IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
718	 59.16	0	665936..666841	+	301	145590984	-	Pars_0748	-	hypothetical protein
719	 49.83	0	667003..667596	-	197	145590985	-	Pars_0749	-	hypothetical protein
720	 52.62	0	667568..669802	-	744	145590986	-	Pars_0750	-	hypothetical protein
721	 61.47	+1	670014..670475	-	153	145590987	-	Pars_0751	-	molybdopterin-guanine dinucleotide biosynthesis protein B
722	 52.48	0	670472..670774	-	100	145590988	-	Pars_0752	-	PadR-like family transcriptional regulator
723	 61.27	+1	670771..671826	-	351	145590989	-	Pars_0753	-	myo-inositol-1-phosphate synthase
724	 52.59	0	672336..674267	-	643	145590990	-	Pars_0754	-	hypothetical protein
725	 50.28	0	674321..674857	-	178	145590991	-	Pars_0755	-	CRISPR-associated Cas4 family protein
726	 62.42	+1	674940..676493	-	517	145590992	-	Pars_0756	-	protein synthesis factor, GTP-binding
727	 52.87	0	676527..676997	-	156	145590993	-	Pars_0757	-	hypothetical protein
728	 50.81	0	677032..677277	-	81	145590994	-	Pars_0758	-	hypothetical protein
729	 60.48	0	677253..677834	-	193	145590995	-	Pars_0759	-	hypothetical protein
730	 63.13	+1	678062..678655	+	197	145590996	-	Pars_0760	-	hypothetical protein
731	 56.52	0	678684..679097	+	137	145590997	-	Pars_0761	-	hypothetical protein
732	 58.37	0	679248..681404	-	718	145590998	hppA	Pars_0762	-	membrane-bound proton-translocating pyrophosphatase
733	 56.57	0	681506..683803	+	765	145590999	-	Pars_0763	-	V-type ATPase, 116 kDa subunit
734	 55.36	0	683803..684474	+	223	145591000	-	Pars_0764	-	hypothetical protein
735	 51.48	0	684514..685428	+	304	145591001	-	Pars_0765	-	hypothetical protein
736	 54.24	0	685382..685735	-	117	145591002	-	Pars_0766	-	hypothetical protein
737	 51.48	0	685738..685974	-	78	145591003	-	Pars_0767	-	hypothetical protein
738	 55.41	0	685961..686182	-	73	145591004	-	Pars_0768	-	ribosomal protein L29
739	 55.31	0	686212..686880	-	222	145591005	rps3p	Pars_0769	-	30S ribosomal protein S3P
740	 55.56	0	687024..687581	-	185	145591006	rpl22p	Pars_0770	-	50S ribosomal protein L22P
741	 55.23	0	687630..688967	-	445	145591007	-	Pars_0771	-	hypothetical protein
742	 60.98	+1	689013..689663	-	216	145591008	-	Pars_0772	-	ERCC4 domain-containing protein
743	 56.27	0	689689..690063	-	124	145591009	rps17p	Pars_0773	-	30S ribosomal protein S17P
744	 57.29	0	690131..690610	-	159	145591010	rps19p	Pars_0774	-	30S ribosomal protein S19P
745	 57.19	0	690735..691652	+	305	145591011	-	Pars_0775	-	hypothetical protein
746	 56.11	0	691728..692693	+	321	145591012	-	Pars_0776	-	thioredoxin-disulfide reductase
747	 59.52	0	692700..693566	-	288	145591013	-	Pars_0777	-	hypothetical protein
748	 55.41	0	694432..694662	-	76	145591014	-	Pars_0778	-	phosphoesterase
749	 48.56	-1	694909..696510	-	533	145591015	-	Pars_0779	-	hypothetical protein
750	 60.13	0	697335..698696	-	453	145591016	-	Pars_0780	-	2-methylcitrate dehydratase
751	 58.76	0	698680..699615	-	311	145591017	-	Pars_0781	-	methylisocitrate lyase
752	 62.71	+1	699758..700288	+	176	145591018	-	Pars_0782	-	cobalamin adenosyltransferase
753	 54.90	0	700408..700611	+	67	145591019	-	Pars_0783	-	ribosomal protein L38
754	 59.70	0	700645..700974	+	109	145591020	rpl12p	Pars_0784	-	50S ribosomal protein L12P
755	 41.48	-2	700963..701649	-	228	145591021	-	Pars_0785	-	hypothetical protein
756	 58.12	0	701698..702270	+	190	145591022	-	Pars_0786	-	hypothetical protein
757	 51.89	0	702419..702736	+	105	145591023	-	Pars_0787	-	hypothetical protein
758	 54.63	0	702836..703807	-	323	145591024	-	Pars_0788	-	sodium/calcium exchanger membrane region
759	 54.93	0	703894..704370	-	158	145591025	-	Pars_0789	-	ThiJ/PfpI domain-containing protein
760	 53.45	0	705262..705594	+	110	145591026	-	Pars_0790	-	30S ribosomal protein S25e
761	 59.02	0	705591..706205	-	204	145591027	-	Pars_0791	-	hypothetical protein
762	 39.52	-2	706234..706524	-	96	145591028	-	Pars_0792	-	hypothetical protein
763	 58.57	0	706517..707566	-	349	145591029	-	Pars_0793	-	hypothetical protein
764	 55.47	0	707563..707964	-	133	145591030	-	Pars_0794	-	hypothetical protein
765	 57.84	0	707997..709106	-	369	145591031	-	Pars_0795	-	acetyl-CoA C-acyltransferase
766	 59.65	0	709135..710331	+	398	145591032	-	Pars_0796	-	3-hydroxy-3-methylglutaryl coenzyme A reductase
767	 43.80	-2	710324..710734	-	136	145591033	-	Pars_0797	-	hypothetical protein
