IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.13   STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
36	 50.61	0	29639..30784	-	381	145590303	-	Pars_0036	-	small GTP-binding protein
37	 58.23	0	30774..31259	-	161	145590304	-	Pars_0037	-	helix-turn-helix domain-containing protein
38	 50.00	0	31265..31756	+	163	145590305	-	Pars_0038	-	PUA domain-containing protein
39	 51.25	0	31725..32003	-	92	145590306	-	Pars_0039	-	hypothetical protein
40	 49.66	-1	31987..32280	-	97	145590307	-	Pars_0040	-	hypothetical protein
41	 46.50	-1	32360..32602	+	80	145590308	-	Pars_0041	-	like-Sm ribonucleoprotein, core
42	 50.94	0	32599..32757	+	52	145590309	rpl37e	Pars_0042	-	50S ribosomal protein L37e
43	 52.12	0	32838..33428	+	196	145590310	-	Pars_0043	-	multiple antibiotic resistance (MarC)-related protein
44	 53.40	0	33452..34378	+	308	145590311	-	Pars_0044	-	hypothetical protein
45	 53.65	0	34375..34758	-	127	145590312	-	Pars_0045	-	cytidine deaminase
46	 48.77	-1	34796..35728	+	310	145590313	-	Pars_0046	-	hypothetical protein
47	 55.04	0	35752..36534	+	260	145590314	-	Pars_0047	-	short-chain dehydrogenase/reductase SDR
48	 56.20	0	36523..37812	-	429	145590315	glyA	Pars_0048	-	serine hydroxymethyltransferase
49	 54.51	0	37851..38582	-	243	145590316	-	Pars_0049	-	molybdenum cofactor biosynthesis protein (moaC)
50	 49.09	-1	38579..38908	-	109	145590317	-	Pars_0050	-	hypothetical protein
51	 54.77	0	38939..39997	-	352	145590318	-	Pars_0051	-	isopentenyl pyrophosphate isomerase
52	 59.65	0	39997..40737	-	246	145590319	rpl2p	Pars_0052	-	50S ribosomal protein L2P
53	 46.30	-1	40871..41086	+	71	145590320	rps17E	Pars_0053	-	30S ribosomal protein S17e
54	 55.07	0	41089..41778	+	229	145590321	-	Pars_0054	-	peptidylprolyl isomerase, FKBP-type
55	 49.92	0	41882..42490	+	202	145590322	-	Pars_0055	-	proteasome endopeptidase complex
56	 54.52	0	42511..43770	+	419	145590323	-	Pars_0056	-	phosphopyruvate hydratase
57	 46.14	-1	43801..44214	+	137	145590324	-	Pars_0057	-	ModE family transcriptional regulator
58	 50.16	0	44199..45131	-	310	145590325	-	Pars_0058	-	putative molybdenum cofactor biosynthesis protein A
59	 49.30	-1	45588..46664	+	358	145590326	-	Pars_0059	-	protein kinase
60	 50.57	0	46684..47211	+	175	145590327	-	Pars_0060	-	FHA domain-containing protein
61	 51.04	0	47247..47873	+	208	145590328	rps2P	Pars_0061	-	30S ribosomal protein S2
62	 51.54	0	47928..48773	+	281	145590329	-	Pars_0062	-	hypothetical protein
63	 52.74	0	48770..50119	-	449	145590330	-	Pars_0063	-	pyruvate kinase
64	 51.52	0	50116..52023	-	635	145590331	-	Pars_0064	-	beta-lactamase domain-containing protein
65	 59.26	0	52072..53502	+	476	145590332	-	Pars_0065	-	cysteinyl-tRNA synthetase
66	 52.86	0	54516..54899	-	127	145590333	-	Pars_0068	-	hypothetical protein
67	 64.14	+1	55169..55405	+	78	145590334	-	Pars_0069	-	hypothetical protein
68	 52.78	0	55467..59045	-	1192	145590335	-	Pars_0070	-	hypothetical protein
69	 49.97	0	59049..61013	+	654	145590336	-	Pars_0071	-	hypothetical protein
70	 51.20	0	61054..69057	+	2667	145590337	-	Pars_0072	-	hypothetical protein
71	 55.11	0	69117..69713	+	198	145590338	-	Pars_0073	-	hypothetical protein
72	 61.98	+1	69743..70510	+	255	145590339	-	Pars_0074	-	hypothetical protein
73	 53.11	0	70491..71021	+	176	145590340	-	Pars_0075	-	putative adenylyl cyclase CyaB
74	 58.06	0	71029..72783	+	584	145590341	-	Pars_0076	-	ATP-dependent DNA ligase
75	 54.19	0	72771..73259	-	162	145590342	-	Pars_0077	-	hypothetical protein
76	 56.99	0	73337..74245	+	302	145590343	-	Pars_0078	-	ribokinase-like domain-containing protein
77	 50.00	0	74268..74603	+	111	145590344	-	Pars_0079	-	hypothetical protein
78	 52.65	0	74600..75277	+	225	145590345	-	Pars_0080	-	nucleotidyl transferase
79	 53.75	0	75309..76028	+	239	145590346	-	Pars_0081	-	hypothetical protein
80	 48.11	-1	76025..76579	+	184	145590347	-	Pars_0082	-	hypothetical protein
81	 57.65	0	76563..76928	-	121	145590348	-	Pars_0083	-	hypothetical protein
82	 56.59	0	76955..78016	+	353	145590349	-	Pars_0084	-	hypothetical protein
83	 47.40	-1	78797..79123	-	108	145590350	-	Pars_0085	-	hypothetical protein
84	 55.26	0	79428..80330	-	300	145590351	-	Pars_0086	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
