IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1116	 40.65	0	1029169..1030029	-	286	18977451	-	PF1079	-	hypothetical protein
1117	 39.28	0	1030401..1031123	+	240	18977452	-	PF1080	-	hypothetical protein
1118	 37.47	0	1031128..1031490	+	120	18977453	-	PF1081	-	hypothetical protein
1119	 34.04	-1	1031691..1031975	+	94	18977454	-	PF1082	-	hypothetical protein
1120	 43.40	0	1032190..1033431	-	413	18977455	-	PF1083	-	hypothetical protein
1121	 41.61	0	1033428..1033910	-	160	18977456	-	PF1084	-	phosphopantetheine adenylyltransferase
1122	 45.30	+1	1033957..1035285	+	442	18977457	-	PF1085	-	hypothetical protein
1123	 44.00	0	1035272..1035496	-	74	33359537	-	PF1085.1n	-	hypothetical protein
1124	 40.40	0	1035603..1036055	-	150	18977458	-	PF1086	-	hypothetical protein
1125	 45.43	+1	1036049..1036387	-	112	18977459	-	PF1087	-	hypothetical protein
1126	 41.25	0	1036421..1036723	-	100	18977460	-	PF1088	-	hypothetical protein
1127	 41.62	0	1036723..1037241	-	172	33359538	-	PF1089	-	hypothetical protein
1128	 40.51	0	1037290..1038027	-	245	18977462	-	PF1090	-	putative ABC transporter
1129	 35.20	-1	1037895..1038323	-	142	18977463	-	PF1091	-	hypothetical protein
1130	 38.03	0	1038325..1039494	-	389	18977464	-	PF1092	-	hypothetical protein
1131	 35.87	-1	1039452..1039727	-	91	18977465	-	PF1093	-	hypothetical protein
1132	 39.74	0	1039877..1040188	-	103	18977466	-	PF1094	-	hypothetical protein
1133	 41.84	0	1039944..1040225	+	93	33359539	-	PF1093.1n	-	hypothetical protein
1134	 37.82	0	1040222..1040533	+	103	18977467	-	PF1095	-	hypothetical protein
1135	 46.55	+1	1040727..1043927	-	1066	18977468	ileS	PF1096	-	isoleucyl-tRNA synthetase
1136	 39.72	0	1044057..1045121	-	354	18977469	-	PF1097	-	hypothetical protein
1137	 40.80	0	1045164..1045766	-	200	33359540	-	PF1098	-	hypothetical protein
1138	 41.55	0	1045663..1046697	+	344	18977471	-	PF1099	-	putative formamidase (formamide amidohydrolase)
1139	 38.70	0	1047131..1048117	+	328	18977472	-	PF1100	-	hypothetical protein
1140	 45.30	+1	1048214..1049533	+	439	18977473	-	PF1101	-	hypothetical protein
1141	 42.72	0	1049547..1050569	+	340	18977474	-	PF1102	-	bifunctional short chain isoprenyl diphosphate synthase
1142	 40.53	0	1050633..1051466	+	277	18977475	ppnK	PF1103	-	inorganic polyphosphate/ATP-NAD kinase
1143	 43.20	0	1051467..1052429	-	320	18977476	-	PF1104	-	homoserine dehydrogenase
1144	 45.25	+1	1052537..1053073	+	178	18977477	-	PF1105	-	pyrazinamidase/nicotinamidase pxnc
1145	 40.47	0	1053060..1054040	-	326	18977478	-	PF1106	-	hypothetical protein
1146	 42.63	0	1054030..1054470	-	146	18977479	-	PF1107	-	hit family protein
1147	 38.35	0	1054664..1055878	+	404	18977480	-	PF1108	-	putative alpha-dextrin endo-1, 6-alpha-glucosidase
1148	 44.57	0	1055952..1058861	+	969	18977481	-	PF1109	-	hypothetical protein
