IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
863	 50.91	0	794562..795113	-	183	145591129	-	Pars_0895	-	hypothetical protein
864	 50.00	0	795238..795861	+	207	145591130	-	Pars_0896	-	abortive infection protein
865	 59.74	0	795858..796694	-	278	145591131	-	Pars_0897	-	hypothetical protein
866	 50.81	0	796716..796961	-	81	145591132	-	Pars_0898	-	hypothetical protein
867	 56.54	0	796958..797806	-	282	145591133	-	Pars_0899	-	thiosulfate sulfurtransferase
868	 55.69	0	797986..798231	-	81	145591134	-	Pars_0900	-	hypothetical protein
869	 48.64	-1	800795..802231	+	478	145591135	-	Pars_0904	-	hypothetical protein
870	 47.49	-1	802228..803223	-	331	145591136	-	Pars_0905	-	radical SAM domain-containing protein
871	 39.41	-2	803351..804124	+	257	145591137	-	Pars_0906	-	nitrate reductase, gamma subunit
872	 45.36	-1	804168..805406	+	412	145591138	-	Pars_0907	-	sulfite reductase, dissimilatory-type alpha subunit
873	 47.44	-1	805403..806536	+	377	145591139	-	Pars_0908	-	sulfite reductase, dissimilatory-type beta subunit
874	 27.03	-2	806526..806969	+	147	145591140	-	Pars_0909	-	hypothetical protein
875	 44.35	-1	807013..807348	+	111	145591141	-	Pars_0910	-	DsrC family protein
876	 28.76	-2	807378..807989	+	203	145591142	-	Pars_0911	-	hypothetical protein
877	 40.82	-2	808042..809229	+	395	145591143	-	Pars_0912	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
878	 36.46	-2	809226..809705	+	159	145591144	-	Pars_0913	-	hypothetical protein
879	 27.93	-2	809781..810335	+	184	145591145	-	Pars_0914	-	hypothetical protein
880	 39.25	-2	810391..811809	+	472	145591146	-	Pars_0915	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
881	 54.61	0	811858..812139	-	93	145591147	-	Pars_0916	-	Fis family transcriptional regulator
882	 58.24	0	812223..812495	-	90	145591148	-	Pars_0917	-	hypothetical protein
883	 48.59	-1	812725..813078	-	117	145591149	-	Pars_0918	-	HEPN domain-containing protein
884	 54.17	0	813126..813509	-	127	145591150	-	Pars_0919	-	phosphomethylpyrimidine kinase
885	 54.08	0	814300..814728	-	142	145591151	-	Pars_0921	-	hypothetical protein
886	 52.33	0	814725..815945	-	406	145591152	-	Pars_0922	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
887	 56.08	0	815945..816775	-	276	145591153	-	Pars_0923	-	polysulphide reductase, NrfD
888	 57.80	0	816772..817470	-	232	145591154	-	Pars_0924	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
889	 56.44	0	817467..820655	-	1062	145591155	-	Pars_0925	-	molybdopterin oxidoreductase
890	 52.64	0	820758..821192	-	144	145591156	-	Pars_0926	-	hypothetical protein
891	 50.34	0	821227..821820	-	197	145591157	-	Pars_0927	-	hypothetical protein
892	 53.09	0	821801..822964	-	387	145591158	-	Pars_0928	-	glutamyl-tRNA reductase
893	 53.76	0	822955..824085	-	376	145591159	-	Pars_0929	-	cytochrome c biogenesis protein, transmembrane region
894	 58.47	0	824082..824630	-	182	145591160	-	Pars_0930	-	hypothetical protein
895	 58.66	0	824614..825225	-	203	145591161	-	Pars_0931	-	ABC transporter related
896	 54.67	0	825291..825665	-	124	145591162	-	Pars_0932	-	hypothetical protein
897	 53.17	0	825662..826039	-	125	145591163	-	Pars_0933	-	hypothetical protein
898	 58.10	0	826082..826501	+	139	145591164	-	Pars_0934	-	PaREP1 domain-containing protein
899	 49.91	0	826944..827510	-	188	145591165	-	Pars_0935	-	paREP5ab
900	 55.21	0	827664..828536	-	290	145591166	-	Pars_0936	-	polysulphide reductase, NrfD
901	 57.67	0	828533..829099	-	188	145591167	-	Pars_0937	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
902	 51.22	0	829096..831549	-	817	145591168	-	Pars_0938	-	molybdopterin oxidoreductase
903	 52.94	0	832000..832407	+	135	145591169	-	Pars_0939	-	signal-transduction protein
904	 55.09	0	832428..832643	+	71	145591170	-	Pars_0940	-	paREP6
905	 56.12	0	832624..833154	+	176	145591171	-	Pars_0941	-	hypothetical protein
906	 54.50	0	833133..833354	+	73	145591172	-	Pars_0942	-	paREP6
907	 50.85	0	833462..833872	+	136	145591173	-	Pars_0943	-	DNA polymerase beta subunit
908	 50.72	0	833860..834273	+	137	145591174	-	Pars_0944	-	hypothetical protein
909	 59.52	0	834334..834543	-	69	145591175	-	Pars_0945	-	hypothetical protein
910	 49.40	-1	834760..835008	+	82	145591176	-	Pars_0946	-	hypothetical protein
911	 56.76	0	835510..837579	-	689	145591177	-	Pars_0947	-	CBS domain-containing protein
912	 54.00	0	837576..839588	-	670	145591178	-	Pars_0948	-	acetyl-CoA synthetase
913	 53.03	0	839794..840717	-	307	145591179	-	Pars_0949	-	homoserine dehydrogenase
