IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.13   STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.02	0	24..695	+	223	145590268	-	Pars_0001	-	30S ribosomal protein S7P
2	 50.30	0	725..1714	+	329	145590269	rfc	Pars_0002	-	replication factor C small subunit
3	 49.17	-1	1715..2983	+	422	145590270	-	Pars_0003	-	replication factor C large subunit
4	 43.59	-2	2985..3296	+	103	145590271	-	Pars_0004	-	hypothetical protein
5	 46.24	-1	3361..4530	+	389	145590272	cdc6	Pars_0005	-	cell division control protein 6
6	 37.37	-2	4527..4823	+	98	145590273	-	Pars_0006	-	regulatory protein, ArsR
7	 44.34	-1	4874..5527	+	217	145590274	-	Pars_0007	-	hypothetical protein
8	 47.82	-1	5541..6596	+	351	145590275	-	Pars_0008	-	translation initiation factor IF-2B subunit alpha
9	 43.40	-2	6698..7015	+	105	145590276	-	Pars_0009	-	hypothetical protein
10	 45.50	-1	7015..8148	+	377	145590277	-	Pars_0010	-	PUA domain-containing protein
11	 48.91	-1	8407..9048	+	213	145590278	-	Pars_0011	-	AMMECR1 domain-containing protein
12	 47.40	-1	9049..9510	-	153	145590279	-	Pars_0012	-	hypothetical protein
13	 45.16	-1	9589..9774	-	61	145590280	-	Pars_0013	-	hypothetical protein
14	 50.16	0	9814..11097	-	427	145590281	-	Pars_0014	-	hypothetical protein
15	 50.19	0	11097..11885	-	262	145590282	-	Pars_0015	-	band 7 protein
16	 35.53	-2	12100..12417	+	105	145590283	-	Pars_0016	-	hypothetical protein
17	 44.41	-1	12414..13442	+	342	145590284	-	Pars_0017	-	H+-transporting ATP synthase subunit C
18	 52.81	0	13444..13710	-	88	145590285	-	Pars_0018	-	H+-transporting two-sector ATPase, C subunit
19	 24.85	-2	13717..13881	-	54	145590286	-	Pars_0019	-	hypothetical protein
20	 45.17	-1	13905..14504	-	199	145590287	-	Pars_0020	-	V-type ATPase, D subunit
21	 49.36	-1	14542..15327	+	261	145590288	-	Pars_0021	-	GTP-binding protein, HSR1-related
22	 47.89	-1	15350..15823	+	157	145590289	-	Pars_0022	-	hypothetical protein
23	 48.75	-1	15925..16482	-	185	145590290	-	Pars_0023	-	hypothetical protein
24	 50.50	0	16600..18003	+	467	145590291	-	Pars_0024	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
25	 54.78	0	17988..19274	-	428	145590292	-	Pars_0025	-	phosphomannomutase
26	 54.57	0	19392..20507	+	371	145590293	-	Pars_0026	-	hypothetical protein
27	 50.67	0	20504..21103	-	199	145590294	-	Pars_0027	-	orotidine 5'-phosphate decarboxylase
28	 52.07	0	21321..22238	+	305	145590295	pyrB	Pars_0028	-	aspartate carbamoyltransferase catalytic subunit
29	 50.09	0	22235..22765	+	176	145590296	-	Pars_0029	-	ribosomal-protein-alanine acetyltransferase
30	 52.99	0	22809..24329	+	506	145590297	-	Pars_0030	-	hypothetical protein
31	 52.12	0	24477..25961	+	494	145590298	-	Pars_0031	-	type II secretion system protein E
32	 44.25	-2	26341..26853	+	170	145590299	-	Pars_0032	-	hypothetical protein
33	 47.78	-1	26880..28367	+	495	145590300	-	Pars_0033	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
34	 49.37	-1	28356..29072	-	238	145590301	-	Pars_0034	-	hypothetical protein
35	 42.69	-2	29069..29581	-	170	145590302	-	Pars_0035	-	transcription factor TFIIE, alpha subunit
36	 50.61	0	29639..30784	-	381	145590303	-	Pars_0036	-	small GTP-binding protein
37	 58.23	0	30774..31259	-	161	145590304	-	Pars_0037	-	helix-turn-helix domain-containing protein
38	 50.00	0	31265..31756	+	163	145590305	-	Pars_0038	-	PUA domain-containing protein
39	 51.25	0	31725..32003	-	92	145590306	-	Pars_0039	-	hypothetical protein
40	 49.66	-1	31987..32280	-	97	145590307	-	Pars_0040	-	hypothetical protein
41	 46.50	-1	32360..32602	+	80	145590308	-	Pars_0041	-	like-Sm ribonucleoprotein, core
42	 50.94	0	32599..32757	+	52	145590309	rpl37e	Pars_0042	-	50S ribosomal protein L37e
43	 52.12	0	32838..33428	+	196	145590310	-	Pars_0043	-	multiple antibiotic resistance (MarC)-related protein
44	 53.40	0	33452..34378	+	308	145590311	-	Pars_0044	-	hypothetical protein
45	 53.65	0	34375..34758	-	127	145590312	-	Pars_0045	-	cytidine deaminase
46	 48.77	-1	34796..35728	+	310	145590313	-	Pars_0046	-	hypothetical protein
47	 55.04	0	35752..36534	+	260	145590314	-	Pars_0047	-	short-chain dehydrogenase/reductase SDR
48	 56.20	0	36523..37812	-	429	145590315	glyA	Pars_0048	-	serine hydroxymethyltransferase
49	 54.51	0	37851..38582	-	243	145590316	-	Pars_0049	-	molybdenum cofactor biosynthesis protein (moaC)