1149	 46.44	+1	1058831..1059349	+	172	18977482	-	PF1110	-	hypothetical protein
1150	 45.33	+1	1059388..1060437	-	349	18977483	-	PF1111	-	hypothetical protein
1151	 41.21	0	1060582..1061406	-	274	18977484	-	PF1112	-	hypothetical protein
1152	 29.80	-2	1061413..1061610	-	65	33359541	-	PF1112.1n	-	hypothetical protein
1153	 42.51	0	1061850..1062503	+	217	18977485	-	PF1113	-	hypothetical protein
1154	 44.34	0	1062504..1063139	+	211	18977486	-	PF1114	-	orotidine 5'-phosphate decarboxylase
1155	 43.93	0	1063124..1063642	+	172	18977487	-	PF1115	-	hypothetical protein
1156	 43.40	0	1063621..1064067	+	148	18977488	-	PF1116	-	glycerol-3-phosphate cytidyltransferase
1157	 36.33	-1	1066016..1066282	+	88	33359542	-	PF1117	-	hypothetical protein
1158	 38.49	0	1066279..1067247	-	322	18977490	-	PF1118	-	hypothetical protein
1159	 41.57	0	1067252..1067761	-	169	18977491	-	PF1119	-	hypothetical protein
1160	 39.82	0	1067761..1069935	-	724	18977492	-	PF1120	-	ATP-dependent RNA helicase
1161	 44.30	0	1069932..1070624	-	230	33359543	-	PF1121	-	hypothetical protein
1162	 42.05	0	1070572..1071627	-	351	18977494	-	PF1122	-	hypothetical protein
1163	 41.77	0	1071624..1073009	-	461	33359544	-	PF1123	-	hypothetical protein
1164	 40.18	0	1072954..1073976	-	340	18977496	-	PF1124	-	hypothetical protein
1165	 41.76	0	1073960..1074469	-	169	18977497	-	PF1125	-	hypothetical protein
1166	 40.09	0	1074447..1075334	-	295	18977498	-	PF1126	-	hypothetical protein
1167	 37.35	0	1075331..1076773	-	480	33359545	-	PF1127	-	hypothetical protein
1168	 37.67	0	1076764..1077732	-	322	18977500	-	PF1128	-	hypothetical protein
1169	 38.95	0	1077729..1080344	-	871	18977501	-	PF1129	-	hypothetical protein
1170	 38.94	0	1080337..1081353	-	338	18977502	-	PF1130	-	hypothetical protein
1171	 39.75	0	1081470..1082264	-	264	18977503	-	PF1131	-	hypothetical protein
1172	 41.34	0	1082373..1083983	-	536	18977504	-	PF1132	-	putative carbamoyl transferase
1173	 40.10	0	1084016..1084222	-	68	18977505	-	PF1133	-	hypothetical protein
1174	 40.88	0	1084357..1084899	+	180	18977506	-	PF1134	-	putative kinase
1175	 44.48	0	1084902..1085771	+	289	18977507	-	PF1135	-	heat shock protein HtpX
1176	 38.56	0	1085844..1087967	+	707	18977508	-	PF1136	-	hypothetical protein
1177	 42.91	0	1088001..1090955	-	984	18977509	-	PF1137	-	translation initiation factor IF-2
1178	 44.26	0	1092336..1093598	-	420	18977510	-	PF1138	-	hypothetical protein
1179	 41.73	0	1093579..1094745	-	388	18977511	-	PF1139	-	hypothetical protein
1180	 46.14	+1	1094811..1095638	+	275	18977512	-	PF1140	-	translation initiation factor IF-2 subunit alpha
1181	 48.63	+2	1095644..1095826	+	60	18977513	-	PF1141	-	H/ACA RNA-protein complex component Nop10p
1182	 45.67	+1	1095784..1096626	+	280	18977514	-	PF1142	-	hypothetical protein
