IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
684	 59.57	0	635657..636079	+	140	145590950	-	Pars_0714	-	antibiotic resistance (efflux) protein, conjectural
685	 65.15	+1	636076..636273	+	65	145590951	-	Pars_0715	-	hypothetical protein
686	 60.57	+1	636311..636589	+	92	145590952	-	Pars_0716	-	hypothetical protein
687	 49.85	0	636827..637165	+	112	145590953	-	Pars_0717	-	HEPN domain-containing protein
688	 58.70	0	637156..637494	+	112	145590954	-	Pars_0718	-	DNA polymerase beta subunit
689	 54.04	0	637626..638195	-	189	145590955	-	Pars_0719	-	hypothetical protein
690	 48.89	-1	638242..638511	-	89	145590956	-	Pars_0720	-	hypothetical protein
691	 48.03	-1	638553..638933	-	126	145590957	-	Pars_0721	-	hypothetical protein
692	 51.71	0	639039..639593	-	184	145590958	-	Pars_0722	-	hypothetical protein
693	 58.22	0	639731..640630	-	299	145590959	-	Pars_0723	-	alpha-L-glutamate ligase
694	 51.98	0	640765..642330	-	521	145590960	-	Pars_0724	-	hypothetical protein
695	 60.27	0	642489..643082	-	197	145590961	-	Pars_0725	-	hypothetical protein
696	 57.14	0	643111..644580	-	489	145590962	-	Pars_0726	-	FeS assembly protein SufB
697	 48.95	-1	644598..645500	-	300	145590963	-	Pars_0727	-	hypothetical protein
698	 48.91	-1	645491..645811	-	106	145590964	-	Pars_0728	-	hypothetical protein
699	 53.60	0	645992..646519	+	175	145590965	-	Pars_0729	-	ZPR1-like zinc finger protein
700	 56.44	0	646511..647038	-	175	145590966	-	Pars_0730	-	metal dependent phosphohydrolase
701	 60.70	+1	647035..648291	-	418	145590967	-	Pars_0731	-	glutamyl-tRNA(Gln) amidotransferase subunit D
702	 61.30	+1	648284..650164	-	626	145590968	-	Pars_0732	-	peptidase S9 prolyl oligopeptidase
703	 60.26	0	650193..650645	-	150	145590969	-	Pars_0733	-	hypothetical protein
704	 55.03	0	650948..654016	-	1022	145590970	-	Pars_0734	-	glycoside hydrolase family protein
705	 60.09	0	654165..654377	-	70	145590971	-	Pars_0735	-	hypothetical protein
706	 60.81	+1	654400..655731	-	443	145590972	-	Pars_0736	-	ATPase
707	 54.40	0	656117..656956	+	279	145590973	-	Pars_0737	-	TM helix repeat-containing protein
708	 56.13	0	657004..657468	+	154	145590974	-	Pars_0738	-	hypothetical protein
709	 60.17	0	657519..658211	-	230	145590975	-	Pars_0739	-	hydrolase
710	 63.41	+1	658196..659023	-	275	145590976	-	Pars_0740	-	UbiA prenyltransferase
711	 60.91	+1	659114..660190	-	358	145590977	-	Pars_0741	-	glycoside hydrolase family protein
712	 54.23	0	660187..660612	-	141	145590978	-	Pars_0742	-	UspA domain-containing protein
713	 58.74	0	660605..661639	-	344	145590979	-	Pars_0743	-	glyceraldehyde-3-phosphate dehydrogenase
714	 52.91	0	661636..662871	-	411	145590980	-	Pars_0744	-	phosphoglycerate kinase
715	 49.65	-1	662978..663553	+	191	145590981	-	Pars_0745	-	hypothetical protein
716	 58.68	0	663582..665408	+	608	145590982	-	Pars_0746	-	threonyl-tRNA synthetase
717	 55.22	0	665499..665900	+	133	145590983	-	Pars_0747	-	S-adenosylmethionine decarboxylase proenzyme
718	 59.16	0	665936..666841	+	301	145590984	-	Pars_0748	-	hypothetical protein
719	 49.83	0	667003..667596	-	197	145590985	-	Pars_0749	-	hypothetical protein
720	 52.62	0	667568..669802	-	744	145590986	-	Pars_0750	-	hypothetical protein
721	 61.47	+1	670014..670475	-	153	145590987	-	Pars_0751	-	molybdopterin-guanine dinucleotide biosynthesis protein B
722	 52.48	0	670472..670774	-	100	145590988	-	Pars_0752	-	PadR-like family transcriptional regulator
723	 61.27	+1	670771..671826	-	351	145590989	-	Pars_0753	-	myo-inositol-1-phosphate synthase
724	 52.59	0	672336..674267	-	643	145590990	-	Pars_0754	-	hypothetical protein
725	 50.28	0	674321..674857	-	178	145590991	-	Pars_0755	-	CRISPR-associated Cas4 family protein
726	 62.42	+1	674940..676493	-	517	145590992	-	Pars_0756	-	protein synthesis factor, GTP-binding
727	 52.87	0	676527..676997	-	156	145590993	-	Pars_0757	-	hypothetical protein
728	 50.81	0	677032..677277	-	81	145590994	-	Pars_0758	-	hypothetical protein
729	 60.48	0	677253..677834	-	193	145590995	-	Pars_0759	-	hypothetical protein
730	 63.13	+1	678062..678655	+	197	145590996	-	Pars_0760	-	hypothetical protein
731	 56.52	0	678684..679097	+	137	145590997	-	Pars_0761	-	hypothetical protein
732	 58.37	0	679248..681404	-	718	145590998	hppA	Pars_0762	-	membrane-bound proton-translocating pyrophosphatase
