IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
830	 57.99	0	764523..765029	-	168	145591096	-	Pars_0861	-	hypothetical protein
831	 59.63	0	765041..766006	+	321	145591097	-	Pars_0862	-	phosphoesterase, DHHA1
832	 60.28	0	765957..767615	-	552	145591098	-	Pars_0863	-	peptidase S49
833	 59.47	0	767660..768535	+	291	145591099	-	Pars_0864	-	peptidase S1 and S6, chymotrypsin/Hap
834	 60.91	+1	768532..768861	-	109	145591100	-	Pars_0865	-	cupin 2 domain-containing protein
835	 54.61	0	768858..769139	-	93	145591101	-	Pars_0866	-	putative regulatory protein
836	 63.62	+1	769199..770215	+	338	145591102	-	Pars_0867	-	N-acetyl-ornithine/N-acetyl-lysine deacetylase
837	 54.05	0	770243..771478	+	411	145591103	-	Pars_0868	-	hypothetical protein
838	 48.96	-1	771475..771762	+	95	145591104	-	Pars_0869	-	hypothetical protein
839	 53.28	0	771863..772228	+	121	145591105	-	Pars_0870	-	hypothetical protein
840	 59.84	0	772212..772826	+	204	145591106	-	Pars_0871	-	methyltransferase type 11
841	 62.17	+1	772837..773370	+	177	145591107	-	Pars_0872	-	hypothetical protein
842	 57.61	0	773810..774295	+	161	145591108	-	Pars_0873	-	PaREP1 domain-containing protein
843	 57.25	0	774412..774942	+	176	145591109	-	Pars_0874	-	PaREP1 domain-containing protein
844	 65.02	+1	775240..775482	+	80	145591110	-	Pars_0875	-	hypothetical protein
845	 47.24	-1	776128..776580	+	150	145591111	-	Pars_0876	-	paREP15, putative coiled-coil protein
846	 53.24	0	776876..777523	-	215	145591112	-	Pars_0877	-	hypothetical protein
847	 47.85	-1	778435..778737	+	100	145591113	-	Pars_0878	-	PaREP1 domain-containing protein
848	 49.80	0	779128..781659	+	843	145591114	-	Pars_0879	-	hypothetical protein
849	 45.79	-1	781738..783054	+	438	145591115	-	Pars_0880	-	hypothetical protein
850	 52.46	0	783316..783885	+	189	145591116	-	Pars_0881	-	hypothetical protein
851	 61.34	+1	783873..784229	+	118	145591117	-	Pars_0882	-	hypothetical protein
852	 58.71	0	784278..784478	-	66	145591118	-	Pars_0883	-	hypothetical protein
853	 53.94	0	784573..784902	-	109	145591119	-	Pars_0884	-	hypothetical protein
854	 50.79	0	784915..785166	+	83	145591120	-	Pars_0885	-	hypothetical protein
855	 59.00	0	785141..786262	-	373	145591121	-	Pars_0886	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
856	 52.51	0	786278..787909	-	543	145591122	-	Pars_0887	-	coenzyme A transferase
857	 49.66	-1	789850..790284	-	144	145591123	-	Pars_0889	-	hypothetical protein
858	 49.04	-1	790271..790531	-	86	145591124	-	Pars_0890	-	hypothetical protein
859	 53.86	0	790524..791507	-	327	145591125	-	Pars_0891	-	arsenite-transporting ATPase
860	 55.72	0	791504..792508	-	334	145591126	-	Pars_0892	-	arsenite-transporting ATPase
861	 47.39	-1	792505..792753	-	82	145591127	-	Pars_0893	-	hypothetical protein
862	 53.40	0	792770..794548	-	592	145591128	-	Pars_0894	-	carbon starvation protein CstA
863	 50.91	0	794562..795113	-	183	145591129	-	Pars_0895	-	hypothetical protein
864	 50.00	0	795238..795861	+	207	145591130	-	Pars_0896	-	abortive infection protein
865	 59.74	0	795858..796694	-	278	145591131	-	Pars_0897	-	hypothetical protein
866	 50.81	0	796716..796961	-	81	145591132	-	Pars_0898	-	hypothetical protein
867	 56.54	0	796958..797806	-	282	145591133	-	Pars_0899	-	thiosulfate sulfurtransferase
868	 55.69	0	797986..798231	-	81	145591134	-	Pars_0900	-	hypothetical protein
869	 48.64	-1	800795..802231	+	478	145591135	-	Pars_0904	-	hypothetical protein
870	 47.49	-1	802228..803223	-	331	145591136	-	Pars_0905	-	radical SAM domain-containing protein
871	 39.41	-2	803351..804124	+	257	145591137	-	Pars_0906	-	nitrate reductase, gamma subunit
872	 45.36	-1	804168..805406	+	412	145591138	-	Pars_0907	-	sulfite reductase, dissimilatory-type alpha subunit
873	 47.44	-1	805403..806536	+	377	145591139	-	Pars_0908	-	sulfite reductase, dissimilatory-type beta subunit
874	 27.03	-2	806526..806969	+	147	145591140	-	Pars_0909	-	hypothetical protein
875	 44.35	-1	807013..807348	+	111	145591141	-	Pars_0910	-	DsrC family protein
876	 28.76	-2	807378..807989	+	203	145591142	-	Pars_0911	-	hypothetical protein
877	 40.82	-2	808042..809229	+	395	145591143	-	Pars_0912	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
878	 36.46	-2	809226..809705	+	159	145591144	-	Pars_0913	-	hypothetical protein
879	 27.93	-2	809781..810335	+	184	145591145	-	Pars_0914	-	hypothetical protein
880	 39.25	-2	810391..811809	+	472	145591146	-	Pars_0915	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