1183	 44.95	+1	1096655..1097506	+	283	18977515	panB	PF1143	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1184	 43.41	0	1097496..1098299	-	267	18977516	-	PF1144	-	hypothetical protein
1185	 45.83	+1	1098283..1099170	-	295	18977517	-	PF1145	-	Mrp/Nbp35 family ATP-binding protein
1186	 35.86	-1	1099298..1099495	+	65	18977518	-	PF1146	-	hypothetical protein
1187	 42.69	0	1099504..1100967	-	487	18977519	-	PF1147	-	putative monovalent cation/H+ antiporter subunit D
1188	 44.09	0	1100964..1101242	-	92	33359546	-	PF1148	-	putative monovalent cation/H+ antiporter subunit C
1189	 40.57	0	1101239..1101625	-	128	33359547	-	PF1149	-	putative monovalent cation/H+ antiporter subunit B
1190	 42.09	0	1101622..1102089	-	155	18977522	-	PF1150	-	putative monovalent cation/H+ antiporter subunit B
1191	 40.63	0	1102070..1102384	-	104	161484710	-	PF1151	-	putative monovalent cation/H+ antiporter subunit G
1192	 43.70	0	1102381..1102650	-	89	18977524	-	PF1152	-	putative monovalent cation/H+ antiporter subunit F
1193	 41.25	0	1102626..1103231	-	201	18977525	-	PF1153	-	putative monovalent cation/H+ antiporter subunit E
1194	 44.22	0	1103228..1103980	-	250	161484709	-	PF1154	-	NAD-dependent deacetylase
1195	 39.96	0	1104056..1104583	+	175	18977527	-	PF1155	-	hypothetical protein
1196	 44.73	+1	1104585..1105847	-	420	18977528	rbcL	PF1156	-	ribulose bisophosphate carboxylase
1197	 37.62	0	1105951..1107117	+	388	18977529	-	PF1157	-	hypothetical protein
1198	 38.67	0	1107110..1107934	-	274	18977530	-	PF1158	-	hypothetical protein
1199	 42.38	0	1107965..1109080	-	371	18977531	-	PF1159	-	L-tyrosine decarboxylase
1200	 37.93	0	1109080..1109688	-	202	18977532	-	PF1160	-	hypothetical protein
1201	 37.58	0	1109722..1110357	-	211	18977533	-	PF1161	-	hypothetical protein
1202	 39.69	0	1110332..1110787	-	151	18977534	-	PF1162	-	hypothetical protein
1203	 43.43	0	1110465..1110662	+	65	18977535	-	PF1163	-	hypothetical protein
1204	 36.29	-1	1110664..1111845	+	393	18977536	-	PF1164	-	putative Na+/H+ antiporter
1205	 38.53	0	1111866..1113521	+	551	18977537	-	PF1165	-	hypothetical protein
1206	 38.62	0	1113537..1114823	+	428	18977538	-	PF1166	-	exonuclease putative
1207	 38.32	0	1114820..1117468	+	882	18977539	-	PF1167	-	chromosome segregation protein
1208	 40.27	0	1117465..1118820	+	451	18977540	-	PF1168	-	hypothetical protein
1209	 41.33	0	1118839..1119138	+	99	18977541	-	PF1169	-	hypothetical protein
1210	 40.74	0	1119163..1119432	-	89	18977542	-	PF1170	-	hypothetical protein
1211	 38.72	0	1119426..1120001	-	191	18977543	-	PF1171	-	hypothetical protein
1212	 38.75	0	1120410..1121645	+	411	18977544	-	PF1172	-	RNA methyltransferase
1213	 44.53	0	1121628..1122020	-	130	18977545	-	PF1173	-	hypothetical protein
1214	 37.44	0	1122074..1122487	+	137	18977546	-	PF1174	-	hypothetical protein
1215	 40.28	0	1122487..1123119	+	210	18977547	-	PF1175	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.