IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1009	 44.06	0	932256..933467	+	403	18977345	-	PF0973	-	acetyl-CoA acetyltransferase
1010	 41.85	0	933469..933879	+	136	18977346	-	PF0974	-	hypothetical protein
1011	 37.80	0	933872..934363	+	163	33359531	-	PF0975	-	hypothetical protein
1012	 34.94	-1	934365..934613	+	82	18977348	-	PF0976	-	putative transmembrane protein
1013	 40.57	0	934610..935203	+	197	18977349	-	PF0977	-	hypothetical protein
1014	 35.66	-1	935205..936191	+	328	18977350	-	PF0978	-	hypothetical protein
1015	 37.30	0	936303..936680	+	125	18977351	-	PF0979	-	hypothetical protein
1016	 40.76	0	936677..937363	+	228	18977352	-	PF0980	-	putative aspartate racemase
1017	 38.52	0	937611..938864	+	417	18977353	-	PF0981	-	efflux transport protein
1018	 36.65	-1	938821..939393	-	190	33359532	-	PF0982	-	hypothetical protein
1019	 40.00	0	939418..940167	-	249	18977355	-	PF0983	-	DNA polymerase sliding clamp
1020	 36.67	-1	940157..940336	-	59	18977356	-	PF0984	-	hypothetical protein
1021	 39.02	0	940306..941361	+	351	18977357	-	PF0985	-	DNA-directed RNA polymerase subunit M
1022	 41.74	0	940318..940650	-	110	18977358	-	PF0986	-	DNA-directed RNA polymerase subunit M
1023	 38.54	0	941348..941923	+	191	18977359	-	PF0987	-	hypothetical protein
1024	 37.72	0	941910..942548	+	212	18977360	-	PF0988	-	hypothetical protein
1025	 39.87	0	942767..944266	+	499	18977361	pheS	PF0989	-	phenylalanyl-tRNA synthetase subunit alpha
1026	 40.57	0	944277..945947	+	556	18977362	pheT	PF0990	-	phenylalanyl-tRNA synthetase subunit beta
1027	 43.65	0	946117..947163	-	348	18977363	tdh	PF0991	-	L-threonine 3-dehydrogenase
1028	 42.80	0	947243..948172	-	309	18977364	-	PF0992	-	hypothetical protein
1029	 37.92	0	948183..949250	-	355	18977365	-	PF0993	-	hypothetical protein
1030	 40.11	0	949263..952715	-	1150	18977366	-	PF0994	-	type II secretion system protein
1031	 35.91	-1	952697..953626	-	309	18977367	-	PF0995	-	hypothetical protein
1032	 38.79	0	953631..955040	-	469	18977368	-	PF0996	-	hypothetical protein
1033	 40.48	0	955166..955501	+	111	18977369	-	PF0997	-	hypothetical protein
1034	 38.30	0	955455..956522	+	355	18977370	-	PF0998	-	GTP-binding protein
1035	 41.67	0	956523..956642	-	39	18977371	-	PF0999	-	oligopeptide transport system permease protein appc, c-terminal fragment
1036	 38.36	0	956635..957768	-	377	18977372	-	PF1000	-	oligopeptide transport system permease protein appc
1037	 37.89	0	957770..958801	-	343	18977373	-	PF1001	-	oligopeptide transport system permease protein
1038	 39.25	0	958931..960028	+	365	18977374	-	PF1002	-	hypothetical protein
1039	 42.73	0	960123..961250	+	375	18977375	-	PF1003	-	phosphate-binding periplasmic protein precursor
1040	 39.80	0	961264..962748	+	494	18977376	-	PF1004	-	alkaline phosphatase IV precursor
1041	 37.25	0	962782..963624	+	280	18977377	-	PF1005	-	hypothetical protein
1042	 39.81	0	963693..964541	+	282	18977378	-	PF1006	-	putative phosphate transport system permease protein C
1043	 42.53	0	964489..965358	+	289	18977379	-	PF1007	-	phosphate transport system permease psta
1044	 39.24	0	965355..966116	+	253	18977380	-	PF1008	-	putative ABC transport protein
1045	 38.05	0	966113..966706	+	197	18977381	-	PF1009	-	hypothetical protein
1046	 36.85	-1	966769..967308	+	179	18977382	-	PF1010	-	phosphate ABC transporter, regulatory protein
1047	 40.11	0	967412..968296	+	294	18977383	-	PF1011	-	daunorubicin resistance ATP-binding protein drrA
1048	 42.89	0	968293..969474	+	393	18977384	-	PF1012	-	putative ABC transporter
1049	 37.95	0	969765..970154	+	129	18977385	-	PF1013	-	hypothetical protein
1050	 42.42	0	970159..970719	-	186	18977386	-	PF1014	-	hypothetical protein
1051	 42.14	0	971045..972259	-	404	18977387	-	PF1015	-	putative transposase b - like protein
1052	 41.13	0	972249..972479	-	76	33359533	-	PF1015.1n	-	hypothetical protein
1053	 43.71	0	972838..973521	-	227	18977388	-	PF1016	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
1054	 40.30	0	973527..974315	-	262	18977389	-	PF1017	-	hypothetical protein
1055	 41.23	0	974612..974725	+	37	18977390	-	PF1018	-	50S ribosomal protein L41E
1056	 32.57	-2	974725..975378	+	217	18977391	-	PF1019	-	hypothetical protein