733	 56.57	0	681506..683803	+	765	145590999	-	Pars_0763	-	V-type ATPase, 116 kDa subunit
734	 55.36	0	683803..684474	+	223	145591000	-	Pars_0764	-	hypothetical protein
735	 51.48	0	684514..685428	+	304	145591001	-	Pars_0765	-	hypothetical protein
736	 54.24	0	685382..685735	-	117	145591002	-	Pars_0766	-	hypothetical protein
737	 51.48	0	685738..685974	-	78	145591003	-	Pars_0767	-	hypothetical protein
738	 55.41	0	685961..686182	-	73	145591004	-	Pars_0768	-	ribosomal protein L29
739	 55.31	0	686212..686880	-	222	145591005	rps3p	Pars_0769	-	30S ribosomal protein S3P
740	 55.56	0	687024..687581	-	185	145591006	rpl22p	Pars_0770	-	50S ribosomal protein L22P
741	 55.23	0	687630..688967	-	445	145591007	-	Pars_0771	-	hypothetical protein
742	 60.98	+1	689013..689663	-	216	145591008	-	Pars_0772	-	ERCC4 domain-containing protein
743	 56.27	0	689689..690063	-	124	145591009	rps17p	Pars_0773	-	30S ribosomal protein S17P
744	 57.29	0	690131..690610	-	159	145591010	rps19p	Pars_0774	-	30S ribosomal protein S19P
745	 57.19	0	690735..691652	+	305	145591011	-	Pars_0775	-	hypothetical protein
746	 56.11	0	691728..692693	+	321	145591012	-	Pars_0776	-	thioredoxin-disulfide reductase
747	 59.52	0	692700..693566	-	288	145591013	-	Pars_0777	-	hypothetical protein
748	 55.41	0	694432..694662	-	76	145591014	-	Pars_0778	-	phosphoesterase
749	 48.56	-1	694909..696510	-	533	145591015	-	Pars_0779	-	hypothetical protein
750	 60.13	0	697335..698696	-	453	145591016	-	Pars_0780	-	2-methylcitrate dehydratase
751	 58.76	0	698680..699615	-	311	145591017	-	Pars_0781	-	methylisocitrate lyase
752	 62.71	+1	699758..700288	+	176	145591018	-	Pars_0782	-	cobalamin adenosyltransferase
753	 54.90	0	700408..700611	+	67	145591019	-	Pars_0783	-	ribosomal protein L38
754	 59.70	0	700645..700974	+	109	145591020	rpl12p	Pars_0784	-	50S ribosomal protein L12P
755	 41.48	-2	700963..701649	-	228	145591021	-	Pars_0785	-	hypothetical protein
756	 58.12	0	701698..702270	+	190	145591022	-	Pars_0786	-	hypothetical protein
757	 51.89	0	702419..702736	+	105	145591023	-	Pars_0787	-	hypothetical protein
758	 54.63	0	702836..703807	-	323	145591024	-	Pars_0788	-	sodium/calcium exchanger membrane region
759	 54.93	0	703894..704370	-	158	145591025	-	Pars_0789	-	ThiJ/PfpI domain-containing protein
760	 53.45	0	705262..705594	+	110	145591026	-	Pars_0790	-	30S ribosomal protein S25e
761	 59.02	0	705591..706205	-	204	145591027	-	Pars_0791	-	hypothetical protein
762	 39.52	-2	706234..706524	-	96	145591028	-	Pars_0792	-	hypothetical protein
763	 58.57	0	706517..707566	-	349	145591029	-	Pars_0793	-	hypothetical protein
764	 55.47	0	707563..707964	-	133	145591030	-	Pars_0794	-	hypothetical protein
765	 57.84	0	707997..709106	-	369	145591031	-	Pars_0795	-	acetyl-CoA C-acyltransferase
766	 59.65	0	709135..710331	+	398	145591032	-	Pars_0796	-	3-hydroxy-3-methylglutaryl coenzyme A reductase
767	 43.80	-2	710324..710734	-	136	145591033	-	Pars_0797	-	hypothetical protein
768	 54.64	0	710824..713385	+	853	145591034	-	Pars_0798	-	DNA polymerase I
769	 59.81	0	713377..713799	-	140	145591035	-	Pars_0799	-	hypothetical protein
770	 61.73	+1	713813..714379	-	188	145591036	-	Pars_0800	-	CDP-alcohol phosphatidyltransferase
771	 53.00	0	714397..714879	-	160	145591037	-	Pars_0801	-	hypothetical protein
772	 51.85	0	714876..715172	-	98	145591038	-	Pars_0802	-	30S ribosomal protein S26e
773	 56.78	0	715217..716683	-	488	145591039	-	Pars_0803	-	prolyl-tRNA synthetase
774	 64.19	+1	716729..717496	-	255	145591040	-	Pars_0804	-	beta-aspartate methyltransferase, conjectural
775	 59.26	0	717515..718000	-	161	145591041	-	Pars_0805	-	hypothetical protein
776	 56.60	0	718146..718751	+	201	145591042	-	Pars_0806	-	transcription factor
777	 59.15	0	718748..719239	+	163	145591043	-	Pars_0807	-	hypothetical protein
778	 59.20	0	719285..719686	+	133	145591044	-	Pars_0808	-	holliday junction resolvase
779	 57.08	0	719707..719946	+	79	145591045	-	Pars_0809	-	hypothetical protein
780	 59.14	0	719995..720672	+	225	145591046	-	Pars_0810	-	beta-lactamase domain-containing protein
781	 60.35	0	720705..722066	+	453	145591047	-	Pars_0811	-	geranylgeranyl reductase
782	 54.15	0	722128..724380	+	750	145591048	-	Pars_0812	-	hypothetical protein
783	 55.94	0	724367..724888	+	173	145591049	-	Pars_0813	-	hypothetical protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.