137512..1138069	-	185	18977565	-	PF1193	-	DNA protection protein DPS
1235	 38.02	0	1138175..1138558	+	127	18977566	-	PF1194	-	FUR family transcriptional regulator
1236	 38.01	0	1138566..1139057	-	163	18977567	-	PF1195	-	hypothetical protein
1237	 40.00	0	1139141..1139695	+	184	18977568	-	PF1196	-	hypothetical protein
1238	 39.72	0	1139700..1140779	+	359	18977569	-	PF1197	-	NADH oxidase /nitrite reductase
1239	 38.67	0	1140762..1141454	-	230	18977570	-	PF1198	-	sugar fermentation stimulation protein A
1240	 36.19	-1	1141457..1141981	-	174	18977571	-	PF1199	-	hypothetical protein
1241	 44.17	0	1142268..1142747	-	159	18977572	-	PF1200	-	transposase
1242	 41.82	0	1142874..1143368	-	164	18977573	-	PF1201	-	hypothetical protein
1243	 33.33	-2	1143450..1143563	+	37	18977574	-	PF1202	-	hypothetical protein
1244	 47.24	+1	1143520..1145403	+	627	18977575	-	PF1203	-	formaldehyde:ferredoxin oxidoreductase
1245	 45.91	+1	1145476..1146843	+	455	18977576	-	PF1204	-	seryl-tRNA synthetase
1246	 44.66	+1	1146840..1147307	+	155	18977577	-	PF1205	-	hypothetical protein
1247	 40.34	0	1147304..1147774	-	156	18977578	-	PF1206	-	hypothetical protein
1248	 41.99	0	1147771..1148001	-	76	18977579	-	PF1207	-	hypothetical protein
1249	 44.03	0	1148005..1149537	-	510	18977580	-	PF1208	-	beta-mannosidase
1250	 46.12	+1	1149709..1151577	+	622	18977581	-	PF1209	-	oligopeptide ABC transporter
1251	 42.76	0	1151648..1152634	+	328	18977582	-	PF1210	-	dipeptide ABC transporter, permease protein
1252	 46.20	+1	1152639..1153571	+	310	18977583	-	PF1211	-	dipeptide ABC transporter, permease protein
1253	 46.13	+1	1153573..1154541	+	322	18977584	-	PF1212	-	putative peptide ABC uptake protein
1254	 45.53	+1	1154534..1155484	+	316	18977585	-	PF1213	-	oligopeptide ABC transporter
1255	 44.18	0	1155668..1156165	-	165	18977586	nusA	PF1214	-	transcription elongation factor NusA-like protein
1256	 37.65	0	1156504..1156758	-	84	33359550	-	PF1214.2n	-	hypothetical protein
1257	 43.97	0	1156775..1156915	-	46	18977587	-	PF1215	-	hypothetical protein
1258	 46.67	+1	1157046..1157195	-	49	18977588	-	PF1216	-	hypothetical protein
1259	 40.97	0	1157412..1157555	-	47	18977589	-	PF1217	-	hypothetical protein
1260	 35.59	-1	1157583..1157759	+	58	18977590	-	PF1218	-	hypothetical protein
1261	 42.59	0	1158091..1158468	+	125	18977591	-	PF1219	-	hypothetical protein
1262	 41.53	0	1158419..1158601	-	60	33359551	-	PF1218.1n	-	hypothetical protein
1263	 44.44	0	1158674..1158880	-	68	18977592	-	PF1220	-	sulfate adenylyltransferase
1264	 44.74	+1	1158892..1159671	-	259	18977593	-	PF1221	-	dissimilatory sulfate adenylyltransferase
1265	 38.14	0	1159693..1160004	+	103	18977594	-	PF1222	-	hypothetical protein
1266	 36.56	-1	1159977..1160348	+	123	18977595	-	PF1223	-	hypothetical protein
1267	 37.50	0	1160968..1161111	-	47	18977596	-	PF1224	-	hypothetical protein
1268	 35.07	-1	1161130..1161417	-	95	18977597	-	PF1225	-	hypothetical protein
1269	 35.77	-1	1161426..1161548	-	40	33359552	-	PF1226	-	hypothetical protein
1270	 45.78	+1	1162126..1162350	+	74	18977599	-	PF1227	-	transposase
1271	 36.94	-1	1162413..1162994	+	193	18977600	-	PF1228	-	hypothetical protein
1272	 38.94	0	1162991..1163668	-	225	18977601	-	PF1229	-	glycosylase
1273	 35.10	-1	1163631..1164083	-	150	18977602	-	PF1230	-	putative atpase
1274	 37.58	0	1164067..1164513	-	148	18977603	-	PF1231	-	AsnC family transcriptional regulator
1275	 40.24	0	1164636..1165967	+	443	18977604	-	PF1232	-	4-aminobutyrate aminotransferase
1276	 44.38	0	1166614..1168767	-	717	18977605	-	PF1233	-	putative chitinase
1277	 40.94	0	1168805..1169842	-	345	18977606	-	PF1234	-	putative chitinase
1278	 41.67	0	1170171..1170542	+	123	18977607	ccrB	PF1235	-	camphor resistance protein CrcB
1279	 39.37	0	1170548..1170928	+	126	18977608	-	PF1236	-	hypothetical protein
1280	 37.82	0	1170990..1171346	+	118	18977609	-	PF1237	-	hypothetical protein
1281	 39.60	0	1171391..1173289	+	632	18977610	-	PF1238	-	putative ABC transporter
1282	 36.82	-1	1173286..1173744	-	152	18977611	-	PF1239	-	hypothetical protein
1283	 43.77	0	1173816..1175099	+	427	18977612	-	PF1240	-	putative purine permease
1284	 40.49	0	1175104..1175802	+	232	18977613	upp	PF1241	-	uracil phosphoribosyltransferase
1285	 39.67	0	1175771..1177696	-	641	18977614	-	PF1242	-	dehydrogenase subunit alpha
1286	 33.68	-1	1177712..1177999	-	95	18977615	-	PF1243	-	hypothetical protein
1287	 38.01	0	1178002..1178322	-	106	18977616	-	PF1244	-	hypothetical protein
1288	 41.92	0	1178445..1179923	+	492	18977617	-	PF1245	-	d-nopaline dehydrogenase
1289	 40.64	0	1179929..1181077	+	382	18977618	-	PF1246	-	sarcosine oxidase, subunit beta
1290	 37.64	0	1181229..1182179	+	316	18977619	-	PF1247	-	hypothetical protein
1291	 44.15	0	1182150..1183021	-	290	33359553	-	PF1248	-	transposase
1292	 42.48	0	1182566..1183024	-	152	33359554	-	PF1247.1n	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.