1057	 41.65	0	975450..976688	+	412	18977392	-	PF1020	-	putative phosphate transport protein pitb
1058	 38.42	0	976693..977361	+	222	18977393	-	PF1021	-	hypothetical protein
1059	 39.91	0	977368..977595	-	75	18977394	-	PF1022	-	AsnC family transcriptional regulator
1060	 44.59	0	977662..978363	-	233	18977395	-	PF1023	-	transposase
1061	 38.02	0	978478..979929	+	483	18977396	cysS	PF1024	-	cysteinyl-tRNA synthetase
1062	 35.60	-1	979926..980984	-	352	18977397	-	PF1025	-	hypothetical protein
1063	 41.51	0	981072..982379	-	435	18977398	-	PF1026	-	malate oxidoreductase (malic enzyme)
1064	 35.38	-1	982426..983547	-	373	18977399	-	PF1027	-	hypothetical protein
1065	 34.16	-1	983651..984613	+	320	18977400	-	PF1028	-	hypothetical protein
1066	 34.75	-1	984618..985466	+	282	18977401	-	PF1029	-	hypothetical protein
1067	 38.67	0	985542..987716	+	724	18977402	metG	PF1030	-	methionyl-tRNA synthetase
1068	 35.90	-1	987709..988020	-	103	18977403	-	PF1031	-	divalent cation tolerance protein
1069	 39.74	0	988026..989195	-	389	18977404	-	PF1032	-	hypothetical protein
1070	 43.47	0	989258..989908	-	216	18977405	-	PF1033	-	peroxiredoxin
1071	 39.89	0	990043..990591	-	182	18977406	pyrE	PF1034	-	orotate phosphoribosyltransferase
1072	 44.22	0	990790..991083	+	97	18977407	-	PF1035	-	50S ribosomal protein L21e
1073	 39.94	0	991090..991452	+	120	18977408	-	PF1036	-	hypothetical protein
1074	 31.05	-2	991550..991768	+	72	18977409	-	PF1037	-	hypothetical protein
1075	 37.54	0	991757..992374	-	205	18977410	-	PF1038	-	hypothetical protein
1076	 43.39	0	992445..993200	+	251	161484712	-	PF1039	-	geranylgeranylglyceryl phosphate synthase-like protein
1077	 37.53	0	993197..993625	+	142	18977412	-	PF1040	-	hypothetical protein
1078	 42.22	0	993579..995435	-	618	18977413	-	PF1041	-	ATPase
1079	 36.98	-1	995486..996088	+	200	18977414	-	PF1042	-	hypothetical protein
1080	 36.94	-1	996174..997394	+	406	18977415	-	PF1043	-	hypothetical protein
1081	 38.48	0	997397..997843	-	148	18977416	-	PF1044	-	hypothetical protein
1082	 40.57	0	997903..998565	+	220	18977417	adk	PF1045	-	adenylate kinase
1083	 41.92	0	998603..1000360	+	585	18977418	-	PF1046	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
1084	 43.33	0	1000398..1000697	+	99	18977419	-	PF1047	-	hypothetical protein
1085	 41.33	0	1000677..1001801	-	374	18977420	-	PF1048	-	hypothetical protein
1086	 40.83	0	1001903..1002916	+	337	18977421	-	PF1049	-	hypothetical protein
1087	 37.50	0	1002913..1003272	+	119	33359534	-	PF1050	-	hypothetical protein
1088	 41.48	0	1003300..1005900	+	866	18977423	-	PF1051	-	ATP-dependent helicase
1089	 39.84	0	1006040..1007161	+	373	18977424	-	PF1052	-	aspartate kinase
1090	 41.39	0	1007172..1008251	+	359	161484711	-	PF1053	-	aspartate kinase
1091	 46.30	+1	1008202..1009080	+	292	18977426	-	PF1054	-	homoserine kinase
1092	 41.86	0	1009071..1010255	+	394	18977427	-	PF1055	-	threonine synthase
1093	 41.69	0	1010252..1011256	+	334	18977428	-	PF1056	-	aspartate-semialdehyde dehydrogenase
1094	 40.71	0	1011463..1012695	+	410	18977429	pgk	PF1057	-	phosphoglycerate kinase
1095	 39.29	0	1012727..1014019	+	430	18977430	-	PF1058	-	hypothetical protein
1096	 41.50	0	1014012..1015187	+	391	18977431	-	PF1059	-	hypothetical protein
1097	 42.79	0	1015156..1015779	-	207	18977432	-	PF1060	-	hypothetical protein
1098	 42.59	0	1015839..1016054	+	71	33359535	-	PF1061	-	sulfur carrier protein ThiS
1099	 43.96	0	1016146..1016418	+	90	18977434	-	PF1062	-	hypothetical protein
1100	 43.29	0	1016450..1017484	+	344	18977435	-	PF1063	-	hypothetical protein
1101	 38.31	0	1017447..1017848	+	133	18977436	-	PF1064	-	hypothetical protein
1102	 45.59	+1	1017843..1018601	-	252	18977437	-	PF1065	-	hypothetical protein
1103	 42.97	0	1018574..1019818	+	414	18977438	-	PF1066	-	putative aminotransferase
1104	 46.26	+1	1019936..1020082	-	48	18977439	-	PF1067	-	hypothetical protein
1105	 34.09	-1	1020266..1020397	+	43	18977440	-	PF1068	-	hypothetical protein
1106	 47.14	+1	1020469..1020852	+	127	18977441	-	PF1069	-	30S ribosomal protein S8e
1107	 39.01	0	1020830..1021252	+	140	18977442	-	PF1070	-	hypothetical protein
1108	 41.38	0	1021338..1022753	+	471	18977443	-	PF1071	-	asparagine synthetase
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.