768	 54.64	0	710824..713385	+	853	145591034	-	Pars_0798	-	DNA polymerase I
769	 59.81	0	713377..713799	-	140	145591035	-	Pars_0799	-	hypothetical protein
770	 61.73	+1	713813..714379	-	188	145591036	-	Pars_0800	-	CDP-alcohol phosphatidyltransferase
771	 53.00	0	714397..714879	-	160	145591037	-	Pars_0801	-	hypothetical protein
772	 51.85	0	714876..715172	-	98	145591038	-	Pars_0802	-	30S ribosomal protein S26e
773	 56.78	0	715217..716683	-	488	145591039	-	Pars_0803	-	prolyl-tRNA synthetase
774	 64.19	+1	716729..717496	-	255	145591040	-	Pars_0804	-	beta-aspartate methyltransferase, conjectural
775	 59.26	0	717515..718000	-	161	145591041	-	Pars_0805	-	hypothetical protein
776	 56.60	0	718146..718751	+	201	145591042	-	Pars_0806	-	transcription factor
777	 59.15	0	718748..719239	+	163	145591043	-	Pars_0807	-	hypothetical protein
778	 59.20	0	719285..719686	+	133	145591044	-	Pars_0808	-	holliday junction resolvase
779	 57.08	0	719707..719946	+	79	145591045	-	Pars_0809	-	hypothetical protein
780	 59.14	0	719995..720672	+	225	145591046	-	Pars_0810	-	beta-lactamase domain-containing protein
781	 60.35	0	720705..722066	+	453	145591047	-	Pars_0811	-	geranylgeranyl reductase
782	 54.15	0	722128..724380	+	750	145591048	-	Pars_0812	-	hypothetical protein
783	 55.94	0	724367..724888	+	173	145591049	-	Pars_0813	-	hypothetical protein
784	 65.80	+1	724918..725496	+	192	145591050	-	Pars_0814	-	class II aldolase/adducin family protein
785	 61.61	+1	725472..726104	+	210	145591051	-	Pars_0815	-	hypothetical protein
786	 60.78	+1	726140..727498	+	452	145591052	-	Pars_0816	-	hypothetical protein
787	 63.92	+1	727498..728664	+	388	145591053	-	Pars_0817	-	hypothetical protein
788	 61.58	+1	728661..729722	-	353	145591054	-	Pars_0818	-	radical SAM domain-containing protein
789	 54.61	0	729688..730251	-	187	145591055	-	Pars_0819	-	hypothetical protein
790	 56.23	0	730422..730814	+	130	145591056	-	Pars_0820	-	HEPN domain-containing protein
791	 58.16	0	730786..731208	+	140	145591057	-	Pars_0821	-	DNA polymerase beta subunit
792	 61.06	+1	731258..732220	-	320	145591058	-	Pars_0822	-	hypothetical protein
793	 61.30	+1	732537..733430	-	297	145591059	-	Pars_0823	-	hypothetical protein
794	 58.79	0	733469..733849	+	126	145591060	-	Pars_0824	-	hypothetical protein
795	 54.35	0	733882..734157	+	91	145591061	-	Pars_0825	-	MoaD family protein
796	 65.29	+1	734308..734742	-	144	145591062	-	Pars_0826	-	flavin reductase domain-containing protein
797	 61.03	+1	734739..735608	-	289	145591063	-	Pars_0827	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
798	 58.09	0	735680..736285	+	201	145591064	-	Pars_0828	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
799	 61.50	+1	736470..739217	+	915	145591065	-	Pars_0829	-	DEAD/DEAH box helicase domain-containing protein
800	 59.74	0	739339..739872	+	177	145591066	-	Pars_0830	-	NUDIX hydrolase
801	 57.31	0	739846..740187	-	113	145591067	-	Pars_0831	-	hypothetical protein
802	 60.98	+1	740233..741621	+	462	145591068	-	Pars_0832	-	hypothetical protein
803	 61.30	+1	741644..742258	+	204	145591069	-	Pars_0833	-	oxidoreductase, molybdopterin binding
804	 58.00	0	742278..743177	+	299	145591070	fabG	Pars_0834	-	3-ketoacyl-(acyl-carrier-protein) reductase
805	 58.14	0	743170..743427	+	85	145591071	-	Pars_0835	-	hypothetical protein
806	 56.04	0	743410..743682	-	90	145591072	-	Pars_0836	-	regulatory protein, ArsR
807	 46.78	-1	743702..743872	-	56	145591073	-	Pars_0837	-	paREP4
808	 57.88	0	743960..744619	+	219	145591074	-	Pars_0838	-	hypothetical protein
809	 62.67	+1	744674..746023	+	449	145591075	-	Pars_0839	-	phosphomethylpyrimidine kinase
810	 58.90	0	746012..746719	-	235	145591076	-	Pars_0840	-	5-formyltetrahydrofolate cyclo-ligase
811	 64.14	+1	746780..747964	+	394	145591077	-	Pars_0841	-	hypothetical protein
812	 58.08	0	747968..748840	+	290	145591078	-	Pars_0842	-	band 7 protein
813	 57.53	0	749945..750316	-	123	145591079	-	Pars_0844	-	hypothetical protein
814	 58.16	0	750405..750968	-	187	145591080	-	Pars_0845	-	hypothetical protein
815	 64.00	+1	751213..752187	-	324	145591081	-	Pars_0846	-	anthranilate synthase
816	 62.07	+1	752243..753112	-	289	145591082	-	Pars_0847	-	hypothetical protein
817	 59.56	0	753122..754177	+	351	145591083	-	Pars_0848	-	hypothetical protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.