IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
608	 64.60	+1	562541..563509	+	322	145590875	-	Pars_0634	-	hypothetical protein
609	 53.06	0	563599..563745	-	48	145590876	-	Pars_0635	-	hypothetical protein
610	 55.56	0	563824..564678	+	284	145590877	-	Pars_0636	-	hypothetical protein
611	 56.22	0	564675..565277	-	200	145590878	-	Pars_0637	-	translin family protein
612	 61.61	+1	565414..566619	+	401	145590879	-	Pars_0638	-	amidase
613	 58.58	0	566601..567404	-	267	145590880	-	Pars_0639	-	beta-lactamase domain-containing protein
614	 45.19	-1	567655..568725	+	356	145590881	-	Pars_0640	-	TRAP transporter solute receptor TAXI family protein
615	 46.99	-1	569062..571119	+	685	145590882	-	Pars_0641	-	TRAP transporter, 4TM/12TM fusion protein
616	 48.57	-1	571130..572317	+	395	145590883	-	Pars_0642	-	L-carnitine dehydratase/bile acid-inducible protein F
617	 59.09	0	572644..573237	-	197	145590884	-	Pars_0643	-	ABC transporter related
618	 62.79	+1	573234..573878	-	214	145590885	-	Pars_0644	-	binding-protein-dependent transport systems inner membrane component
619	 58.31	0	573868..574872	-	334	145590886	-	Pars_0645	-	binding protein, putative
620	 56.30	0	574958..575989	+	343	145590887	-	Pars_0646	-	NADH dehydrogenase subunit H
621	 51.18	0	575989..576453	+	154	145590888	-	Pars_0647	-	NADH dehydrogenase subunit I
622	 52.35	0	576538..576963	+	141	145590889	-	Pars_0648	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
623	 53.74	0	576960..577253	+	97	145590890	-	Pars_0649	-	NADH-ubiquinone oxidoreductase, chain 4L
624	 55.21	0	577250..578680	+	476	145590891	-	Pars_0650	-	NADH dehydrogenase (quinone)
625	 58.73	0	578671..580521	+	616	145590892	-	Pars_0651	-	NADH dehydrogenase (quinone)
626	 56.80	0	580518..581753	+	411	145590893	-	Pars_0652	-	NADH/ubiquinone/plastoquinone (complex I)
627	 53.99	0	581783..582334	+	183	145590894	-	Pars_0653	-	nucleoside-diphosphate kinase
628	 46.86	-1	582326..582739	-	137	145590895	-	Pars_0654	-	hypothetical protein
629	 49.75	0	582868..583884	-	338	145590896	-	Pars_0655	-	AAA ATPase
630	 55.59	0	583961..584980	+	339	145590897	-	Pars_0656	-	dolichyl-phosphate beta-D-mannosyltransferase
631	 57.16	0	584999..586039	+	346	145590898	-	Pars_0657	-	saccharopine dehydrogenase
632	 54.76	0	586036..587295	+	419	145590899	-	Pars_0658	-	histidyl-tRNA synthetase
633	 56.52	0	587287..588183	-	298	145590900	-	Pars_0659	-	carbamate kinase
634	 55.71	0	588192..589277	-	361	145590901	-	Pars_0660	-	major facilitator transporter
635	 59.84	0	589322..589687	-	121	145590902	-	Pars_0661	-	hypothetical protein
636	 56.15	0	589721..590566	+	281	145590903	-	Pars_0662	-	hypothetical protein
637	 43.42	-2	590965..591807	+	280	145590904	-	Pars_0663	-	hypothetical protein
638	 54.90	0	592510..592662	+	50	145590905	-	Pars_0664	-	hypothetical protein
639	 49.88	0	592752..593597	-	281	145590906	-	Pars_0665	-	Sec-independent periplasmic protein translocase
640	 43.67	-2	593670..593969	+	99	145590907	-	Pars_0666	-	twin arginine-targeting protein translocase
641	 56.46	0	594175..594987	-	270	145590908	-	Pars_0667	-	hypothetical protein
642	 51.37	0	594990..595172	-	60	145590909	-	Pars_0668	-	CopG/Arc/MetJ family transcriptional regulator
643	 57.98	0	595165..596211	-	348	145590910	-	Pars_0669	-	FAD dependent oxidoreductase
644	 58.14	0	596329..597900	-	523	145590911	-	Pars_0670	-	PaRep2b
645	 55.31	0	598692..599360	-	222	145590912	-	Pars_0672	-	hypothetical protein
646	 62.00	+1	599383..600003	-	206	145590913	-	Pars_0673	-	beta-lactamase domain-containing protein
647	 62.86	+1	600033..601292	+	419	145590914	-	Pars_0674	-	cytochrome c biogenesis protein, transmembrane region
648	 62.14	+1	601337..601822	+	161	145590915	-	Pars_0675	-	dual specificity protein phosphatase
649	 56.26	0	602950..603420	-	156	145590916	-	Pars_0677	-	hypothetical protein
650	 56.35	0	603556..603972	-	138	145590917	-	Pars_0678	-	hypothetical protein
651	 48.32	-1	604021..604347	+	108	145590918	-	Pars_0679	-	hypothetical protein
652	 61.28	+1	604406..604795	+	129	145590919	-	Pars_0680	-	HEPN domain-containing protein
653	 68.35	+2	604824..605060	+	78	145590920	-	Pars_0681	-	DNA polymerase beta subunit
654	 63.04	+1	605057..606739	+	560	145590921	-	Pars_0682	-	proteinase inhibitor I4, serpin
655	 62.60	+1	606819..607064	+	81	145590922	-	Pars_0683	-	hypothetical protein
