IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
742	 60.98	+1	689013..689663	-	216	145591008	-	Pars_0772	-	ERCC4 domain-containing protein
743	 56.27	0	689689..690063	-	124	145591009	rps17p	Pars_0773	-	30S ribosomal protein S17P
744	 57.29	0	690131..690610	-	159	145591010	rps19p	Pars_0774	-	30S ribosomal protein S19P
745	 57.19	0	690735..691652	+	305	145591011	-	Pars_0775	-	hypothetical protein
746	 56.11	0	691728..692693	+	321	145591012	-	Pars_0776	-	thioredoxin-disulfide reductase
747	 59.52	0	692700..693566	-	288	145591013	-	Pars_0777	-	hypothetical protein
748	 55.41	0	694432..694662	-	76	145591014	-	Pars_0778	-	phosphoesterase
749	 48.56	-1	694909..696510	-	533	145591015	-	Pars_0779	-	hypothetical protein
750	 60.13	0	697335..698696	-	453	145591016	-	Pars_0780	-	2-methylcitrate dehydratase
751	 58.76	0	698680..699615	-	311	145591017	-	Pars_0781	-	methylisocitrate lyase
752	 62.71	+1	699758..700288	+	176	145591018	-	Pars_0782	-	cobalamin adenosyltransferase
753	 54.90	0	700408..700611	+	67	145591019	-	Pars_0783	-	ribosomal protein L38
754	 59.70	0	700645..700974	+	109	145591020	rpl12p	Pars_0784	-	50S ribosomal protein L12P
755	 41.48	-2	700963..701649	-	228	145591021	-	Pars_0785	-	hypothetical protein
756	 58.12	0	701698..702270	+	190	145591022	-	Pars_0786	-	hypothetical protein
757	 51.89	0	702419..702736	+	105	145591023	-	Pars_0787	-	hypothetical protein
758	 54.63	0	702836..703807	-	323	145591024	-	Pars_0788	-	sodium/calcium exchanger membrane region
759	 54.93	0	703894..704370	-	158	145591025	-	Pars_0789	-	ThiJ/PfpI domain-containing protein
760	 53.45	0	705262..705594	+	110	145591026	-	Pars_0790	-	30S ribosomal protein S25e
761	 59.02	0	705591..706205	-	204	145591027	-	Pars_0791	-	hypothetical protein
762	 39.52	-2	706234..706524	-	96	145591028	-	Pars_0792	-	hypothetical protein
763	 58.57	0	706517..707566	-	349	145591029	-	Pars_0793	-	hypothetical protein
764	 55.47	0	707563..707964	-	133	145591030	-	Pars_0794	-	hypothetical protein
765	 57.84	0	707997..709106	-	369	145591031	-	Pars_0795	-	acetyl-CoA C-acyltransferase
766	 59.65	0	709135..710331	+	398	145591032	-	Pars_0796	-	3-hydroxy-3-methylglutaryl coenzyme A reductase
767	 43.80	-2	710324..710734	-	136	145591033	-	Pars_0797	-	hypothetical protein
768	 54.64	0	710824..713385	+	853	145591034	-	Pars_0798	-	DNA polymerase I
769	 59.81	0	713377..713799	-	140	145591035	-	Pars_0799	-	hypothetical protein
770	 61.73	+1	713813..714379	-	188	145591036	-	Pars_0800	-	CDP-alcohol phosphatidyltransferase
771	 53.00	0	714397..714879	-	160	145591037	-	Pars_0801	-	hypothetical protein
772	 51.85	0	714876..715172	-	98	145591038	-	Pars_0802	-	30S ribosomal protein S26e
773	 56.78	0	715217..716683	-	488	145591039	-	Pars_0803	-	prolyl-tRNA synthetase
774	 64.19	+1	716729..717496	-	255	145591040	-	Pars_0804	-	beta-aspartate methyltransferase, conjectural
775	 59.26	0	717515..718000	-	161	145591041	-	Pars_0805	-	hypothetical protein
776	 56.60	0	718146..718751	+	201	145591042	-	Pars_0806	-	transcription factor
777	 59.15	0	718748..719239	+	163	145591043	-	Pars_0807	-	hypothetical protein
778	 59.20	0	719285..719686	+	133	145591044	-	Pars_0808	-	holliday junction resolvase
779	 57.08	0	719707..719946	+	79	145591045	-	Pars_0809	-	hypothetical protein
780	 59.14	0	719995..720672	+	225	145591046	-	Pars_0810	-	beta-lactamase domain-containing protein
781	 60.35	0	720705..722066	+	453	145591047	-	Pars_0811	-	geranylgeranyl reductase
782	 54.15	0	722128..724380	+	750	145591048	-	Pars_0812	-	hypothetical protein
783	 55.94	0	724367..724888	+	173	145591049	-	Pars_0813	-	hypothetical protein
784	 65.80	+1	724918..725496	+	192	145591050	-	Pars_0814	-	class II aldolase/adducin family protein
785	 61.61	+1	725472..726104	+	210	145591051	-	Pars_0815	-	hypothetical protein
786	 60.78	+1	726140..727498	+	452	145591052	-	Pars_0816	-	hypothetical protein
787	 63.92	+1	727498..728664	+	388	145591053	-	Pars_0817	-	hypothetical protein
788	 61.58	+1	728661..729722	-	353	145591054	-	Pars_0818	-	radical SAM domain-containing protein
789	 54.61	0	729688..730251	-	187	145591055	-	Pars_0819	-	hypothetical protein
790	 56.23	0	730422..730814	+	130	145591056	-	Pars_0820	-	HEPN domain-containing protein
791	 58.16	0	730786..731208	+	140	145591057	-	Pars_0821	-	DNA polymerase beta subunit
