IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
957	 40.27	0	888936..889742	-	268	18977294	-	PF0922	-	hypothetical protein
958	 41.61	0	889729..890211	-	160	18977295	-	PF0923	-	hypothetical protein
959	 37.30	0	890208..890636	-	142	18977296	-	PF0924	-	hypothetical protein
960	 37.21	0	890633..891484	-	283	18977297	-	PF0925	-	heme biosynthesis protein
961	 45.18	+1	891798..892025	-	75	18977298	-	PF0926	-	hypothetical protein
962	 51.26	+2	892432..892866	-	144	33359527	-	PF0927	-	hypothetical protein
963	 41.51	0	893178..893336	+	52	18977300	-	PF0928	-	hypothetical protein
964	 39.07	0	893390..893860	+	156	18977301	-	PF0929	-	hypothetical protein
965	 44.40	0	893960..894655	+	231	18977302	-	PF0930	-	hypothetical protein
966	 42.59	0	894645..895130	-	161	18977303	ndk	PF0931	-	nucleoside diphosphate kinase
967	 41.18	0	895117..895371	-	84	18977304	-	PF0932	-	hypothetical protein
968	 41.88	0	895395..897290	-	631	18977305	-	PF0933	-	DNA repair helicase rad3, putative
969	 42.89	0	897630..898016	+	128	18977306	-	PF0934	-	hypothetical protein
970	 45.66	+1	898325..900019	+	564	18977307	-	PF0935	-	acetolactate synthase
971	 46.45	+1	900021..901019	+	332	18977308	-	PF0936	-	ketol-acid reductoisomerase
972	 44.13	0	901054..902553	+	499	18977309	-	PF0937	-	2-isopropylmalate synthase
973	 45.18	+1	902558..903832	+	424	18977310	-	PF0938	-	3-isopropylmalate dehydratase large subunit
974	 45.05	+1	903829..904323	+	164	18977311	leuD	PF0939	-	3-isopropylmalate dehydratase small subunit
975	 44.10	0	904320..905387	+	355	18977312	-	PF0940	-	3-isopropylmalate dehydrogenase 2
976	 45.69	+1	905368..906945	+	525	18977313	-	PF0941	-	alpha-isopropylmalate/homocitrate synthase family transferase
977	 45.11	+1	906942..908597	+	551	18977314	-	PF0942	-	dihydroxy-acid dehydratase
978	 39.29	0	908759..909094	+	111	18977315	-	PF0943	-	hypothetical protein
979	 38.75	0	909057..909425	+	122	18977316	-	PF0944	-	hypothetical protein
980	 48.28	+1	909426..909833	-	135	18977317	-	PF0945	-	hypothetical protein
981	 45.50	+1	909695..910639	+	314	18977318	-	PF0946	-	transposase
982	 42.66	0	910599..911381	-	260	33359528	-	PF0947	-	hypothetical protein
983	 37.91	0	911973..912758	+	261	18977320	-	PF0948	-	hypothetical protein
984	 36.13	-1	912771..913127	+	118	18977321	-	PF0949	-	hypothetical protein
985	 41.24	0	913334..913510	+	58	18977322	-	PF0950	-	hypothetical protein
986	 38.79	0	913536..913865	+	109	18977323	-	PF0951	-	hypothetical protein
987	 40.85	0	913939..915003	+	354	18977324	-	PF0952	-	hypothetical protein
988	 40.23	0	914959..915828	-	289	18977325	-	PF0953	-	hypothetical protein
989	 38.75	0	915933..916301	-	122	18977326	-	PF0954	-	hypothetical protein
990	 36.02	-1	916398..917366	-	322	18977327	-	PF0955	-	hypothetical protein
991	 37.62	0	917540..918403	-	287	18977328	-	PF0956	-	hypothetical protein
992	 39.78	0	918553..918738	-	61	18977329	-	PF0957	-	hypothetical protein
993	 37.60	0	918903..919277	-	124	18977330	-	PF0958	-	hypothetical protein
994	 44.30	0	919736..919963	-	75	33359529	-	PF0958.3n	-	hypothetical protein
995	 44.09	0	920180..920365	-	61	18977331	-	PF0959	-	hypothetical protein
996	 41.30	0	920401..920739	-	112	18977332	-	PF0960	-	hypothetical protein
997	 34.25	-1	921062..921280	-	72	18977333	-	PF0961	-	hypothetical protein
998	 36.80	-1	921442..921960	-	172	18977334	-	PF0962	-	hypothetical protein
999	 43.64	0	922036..924549	-	837	18977335	-	PF0963	-	cell division protein CDC48
1000	 39.41	0	924554..925327	-	257	33359530	-	PF0964	-	hypothetical protein
1001	 46.79	+1	925374..926369	-	331	18977337	-	PF0965	-	pyruvate ferredoxin oxidoreductase subunit beta
1002	 44.25	0	926380..927570	-	396	18977338	porA	PF0966	-	pyruvate ferredoxin oxidoreductase subunit alpha
1003	 40.57	0	927581..927898	-	105	18977339	porD	PF0967	-	pyuvate ferredoxin oxidoreductase subunit delta
1004	 44.34	0	927947..928882	-	311	18977340	-	PF0968	-	2-ketoisovalerate ferredoxin oxidoreductase subunit beta
1005	 43.38	0	928888..930072	-	394	18977341	vorA	PF0969	-	2-ketoisovalerate ferredoxin oxidoreductase subunit alpha
1006	 38.36	0	930085..930402	-	105	18977342	vorD	PF0970	-	2-ketoisovalerate ferredoxin oxidoreductase subunit delta
1007	 42.29	0	930439..930996	-	185	18977343	-	PF0971	-	pyruvate ferredoxin oxidoreductase subunit gamma
