IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.13   STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
324	 62.25	+1	285857..286105	+	82	145590591	-	Pars_0330	-	hypothetical protein
325	 54.31	0	286461..286727	+	88	145590592	-	Pars_0331	-	hypothetical protein
326	 55.13	0	286769..286924	+	51	145590593	-	Pars_0332	-	hypothetical protein
327	 60.63	+1	286953..287963	+	336	145590594	-	Pars_0333	-	hypothetical protein
328	 61.80	+1	288003..288557	+	184	145590595	-	Pars_0334	-	PaREP1 domain-containing protein
329	 54.88	0	289090..289386	+	98	145590596	-	Pars_0335	-	hypothetical protein
330	 58.51	0	289881..290885	+	334	145590597	-	Pars_0336	-	hypothetical protein
331	 64.66	+1	291019..292365	+	448	145590598	-	Pars_0337	-	hypothetical protein
332	 66.22	+2	292422..292871	-	149	145590599	-	Pars_0338	-	membrane protein-like protein
333	 64.86	+1	293033..293809	+	258	145590600	-	Pars_0339	-	hypothetical protein
334	 63.78	+1	293852..294751	+	299	145590601	-	Pars_0340	-	NAD-dependent epimerase/dehydratase
335	 58.31	0	294772..295680	+	302	145590602	-	Pars_0341	-	glycosyl transferase family protein
336	 57.08	0	297252..297470	-	72	145590603	-	Pars_0343	-	hypothetical protein
337	 59.73	0	297553..298806	+	417	145590604	-	Pars_0344	-	type I phosphodiesterase/nucleotide pyrophosphatase
338	 61.95	+1	298803..299396	+	197	145590605	-	Pars_0345	-	adenylyl-sulfate kinase
339	 55.98	0	299726..299959	+	77	145590606	-	Pars_0348	-	hypothetical protein
340	 61.21	+1	300162..300692	+	176	145590607	-	Pars_0349	-	hypothetical protein
341	 61.90	+1	301199..301366	+	55	145590608	-	Pars_0350	-	hypothetical protein
342	 54.05	0	301359..302618	+	419	145590609	-	Pars_0351	-	sulfatase
343	 59.84	0	302844..303341	+	165	145590610	-	Pars_0353	-	dTDP-4-dehydrorhamnose 3,5-epimerase
344	 52.27	0	303587..304225	-	212	145590611	-	Pars_0354	-	hypothetical protein
345	 38.89	-2	305868..307055	-	395	145590612	-	Pars_0356	-	glycosyl transferase, group 1
346	 45.57	-1	307117..308244	-	375	145590613	-	Pars_0357	-	glycosyl transferase, group 1
347	 45.17	-1	308325..309152	-	275	145590614	-	Pars_0358	-	glycosyl transferase family protein
348	 28.13	-2	310082..310408	+	108	145590615	-	Pars_0360	-	hypothetical protein
349	 63.38	+1	311458..312522	-	354	145590616	-	Pars_0361	-	glycosyl transferase, group 1
350	 49.68	-1	312632..313726	-	364	145590617	-	Pars_0362	-	glycosyl transferase family protein
351	 61.80	+1	313884..314438	-	184	145590618	-	Pars_0363	-	PaREP1 domain-containing protein
352	 63.57	+1	314595..315629	-	344	145590619	-	Pars_0364	-	hypothetical protein
353	 45.59	-1	315642..316196	-	184	145590620	-	Pars_0365	-	hypothetical protein
354	 60.00	0	316430..316789	-	119	145590621	-	Pars_0366	-	hypothetical protein
355	 65.02	+1	316927..317169	+	80	145590622	-	Pars_0367	-	hypothetical protein
356	 61.19	+1	317412..317831	+	139	145590623	-	Pars_0368	-	hypothetical protein
357	 58.65	0	318044..318592	-	182	145590624	-	Pars_0369	-	PaREP1 domain-containing protein
358	 56.12	0	318823..319116	+	97	145590625	-	Pars_0370	-	AbrB family transcriptional regulator
359	 55.31	0	319157..319561	+	134	145590626	-	Pars_0371	-	hypothetical protein
360	 60.82	+1	319680..320243	-	187	145590627	-	Pars_0372	-	PaREP1 domain-containing protein
361	 66.67	+2	322235..322444	+	69	145590628	-	Pars_0374	-	hypothetical protein
362	 59.36	0	323340..324626	+	428	145590629	-	Pars_0375	-	hypothetical protein
363	 49.44	-1	324749..325828	+	359	145590630	-	Pars_0376	-	glycosyl transferase, group 1
364	 50.98	0	325809..326987	-	392	145590631	-	Pars_0377	-	glycosyl transferase, group 1
365	 50.75	0	328300..329235	+	311	145590632	-	Pars_0380	-	glycosyl transferase family protein
366	 58.74	0	329288..330523	+	411	145590633	-	Pars_0381	-	glycosyl transferase, group 1
367	 61.64	+1	330915..332624	+	569	145590634	-	Pars_0382	-	peptidase S9 prolyl oligopeptidase
368	 59.49	0	332660..333802	+	380	145590635	-	Pars_0383	-	radical SAM domain-containing protein
369	 57.09	0	333848..334933	+	361	145590636	-	Pars_0384	-	ATPase
370	 50.34	0	335062..335496	+	144	145590637	-	Pars_0385	-	hypothetical protein
371	 43.91	-2	335483..335983	+	166	145590638	-	Pars_0386	-	hypothetical protein
372	 55.40	0	336124..336771	+	215	145590639	-	Pars_0387	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
373	 50.59	0	336768..337874	+	368	145590640	-	Pars_0388	-	hypothetical protein