914	 50.30	0	840763..841263	+	166	145591180	-	Pars_0950	-	PaREP1 domain-containing protein
915	 46.21	-1	841295..841861	-	188	145591181	-	Pars_0951	-	formate dehydrogenase protein fdhE
916	 49.86	0	841848..842549	-	233	145591182	-	Pars_0952	-	formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit)
917	 55.44	0	842589..843443	-	284	145591183	-	Pars_0953	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
918	 53.12	0	843446..846952	-	1168	145591184	-	Pars_0954	-	molybdopterin oxidoreductase
919	 46.46	-1	847221..847898	-	225	145591185	-	Pars_0955	-	formate dehydrogenase delta subunit
920	 46.70	-1	847880..848425	-	181	145591186	-	Pars_0956	-	hypothetical protein
921	 57.16	0	848460..849479	-	339	145591187	-	Pars_0957	-	aspartate-semialdehyde dehydrogenase
922	 56.16	0	849495..850484	-	329	145591188	-	Pars_0958	-	aspartate kinase
923	 60.04	0	850481..851476	-	331	145591189	-	Pars_0959	-	threonine synthase
924	 53.02	0	851863..852375	+	170	145591190	-	Pars_0960	-	hypothetical protein
925	 52.44	0	852429..853391	-	320	145591191	-	Pars_0961	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
926	 51.39	0	853388..854356	-	322	145591192	-	Pars_0962	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
927	 54.80	0	854353..855414	-	353	145591193	-	Pars_0963	-	binding-protein-dependent transport systems inner membrane component
928	 49.85	0	855416..856414	-	332	145591194	-	Pars_0964	-	binding-protein-dependent transport systems inner membrane component
929	 52.92	0	856424..858649	-	741	145591195	-	Pars_0965	-	extracellular solute-binding protein
930	 60.64	+1	858940..860001	+	353	145591196	argC	Pars_0966	-	N-acetyl-gamma-glutamyl-phosphate reductase
931	 58.52	0	859998..860783	+	261	145591197	-	Pars_0967	-	acetylglutamate kinase
932	 56.99	0	860853..861038	+	61	145591198	-	Pars_0968	-	putative lysine biosynthesis protein
933	 62.08	+1	861273..862232	+	319	145591199	-	Pars_0969	-	argininosuccinate synthase
934	 57.69	0	862281..862436	+	51	145591200	-	Pars_0970	-	hypothetical protein
935	 59.30	0	862433..863722	+	429	145591201	-	Pars_0971	-	argininosuccinate lyase
936	 56.41	0	863684..863995	-	103	145591202	-	Pars_0972	-	hypothetical protein
937	 50.57	0	863976..864503	-	175	145591203	-	Pars_0973	-	hypothetical protein
938	 52.58	0	864625..865611	+	328	145591204	-	Pars_0974	-	ABC transporter related
939	 54.92	0	865608..866339	+	243	145591205	-	Pars_0975	-	binding-protein-dependent transport systems inner membrane component
940	 54.46	0	866336..867097	+	253	145591206	-	Pars_0976	-	binding-protein-dependent transport systems inner membrane component
941	 56.63	0	866972..868426	-	484	145591207	-	Pars_0977	-	CoA-binding domain-containing protein
942	 52.61	0	868423..869610	-	395	145591208	-	Pars_0978	-	hypothetical protein
943	 50.24	0	869701..870120	-	139	145591209	-	Pars_0979	-	signal transduction protein
944	 48.77	-1	870144..871439	-	431	145591210	-	Pars_0980	-	hypothetical protein
945	 52.12	0	871439..872545	-	368	145591211	-	Pars_0981	-	ATPase
946	 54.04	0	872697..873971	+	424	145591212	-	Pars_0982	-	hypothetical protein
947	 53.86	0	873968..875818	+	616	145591213	-	Pars_0983	-	hypothetical protein
948	 58.18	0	875815..876969	+	384	145591214	-	Pars_0984	-	metallophosphoesterase
949	 54.43	0	876962..879070	+	702	145591215	-	Pars_0985	-	SMC domain-containing protein
950	 52.82	0	879137..880306	-	389	145591216	-	Pars_0986	-	peptide chain release factor 1
951	 52.02	0	880399..880719	-	106	145591217	rps10p	Pars_0987	-	30S ribosomal protein S10P
952	 55.81	0	880784..881584	+	266	145591218	-	Pars_0988	-	stationary-phase survival protein SurE
953	 52.05	0	881581..882408	+	275	145591219	-	Pars_0989	-	hypothetical protein
954	 51.98	0	882386..882637	-	83	145591220	-	Pars_0990	-	regulatory protein, ArsR
955	 61.14	+1	882668..883318	-	216	145591221	-	Pars_0991	-	hypothetical protein
956	 57.06	0	883327..884232	-	301	145591222	-	Pars_0992	-	dihydrodipicolinate synthetase
957	 54.15	0	884278..885228	-	316	145591223	-	Pars_0993	-	hypothetical protein
958	 54.23	0	885376..886203	-	275	145591224	-	Pars_0994	-	aldo/keto reductase
959	 54.10	0	886297..887673	+	458	145591225	-	Pars_0995	-	peptidase U62, modulator of DNA gyrase
960	 56.00	0	887670..888953	+	427	145591226	-	Pars_0996	-	peptidase U62, modulator of DNA gyrase
961	 51.58	0	888971..889699	-	242	145591227	-	Pars_0997	-	creatininase
962	 51.71	0	890317..891312	+	331	145591228	-	Pars_0998	-	periplasmic solute binding protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.