792	 61.06	+1	731258..732220	-	320	145591058	-	Pars_0822	-	hypothetical protein
793	 61.30	+1	732537..733430	-	297	145591059	-	Pars_0823	-	hypothetical protein
794	 58.79	0	733469..733849	+	126	145591060	-	Pars_0824	-	hypothetical protein
795	 54.35	0	733882..734157	+	91	145591061	-	Pars_0825	-	MoaD family protein
796	 65.29	+1	734308..734742	-	144	145591062	-	Pars_0826	-	flavin reductase domain-containing protein
797	 61.03	+1	734739..735608	-	289	145591063	-	Pars_0827	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
798	 58.09	0	735680..736285	+	201	145591064	-	Pars_0828	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
799	 61.50	+1	736470..739217	+	915	145591065	-	Pars_0829	-	DEAD/DEAH box helicase domain-containing protein
800	 59.74	0	739339..739872	+	177	145591066	-	Pars_0830	-	NUDIX hydrolase
801	 57.31	0	739846..740187	-	113	145591067	-	Pars_0831	-	hypothetical protein
802	 60.98	+1	740233..741621	+	462	145591068	-	Pars_0832	-	hypothetical protein
803	 61.30	+1	741644..742258	+	204	145591069	-	Pars_0833	-	oxidoreductase, molybdopterin binding
804	 58.00	0	742278..743177	+	299	145591070	fabG	Pars_0834	-	3-ketoacyl-(acyl-carrier-protein) reductase
805	 58.14	0	743170..743427	+	85	145591071	-	Pars_0835	-	hypothetical protein
806	 56.04	0	743410..743682	-	90	145591072	-	Pars_0836	-	regulatory protein, ArsR
807	 46.78	-1	743702..743872	-	56	145591073	-	Pars_0837	-	paREP4
808	 57.88	0	743960..744619	+	219	145591074	-	Pars_0838	-	hypothetical protein
809	 62.67	+1	744674..746023	+	449	145591075	-	Pars_0839	-	phosphomethylpyrimidine kinase
810	 58.90	0	746012..746719	-	235	145591076	-	Pars_0840	-	5-formyltetrahydrofolate cyclo-ligase
811	 64.14	+1	746780..747964	+	394	145591077	-	Pars_0841	-	hypothetical protein
812	 58.08	0	747968..748840	+	290	145591078	-	Pars_0842	-	band 7 protein
813	 57.53	0	749945..750316	-	123	145591079	-	Pars_0844	-	hypothetical protein
814	 58.16	0	750405..750968	-	187	145591080	-	Pars_0845	-	hypothetical protein
815	 64.00	+1	751213..752187	-	324	145591081	-	Pars_0846	-	anthranilate synthase
816	 62.07	+1	752243..753112	-	289	145591082	-	Pars_0847	-	hypothetical protein
817	 59.56	0	753122..754177	+	351	145591083	-	Pars_0848	-	hypothetical protein
818	 59.16	0	754242..754814	-	190	145591084	-	Pars_0849	-	PaREP1 domain-containing protein
819	 60.27	0	754938..755156	-	72	145591085	-	Pars_0850	-	hypothetical protein
820	 59.01	0	755300..756070	-	256	145591086	-	Pars_0851	-	hypothetical protein
821	 57.85	0	756978..757850	-	290	145591087	-	Pars_0852	-	hypothetical protein
822	 60.47	0	757872..758807	+	311	145591088	-	Pars_0853	-	type II secretion system protein E
823	 60.31	0	758804..759589	+	261	145591089	-	Pars_0854	-	type II secretion system protein
824	 49.95	0	759725..760813	-	362	145591090	-	Pars_0855	-	AAA ATPase
825	 46.32	-1	760810..761094	-	94	145591091	-	Pars_0856	-	hypothetical protein
826	 59.22	0	761277..761894	-	205	145591092	-	Pars_0857	-	hypothetical protein
827	 57.71	0	761940..763658	-	572	145591093	-	Pars_0858	-	PaRep2b
828	 60.11	0	763785..763967	+	60	145591094	-	Pars_0859	-	hypothetical protein
829	 58.60	0	764056..764526	-	156	145591095	-	Pars_0860	-	Miro domain-containing protein
830	 57.99	0	764523..765029	-	168	145591096	-	Pars_0861	-	hypothetical protein
831	 59.63	0	765041..766006	+	321	145591097	-	Pars_0862	-	phosphoesterase, DHHA1
832	 60.28	0	765957..767615	-	552	145591098	-	Pars_0863	-	peptidase S49
833	 59.47	0	767660..768535	+	291	145591099	-	Pars_0864	-	peptidase S1 and S6, chymotrypsin/Hap
834	 60.91	+1	768532..768861	-	109	145591100	-	Pars_0865	-	cupin 2 domain-containing protein
835	 54.61	0	768858..769139	-	93	145591101	-	Pars_0866	-	putative regulatory protein
836	 63.62	+1	769199..770215	+	338	145591102	-	Pars_0867	-	N-acetyl-ornithine/N-acetyl-lysine deacetylase
837	 54.05	0	770243..771478	+	411	145591103	-	Pars_0868	-	hypothetical protein
838	 48.96	-1	771475..771762	+	95	145591104	-	Pars_0869	-	hypothetical protein
839	 53.28	0	771863..772228	+	121	145591105	-	Pars_0870	-	hypothetical protein
840	 59.84	0	772212..772826	+	204	145591106	-	Pars_0871	-	methyltransferase type 11
841	 62.17	+1	772837..773370	+	177	145591107	-	Pars_0872	-	hypothetical protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.