656	 59.32	0	607183..607971	+	262	145590923	-	Pars_0684	-	hypothetical protein
657	 61.45	+1	608246..609070	+	274	145590924	-	Pars_0685	-	hypothetical protein
658	 57.97	0	609042..609317	+	91	145590925	-	Pars_0686	-	hypothetical protein
659	 57.60	0	609764..610171	+	135	145590926	-	Pars_0687	-	hypothetical protein
660	 62.39	+1	610345..610695	-	116	145590927	-	Pars_0688	-	hypothetical protein
661	 57.04	0	611092..611766	-	224	145590928	-	Pars_0689	-	hypothetical protein
662	 55.48	0	611935..612828	-	297	145590929	-	Pars_0690	-	hypothetical protein
663	 60.00	0	612821..613105	-	94	145590930	-	Pars_0691	-	hypothetical protein
664	 54.19	0	613514..614026	+	170	145590931	-	Pars_0692	-	hypothetical protein
665	 40.48	-2	614007..614258	+	83	145590932	-	Pars_0693	-	hypothetical protein
666	 56.70	0	614255..614545	-	96	145590933	-	Pars_0694	-	hypothetical protein
667	 57.42	0	614642..615160	-	172	145590934	-	Pars_0695	-	hypothetical protein
668	 62.71	+1	615576..616181	+	201	145590935	-	Pars_0696	-	hypothetical protein
669	 53.38	0	616402..616875	-	157	145590936	-	Pars_0697	-	PaREP1 domain-containing protein
670	 46.51	-1	617839..618096	-	85	145590937	-	Pars_0698	-	hypothetical protein
671	 58.69	0	619807..620019	-	70	145590938	-	Pars_0702	-	hypothetical protein
672	 44.09	-2	624476..625135	-	219	154845015	-	Pars_0702a	-	homing endonuclease
673	 59.56	0	625773..626180	+	135	145590939	-	Pars_0703	-	putative transcriptional regulator
674	 62.00	+1	626201..627100	+	299	145590940	-	Pars_0704	-	hypothetical protein
675	 64.36	+1	627173..628603	+	476	145590941	-	Pars_0705	-	UbiD family decarboxylase
676	 70.16	+2	628603..629232	+	209	145590942	-	Pars_0706	-	hypothetical protein
677	 60.51	0	629292..630752	+	486	145590943	-	Pars_0707	-	lysyl-tRNA synthetase
678	 60.77	+1	630706..632247	-	513	145590944	-	Pars_0708	-	glycosyl transferase family protein
679	 59.92	0	632430..633170	+	246	145590945	-	Pars_0709	-	thymidylate synthase, flavin-dependent
680	 60.26	0	633160..634017	+	285	145590946	-	Pars_0710	-	hypothetical protein
681	 54.81	0	634113..634694	-	193	145590947	-	Pars_0711	-	50S ribosomal protein L15e
682	 56.86	0	634756..635112	+	118	145590948	-	Pars_0712	-	hypothetical protein
683	 64.60	+1	635096..635626	+	176	145590949	-	Pars_0713	-	hypothetical protein
684	 59.57	0	635657..636079	+	140	145590950	-	Pars_0714	-	antibiotic resistance (efflux) protein, conjectural
685	 65.15	+1	636076..636273	+	65	145590951	-	Pars_0715	-	hypothetical protein
686	 60.57	+1	636311..636589	+	92	145590952	-	Pars_0716	-	hypothetical protein
687	 49.85	0	636827..637165	+	112	145590953	-	Pars_0717	-	HEPN domain-containing protein
688	 58.70	0	637156..637494	+	112	145590954	-	Pars_0718	-	DNA polymerase beta subunit
689	 54.04	0	637626..638195	-	189	145590955	-	Pars_0719	-	hypothetical protein
690	 48.89	-1	638242..638511	-	89	145590956	-	Pars_0720	-	hypothetical protein
691	 48.03	-1	638553..638933	-	126	145590957	-	Pars_0721	-	hypothetical protein
692	 51.71	0	639039..639593	-	184	145590958	-	Pars_0722	-	hypothetical protein
693	 58.22	0	639731..640630	-	299	145590959	-	Pars_0723	-	alpha-L-glutamate ligase
694	 51.98	0	640765..642330	-	521	145590960	-	Pars_0724	-	hypothetical protein
695	 60.27	0	642489..643082	-	197	145590961	-	Pars_0725	-	hypothetical protein
696	 57.14	0	643111..644580	-	489	145590962	-	Pars_0726	-	FeS assembly protein SufB
697	 48.95	-1	644598..645500	-	300	145590963	-	Pars_0727	-	hypothetical protein
698	 48.91	-1	645491..645811	-	106	145590964	-	Pars_0728	-	hypothetical protein
699	 53.60	0	645992..646519	+	175	145590965	-	Pars_0729	-	ZPR1-like zinc finger protein
700	 56.44	0	646511..647038	-	175	145590966	-	Pars_0730	-	metal dependent phosphohydrolase
701	 60.70	+1	647035..648291	-	418	145590967	-	Pars_0731	-	glutamyl-tRNA(Gln) amidotransferase subunit D
702	 61.30	+1	648284..650164	-	626	145590968	-	Pars_0732	-	peptidase S9 prolyl oligopeptidase
703	 60.26	0	650193..650645	-	150	145590969	-	Pars_0733	-	hypothetical protein
704	 55.03	0	650948..654016	-	1022	145590970	-	Pars_0734	-	glycoside hydrolase family protein
705	 60.09	0	654165..654377	-	70	145590971	-	Pars_0735	-	hypothetical protein
706	 60.81	+1	654400..655731	-	443	145590972	-	Pars_0736	-	ATPase
707	 54.40	0	656117..656956	+	279	145590973	-	Pars_0737	-	TM helix repeat-containing protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.