1008	 44.54	0	931235..932287	+	350	18977344	-	PF0972	-	hypothetical protein
1009	 44.06	0	932256..933467	+	403	18977345	-	PF0973	-	acetyl-CoA acetyltransferase
1010	 41.85	0	933469..933879	+	136	18977346	-	PF0974	-	hypothetical protein
1011	 37.80	0	933872..934363	+	163	33359531	-	PF0975	-	hypothetical protein
1012	 34.94	-1	934365..934613	+	82	18977348	-	PF0976	-	putative transmembrane protein
1013	 40.57	0	934610..935203	+	197	18977349	-	PF0977	-	hypothetical protein
1014	 35.66	-1	935205..936191	+	328	18977350	-	PF0978	-	hypothetical protein
1015	 37.30	0	936303..936680	+	125	18977351	-	PF0979	-	hypothetical protein
1016	 40.76	0	936677..937363	+	228	18977352	-	PF0980	-	putative aspartate racemase
1017	 38.52	0	937611..938864	+	417	18977353	-	PF0981	-	efflux transport protein
1018	 36.65	-1	938821..939393	-	190	33359532	-	PF0982	-	hypothetical protein
1019	 40.00	0	939418..940167	-	249	18977355	-	PF0983	-	DNA polymerase sliding clamp
1020	 36.67	-1	940157..940336	-	59	18977356	-	PF0984	-	hypothetical protein
1021	 39.02	0	940306..941361	+	351	18977357	-	PF0985	-	DNA-directed RNA polymerase subunit M
1022	 41.74	0	940318..940650	-	110	18977358	-	PF0986	-	DNA-directed RNA polymerase subunit M
1023	 38.54	0	941348..941923	+	191	18977359	-	PF0987	-	hypothetical protein
1024	 37.72	0	941910..942548	+	212	18977360	-	PF0988	-	hypothetical protein
1025	 39.87	0	942767..944266	+	499	18977361	pheS	PF0989	-	phenylalanyl-tRNA synthetase subunit alpha
1026	 40.57	0	944277..945947	+	556	18977362	pheT	PF0990	-	phenylalanyl-tRNA synthetase subunit beta
1027	 43.65	0	946117..947163	-	348	18977363	tdh	PF0991	-	L-threonine 3-dehydrogenase
1028	 42.80	0	947243..948172	-	309	18977364	-	PF0992	-	hypothetical protein
1029	 37.92	0	948183..949250	-	355	18977365	-	PF0993	-	hypothetical protein
1030	 40.11	0	949263..952715	-	1150	18977366	-	PF0994	-	type II secretion system protein
1031	 35.91	-1	952697..953626	-	309	18977367	-	PF0995	-	hypothetical protein
1032	 38.79	0	953631..955040	-	469	18977368	-	PF0996	-	hypothetical protein
1033	 40.48	0	955166..955501	+	111	18977369	-	PF0997	-	hypothetical protein
1034	 38.30	0	955455..956522	+	355	18977370	-	PF0998	-	GTP-binding protein
1035	 41.67	0	956523..956642	-	39	18977371	-	PF0999	-	oligopeptide transport system permease protein appc, c-terminal fragment
1036	 38.36	0	956635..957768	-	377	18977372	-	PF1000	-	oligopeptide transport system permease protein appc
1037	 37.89	0	957770..958801	-	343	18977373	-	PF1001	-	oligopeptide transport system permease protein
1038	 39.25	0	958931..960028	+	365	18977374	-	PF1002	-	hypothetical protein
1039	 42.73	0	960123..961250	+	375	18977375	-	PF1003	-	phosphate-binding periplasmic protein precursor
1040	 39.80	0	961264..962748	+	494	18977376	-	PF1004	-	alkaline phosphatase IV precursor
1041	 37.25	0	962782..963624	+	280	18977377	-	PF1005	-	hypothetical protein
1042	 39.81	0	963693..964541	+	282	18977378	-	PF1006	-	putative phosphate transport system permease protein C
1043	 42.53	0	964489..965358	+	289	18977379	-	PF1007	-	phosphate transport system permease psta
1044	 39.24	0	965355..966116	+	253	18977380	-	PF1008	-	putative ABC transport protein
1045	 38.05	0	966113..966706	+	197	18977381	-	PF1009	-	hypothetical protein
1046	 36.85	-1	966769..967308	+	179	18977382	-	PF1010	-	phosphate ABC transporter, regulatory protein
1047	 40.11	0	967412..968296	+	294	18977383	-	PF1011	-	daunorubicin resistance ATP-binding protein drrA
1048	 42.89	0	968293..969474	+	393	18977384	-	PF1012	-	putative ABC transporter
1049	 37.95	0	969765..970154	+	129	18977385	-	PF1013	-	hypothetical protein
1050	 42.42	0	970159..970719	-	186	18977386	-	PF1014	-	hypothetical protein
1051	 42.14	0	971045..972259	-	404	18977387	-	PF1015	-	putative transposase b - like protein
1052	 41.13	0	972249..972479	-	76	33359533	-	PF1015.1n	-	hypothetical protein
1053	 43.71	0	972838..973521	-	227	18977388	-	PF1016	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
1054	 40.30	0	973527..974315	-	262	18977389	-	PF1017	-	hypothetical protein
1055	 41.23	0	974612..974725	+	37	18977390	-	PF1018	-	50S ribosomal protein L41E
1056	 32.57	-2	974725..975378	+	217	18977391	-	PF1019	-	hypothetical protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.