85	 51.74	0	80332..80733	-	133	145590352	-	Pars_0087	-	hypothetical protein
86	 48.72	-1	81058..81369	+	103	145590353	-	Pars_0088	-	50S ribosomal protein L14e
87	 56.12	0	81366..82361	+	331	145590354	-	Pars_0089	-	H/ACA RNA-protein complex component Cbf5p
88	 53.06	0	82385..82678	+	97	145590355	-	Pars_0090	-	hypothetical protein
89	 54.14	0	82675..83169	+	164	145590356	-	Pars_0091	-	hypothetical protein
90	 48.80	-1	83190..83648	+	152	145590357	-	Pars_0092	-	hypothetical protein
91	 53.59	0	83645..84577	+	310	145590358	-	Pars_0093	-	oxidoreductase domain-containing protein
92	 50.09	0	84632..85174	+	180	145590359	-	Pars_0094	-	hypothetical protein
93	 54.12	0	85228..85713	+	161	145590360	-	Pars_0095	-	hypothetical protein
94	 56.14	0	85703..86500	-	265	145590361	-	Pars_0096	-	competence damage-inducible protein A
95	 57.49	0	86510..87370	-	286	145590362	-	Pars_0097	-	hypothetical protein
96	 51.45	0	87429..87842	+	137	145590363	-	Pars_0098	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
97	 53.85	0	87839..88072	+	77	145590364	-	Pars_0099	-	hypothetical protein
98	 55.64	0	88041..88430	-	129	145590365	-	Pars_0100	-	hypothetical protein
99	 52.21	0	88515..89171	-	218	145590366	-	Pars_0101	-	HhH-GPD family protein
100	 51.20	0	89217..89714	+	165	145590367	-	Pars_0102	-	hypothetical protein
101	 53.56	0	90082..90867	+	261	145590368	-	Pars_0103	-	hypothetical protein
102	 53.16	0	90897..92369	+	490	145590369	-	Pars_0104	-	carboxypeptidase Taq
103	 58.71	0	92366..92956	-	196	145590370	-	Pars_0105	-	hypothetical protein
104	 57.36	0	93044..93505	+	153	145590371	-	Pars_0106	-	phosphopantetheine adenylyltransferase
105	 56.29	0	93482..94792	-	436	145590372	-	Pars_0107	-	hypothetical protein
106	 47.13	-1	94819..95166	-	115	145590373	-	Pars_0108	-	hypothetical protein
107	 51.61	0	95281..95559	+	92	145590374	-	Pars_0109	-	hypothetical protein
108	 59.63	0	95540..96349	-	269	145590375	-	Pars_0110	-	hypothetical protein
109	 62.38	+1	96558..97397	+	279	145590376	-	Pars_0111	-	prephenate dehydratase
110	 62.73	+1	97498..99630	-	710	145590377	-	Pars_0112	-	DEAD/DEAH box helicase domain-containing protein
111	 60.11	0	99714..101756	+	680	145590378	-	Pars_0113	-	MCM family protein
112	 56.10	0	101779..102270	+	163	145590379	-	Pars_0114	-	PaREP1 domain-containing protein
113	 58.53	0	102487..102990	+	167	145590380	-	Pars_0115	-	hypothetical protein
114	 46.44	-1	103752..104201	+	149	145590381	-	Pars_0116	-	hypothetical protein
115	 56.75	0	104445..104918	+	157	145590382	-	Pars_0117	-	hypothetical protein
116	 63.83	+1	104912..105193	+	93	145590383	-	Pars_0118	-	hypothetical protein
117	 60.05	0	105224..107929	+	901	145590384	-	Pars_0119	-	hypothetical protein
118	 61.65	+1	107883..108899	-	338	145590385	-	Pars_0120	-	aminotransferase, class I and II
119	 53.27	0	108920..109255	-	111	145590386	-	Pars_0121	-	paREP15, putative coiled-coil protein
120	 63.22	+1	109276..110727	-	483	145590387	-	Pars_0122	-	radical SAM domain-containing protein
121	 54.50	0	110838..111026	+	62	145590388	-	Pars_0123	-	hypothetical protein
122	 60.00	0	111013..111552	+	179	145590389	-	Pars_0124	-	hypothetical protein
123	 63.07	+1	111540..111845	+	101	145590390	-	Pars_0125	-	hypothetical protein
124	 66.46	+2	111890..112369	+	159	145590391	-	Pars_0126	-	methyltransferase type 11
125	 59.66	0	112389..113759	+	456	145590392	-	Pars_0127	-	hypothetical protein
126	 58.17	0	113756..114214	+	152	145590393	-	Pars_0128	-	hypothetical protein
127	 56.94	0	114277..117627	+	1116	145590394	-	Pars_0129	-	hypothetical protein
128	 55.81	0	117624..118277	+	217	145590395	-	Pars_0130	-	hypothetical protein
129	 59.92	0	118274..118792	+	172	145590396	-	Pars_0131	-	hypothetical protein
130	 64.77	+1	118825..119934	+	369	145590397	-	Pars_0132	-	SufBD protein
131	 61.43	+1	119927..121225	-	432	145590398	-	Pars_0133	-	hypothetical protein
132	 57.57	0	121873..122883	+	336	145590399	-	Pars_0134	-	hypothetical protein
133	 58.52	0	123297..124106	-	269	145590400	-	Pars_0135	-	hypothetical protein
134	 57.76	0	124358..124660	-	100	145590401	-	Pars_0136	-	hypothetical protein
135	 51.27	0	124765..125394	-	209	145590402	-	Pars_0137	-	hypothetical protein
55.13	MEAN

5.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.