50	 49.09	-1	38579..38908	-	109	145590317	-	Pars_0050	-	hypothetical protein
51	 54.77	0	38939..39997	-	352	145590318	-	Pars_0051	-	isopentenyl pyrophosphate isomerase
52	 59.65	0	39997..40737	-	246	145590319	rpl2p	Pars_0052	-	50S ribosomal protein L2P
53	 46.30	-1	40871..41086	+	71	145590320	rps17E	Pars_0053	-	30S ribosomal protein S17e
54	 55.07	0	41089..41778	+	229	145590321	-	Pars_0054	-	peptidylprolyl isomerase, FKBP-type
55	 49.92	0	41882..42490	+	202	145590322	-	Pars_0055	-	proteasome endopeptidase complex
56	 54.52	0	42511..43770	+	419	145590323	-	Pars_0056	-	phosphopyruvate hydratase
57	 46.14	-1	43801..44214	+	137	145590324	-	Pars_0057	-	ModE family transcriptional regulator
58	 50.16	0	44199..45131	-	310	145590325	-	Pars_0058	-	putative molybdenum cofactor biosynthesis protein A
59	 49.30	-1	45588..46664	+	358	145590326	-	Pars_0059	-	protein kinase
60	 50.57	0	46684..47211	+	175	145590327	-	Pars_0060	-	FHA domain-containing protein
61	 51.04	0	47247..47873	+	208	145590328	rps2P	Pars_0061	-	30S ribosomal protein S2
62	 51.54	0	47928..48773	+	281	145590329	-	Pars_0062	-	hypothetical protein
63	 52.74	0	48770..50119	-	449	145590330	-	Pars_0063	-	pyruvate kinase
64	 51.52	0	50116..52023	-	635	145590331	-	Pars_0064	-	beta-lactamase domain-containing protein
65	 59.26	0	52072..53502	+	476	145590332	-	Pars_0065	-	cysteinyl-tRNA synthetase
66	 52.86	0	54516..54899	-	127	145590333	-	Pars_0068	-	hypothetical protein
67	 64.14	+1	55169..55405	+	78	145590334	-	Pars_0069	-	hypothetical protein
68	 52.78	0	55467..59045	-	1192	145590335	-	Pars_0070	-	hypothetical protein
69	 49.97	0	59049..61013	+	654	145590336	-	Pars_0071	-	hypothetical protein
70	 51.20	0	61054..69057	+	2667	145590337	-	Pars_0072	-	hypothetical protein
71	 55.11	0	69117..69713	+	198	145590338	-	Pars_0073	-	hypothetical protein
72	 61.98	+1	69743..70510	+	255	145590339	-	Pars_0074	-	hypothetical protein
73	 53.11	0	70491..71021	+	176	145590340	-	Pars_0075	-	putative adenylyl cyclase CyaB
74	 58.06	0	71029..72783	+	584	145590341	-	Pars_0076	-	ATP-dependent DNA ligase
75	 54.19	0	72771..73259	-	162	145590342	-	Pars_0077	-	hypothetical protein
76	 56.99	0	73337..74245	+	302	145590343	-	Pars_0078	-	ribokinase-like domain-containing protein
77	 50.00	0	74268..74603	+	111	145590344	-	Pars_0079	-	hypothetical protein
78	 52.65	0	74600..75277	+	225	145590345	-	Pars_0080	-	nucleotidyl transferase
79	 53.75	0	75309..76028	+	239	145590346	-	Pars_0081	-	hypothetical protein
80	 48.11	-1	76025..76579	+	184	145590347	-	Pars_0082	-	hypothetical protein
81	 57.65	0	76563..76928	-	121	145590348	-	Pars_0083	-	hypothetical protein
82	 56.59	0	76955..78016	+	353	145590349	-	Pars_0084	-	hypothetical protein
83	 47.40	-1	78797..79123	-	108	145590350	-	Pars_0085	-	hypothetical protein
84	 55.26	0	79428..80330	-	300	145590351	-	Pars_0086	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
85	 51.74	0	80332..80733	-	133	145590352	-	Pars_0087	-	hypothetical protein
86	 48.72	-1	81058..81369	+	103	145590353	-	Pars_0088	-	50S ribosomal protein L14e
87	 56.12	0	81366..82361	+	331	145590354	-	Pars_0089	-	H/ACA RNA-protein complex component Cbf5p
88	 53.06	0	82385..82678	+	97	145590355	-	Pars_0090	-	hypothetical protein
89	 54.14	0	82675..83169	+	164	145590356	-	Pars_0091	-	hypothetical protein
90	 48.80	-1	83190..83648	+	152	145590357	-	Pars_0092	-	hypothetical protein
91	 53.59	0	83645..84577	+	310	145590358	-	Pars_0093	-	oxidoreductase domain-containing protein
92	 50.09	0	84632..85174	+	180	145590359	-	Pars_0094	-	hypothetical protein
93	 54.12	0	85228..85713	+	161	145590360	-	Pars_0095	-	hypothetical protein
94	 56.14	0	85703..86500	-	265	145590361	-	Pars_0096	-	competence damage-inducible protein A
95	 57.49	0	86510..87370	-	286	145590362	-	Pars_0097	-	hypothetical protein
96	 51.45	0	87429..87842	+	137	145590363	-	Pars_0098	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
97	 53.85	0	87839..88072	+	77	145590364	-	Pars_0099	-	hypothetical protein
98	 55.64	0	88041..88430	-	129	145590365	-	Pars_0100	-	hypothetical protein
99	 52.21	0	88515..89171	-	218	145590366	-	Pars_0101	-	HhH-GPD family protein
100	 51.20	0	89217..89714	+	165	145590367	-	Pars_0102	-	hypothetical protein
55.13	MEAN

5.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.