881	 54.61	0	811858..812139	-	93	145591147	-	Pars_0916	-	Fis family transcriptional regulator
882	 58.24	0	812223..812495	-	90	145591148	-	Pars_0917	-	hypothetical protein
883	 48.59	-1	812725..813078	-	117	145591149	-	Pars_0918	-	HEPN domain-containing protein
884	 54.17	0	813126..813509	-	127	145591150	-	Pars_0919	-	phosphomethylpyrimidine kinase
885	 54.08	0	814300..814728	-	142	145591151	-	Pars_0921	-	hypothetical protein
886	 52.33	0	814725..815945	-	406	145591152	-	Pars_0922	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
887	 56.08	0	815945..816775	-	276	145591153	-	Pars_0923	-	polysulphide reductase, NrfD
888	 57.80	0	816772..817470	-	232	145591154	-	Pars_0924	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
889	 56.44	0	817467..820655	-	1062	145591155	-	Pars_0925	-	molybdopterin oxidoreductase
890	 52.64	0	820758..821192	-	144	145591156	-	Pars_0926	-	hypothetical protein
891	 50.34	0	821227..821820	-	197	145591157	-	Pars_0927	-	hypothetical protein
892	 53.09	0	821801..822964	-	387	145591158	-	Pars_0928	-	glutamyl-tRNA reductase
893	 53.76	0	822955..824085	-	376	145591159	-	Pars_0929	-	cytochrome c biogenesis protein, transmembrane region
894	 58.47	0	824082..824630	-	182	145591160	-	Pars_0930	-	hypothetical protein
895	 58.66	0	824614..825225	-	203	145591161	-	Pars_0931	-	ABC transporter related
896	 54.67	0	825291..825665	-	124	145591162	-	Pars_0932	-	hypothetical protein
897	 53.17	0	825662..826039	-	125	145591163	-	Pars_0933	-	hypothetical protein
898	 58.10	0	826082..826501	+	139	145591164	-	Pars_0934	-	PaREP1 domain-containing protein
899	 49.91	0	826944..827510	-	188	145591165	-	Pars_0935	-	paREP5ab
900	 55.21	0	827664..828536	-	290	145591166	-	Pars_0936	-	polysulphide reductase, NrfD
901	 57.67	0	828533..829099	-	188	145591167	-	Pars_0937	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
902	 51.22	0	829096..831549	-	817	145591168	-	Pars_0938	-	molybdopterin oxidoreductase
903	 52.94	0	832000..832407	+	135	145591169	-	Pars_0939	-	signal-transduction protein
904	 55.09	0	832428..832643	+	71	145591170	-	Pars_0940	-	paREP6
905	 56.12	0	832624..833154	+	176	145591171	-	Pars_0941	-	hypothetical protein
906	 54.50	0	833133..833354	+	73	145591172	-	Pars_0942	-	paREP6
907	 50.85	0	833462..833872	+	136	145591173	-	Pars_0943	-	DNA polymerase beta subunit
908	 50.72	0	833860..834273	+	137	145591174	-	Pars_0944	-	hypothetical protein
909	 59.52	0	834334..834543	-	69	145591175	-	Pars_0945	-	hypothetical protein
910	 49.40	-1	834760..835008	+	82	145591176	-	Pars_0946	-	hypothetical protein
911	 56.76	0	835510..837579	-	689	145591177	-	Pars_0947	-	CBS domain-containing protein
912	 54.00	0	837576..839588	-	670	145591178	-	Pars_0948	-	acetyl-CoA synthetase
913	 53.03	0	839794..840717	-	307	145591179	-	Pars_0949	-	homoserine dehydrogenase
914	 50.30	0	840763..841263	+	166	145591180	-	Pars_0950	-	PaREP1 domain-containing protein
915	 46.21	-1	841295..841861	-	188	145591181	-	Pars_0951	-	formate dehydrogenase protein fdhE
916	 49.86	0	841848..842549	-	233	145591182	-	Pars_0952	-	formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit)
917	 55.44	0	842589..843443	-	284	145591183	-	Pars_0953	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
918	 53.12	0	843446..846952	-	1168	145591184	-	Pars_0954	-	molybdopterin oxidoreductase
919	 46.46	-1	847221..847898	-	225	145591185	-	Pars_0955	-	formate dehydrogenase delta subunit
920	 46.70	-1	847880..848425	-	181	145591186	-	Pars_0956	-	hypothetical protein
921	 57.16	0	848460..849479	-	339	145591187	-	Pars_0957	-	aspartate-semialdehyde dehydrogenase
922	 56.16	0	849495..850484	-	329	145591188	-	Pars_0958	-	aspartate kinase
923	 60.04	0	850481..851476	-	331	145591189	-	Pars_0959	-	threonine synthase
924	 53.02	0	851863..852375	+	170	145591190	-	Pars_0960	-	hypothetical protein
925	 52.44	0	852429..853391	-	320	145591191	-	Pars_0961	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
926	 51.39	0	853388..854356	-	322	145591192	-	Pars_0962	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
927	 54.80	0	854353..855414	-	353	145591193	-	Pars_0963	-	binding-protein-dependent transport systems inner membrane component
928	 49.85	0	855416..856414	-	332	145591194	-	Pars_0964	-	binding-protein-dependent transport systems inner membrane component
929	 52.92	0	856424..858649	-	741	145591195	-	Pars_0965	-	extracellular solute-binding protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.