374	 53.04	0	337867..341388	+	1173	145590641	-	Pars_0389	-	molydopterin dinucleotide-binding region
375	 51.70	0	341782..342369	+	195	145590642	-	Pars_0390	-	hypothetical protein
376	 58.75	0	342398..343003	+	201	145590643	-	Pars_0391	-	lysine exporter protein LysE/YggA
377	 50.95	0	343504..343923	-	139	145590644	-	Pars_0392	-	PilT domain-containing protein
378	 45.27	-1	343907..344149	-	80	145590645	-	Pars_0393	-	AbrB family transcriptional regulator
379	 59.37	0	344178..345410	+	410	145590646	-	Pars_0394	-	hypothetical protein
380	 53.14	0	346203..346616	+	137	145590647	-	Pars_0395	-	Fis family transcriptional regulator
381	 55.34	0	346613..347671	+	352	145590648	-	Pars_0396	-	alcohol dehydrogenase
382	 53.83	0	348060..349181	+	373	145590649	-	Pars_0397	-	hypothetical protein
383	 54.17	0	349217..349528	+	103	145590650	-	Pars_0398	-	hypothetical protein
384	 53.25	0	349583..349813	+	76	145590651	-	Pars_0399	-	CopG family transcriptional regulator
385	 59.37	0	349844..351310	+	488	145590652	pheS	Pars_0400	-	phenylalanyl-tRNA synthetase subunit alpha
386	 61.78	+1	351942..352166	+	74	145590653	-	Pars_0402	-	hypothetical protein
387	 59.16	0	352405..352950	+	181	145590654	-	Pars_0403	-	PaREP1 domain-containing protein
388	 57.66	0	353025..353246	-	73	145590655	-	Pars_0404	-	aspartate 1-decarboxylase
389	 55.68	0	353276..353812	+	178	145590656	-	Pars_0405	-	nicotinamide-nucleotide adenylyltransferase
390	 53.19	0	354037..354585	-	182	145590657	-	Pars_0406	-	hypothetical protein
391	 55.06	0	354588..355724	-	378	145590658	-	Pars_0407	-	acyl-CoA dehydrogenase domain-containing protein
392	 60.52	0	356595..357992	+	465	145590659	-	Pars_0409	-	phytoene dehydrogenase-related protein
393	 58.90	0	357985..358293	+	102	145590660	-	Pars_0410	-	hypothetical protein
394	 58.19	0	358296..359003	+	235	145590661	-	Pars_0411	-	hypothetical protein
395	 52.74	0	359611..360852	+	413	145590662	-	Pars_0412	-	major facilitator transporter
396	 58.76	0	360854..362800	+	648	145590663	-	Pars_0413	-	5-oxoprolinase (ATP-hydrolyzing)
397	 59.21	0	362797..364338	+	513	145590664	-	Pars_0414	-	5-oxoprolinase (ATP-hydrolyzing)
398	 42.93	-2	365860..366234	+	124	145590665	-	Pars_0416	-	hypothetical protein
399	 51.96	0	367331..367636	+	101	145590666	-	Pars_0417	-	hypothetical protein
400	 52.48	0	367817..367957	-	46	145590667	-	Pars_0418	-	hypothetical protein
401	 42.60	-2	367965..368978	-	337	145590668	-	Pars_0419	-	radical SAM domain-containing protein
402	 33.72	-2	368978..369235	-	85	145590669	-	Pars_0420	-	hypothetical protein
403	 41.49	-2	369232..369783	-	183	145590670	-	Pars_0421	-	hypothetical protein
404	 48.75	-1	369815..370294	+	159	145590671	-	Pars_0422	-	hypothetical protein
405	 62.50	+1	370291..371130	+	279	145590672	-	Pars_0423	-	abortive infection protein
406	 57.08	0	371190..371627	-	145	145590673	-	Pars_0424	-	PilT domain-containing protein
407	 58.33	0	371611..371838	-	75	145590674	-	Pars_0425	-	CopG/DNA-binding domain-containing protein
408	 62.44	+1	372113..372964	-	283	145590675	-	Pars_0426	-	hypothetical protein
409	 63.64	+1	372992..373222	-	76	145590676	-	Pars_0427	-	hypothetical protein
410	 61.46	+1	373219..373737	-	172	145590677	-	Pars_0428	-	AsnC family transcriptional regulator
411	 56.09	0	373886..374443	+	185	145590678	-	Pars_0429	-	hypothetical protein
412	 65.58	+1	374594..374869	+	91	145590679	-	Pars_0430	-	hypothetical protein
413	 56.51	0	375269..376105	+	278	145590680	-	Pars_0431	-	ABC transporter related
414	 50.20	0	376102..376842	+	246	145590681	-	Pars_0432	-	ABC-2 type transporter
415	 50.17	0	376848..377150	+	100	145590682	-	Pars_0433	-	regulatory protein, ArsR
416	 53.87	0	377153..377488	+	111	145590683	-	Pars_0434	-	hypothetical protein
417	 51.94	0	377601..378116	+	171	145590684	-	Pars_0435	-	hypothetical protein
418	 52.50	0	378118..379098	-	326	145590685	-	Pars_0436	-	Rieske (2Fe-2S) domain-containing protein
419	 58.74	0	379695..380438	-	247	145590686	-	Pars_0437	-	hypothetical protein
420	 61.87	+1	381546..381962	-	138	145590687	-	Pars_0438	-	iron dependent repressor
421	 61.83	+1	381964..383079	-	371	145590688	-	Pars_0439	-	natural resistance-associated macrophage protein
422	 59.01	0	383480..384406	-	308	145590689	-	Pars_0440	-	hypothetical protein
423	 57.27	0	385316..386635	+	439	145590690	-	Pars_0442	-	phosphate ABC transporter, periplasmic phosphate-binding protein
55.13	MEAN

5.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.