IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
218	 61.06	+1	198698..199750	+	350	145590485	-	Pars_0220	-	radical SAM domain-containing protein
219	 55.26	0	199741..200073	-	110	145590486	-	Pars_0221	-	FHA domain-containing protein
220	 55.65	0	200133..200477	+	114	145590487	-	Pars_0222	-	MazG nucleotide pyrophosphohydrolase
221	 55.45	0	200557..200859	-	100	145590488	-	Pars_0223	-	hypothetical protein
222	 54.35	0	200930..202594	+	554	145590489	-	Pars_0224	-	hypothetical protein
223	 54.23	0	202609..203364	+	251	145590490	-	Pars_0225	-	hypothetical protein
224	 60.45	0	203392..204195	+	267	145590491	-	Pars_0226	-	putative circadian clock protein, KaiC
225	 62.44	+1	204524..205138	-	204	145590492	-	Pars_0227	-	glutamine amidotransferase subunit PdxT
226	 62.82	+1	205135..206148	-	337	145590493	-	Pars_0228	-	pyridoxine biosynthesis protein
227	 56.29	0	206241..207242	-	333	145590494	-	Pars_0229	-	hypothetical protein
228	 63.99	+1	207221..207967	-	248	145590495	-	Pars_0230	-	diphthine synthase
229	 58.96	0	208021..208500	+	159	145590496	-	Pars_0231	-	hypothetical protein
230	 53.15	0	208501..209151	-	216	145590497	-	Pars_0232	-	hypothetical protein
231	 62.14	+1	209181..209954	-	257	145590498	-	Pars_0233	-	pseudouridylate synthase
232	 62.17	+1	209981..210670	+	229	145590499	-	Pars_0234	-	GCN5-related N-acetyltransferase
233	 55.56	0	210693..210971	+	92	145590500	-	Pars_0235	-	hypothetical protein
234	 61.40	+1	210972..211826	-	284	145590501	-	Pars_0236	-	6-phosphogluconate dehydrogenase, NAD-binding
235	 60.26	0	211869..213272	+	467	145590502	-	Pars_0237	-	V-type ATP synthase subunit B
236	 61.64	+1	213532..214068	+	178	145590503	-	Pars_0238	-	PaREP1 domain-containing protein
237	 58.47	0	214061..214816	+	251	145590504	-	Pars_0239	-	rhomboid family protein
238	 54.37	0	214924..215175	+	83	145590505	-	Pars_0240	-	hypothetical protein
239	 62.54	+1	215203..216123	+	306	145590506	-	Pars_0241	-	aldo/keto reductase
240	 60.27	0	216130..217317	-	395	145590507	-	Pars_0242	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
241	 61.19	+1	217365..217766	+	133	145590508	-	Pars_0243	-	hypothetical protein
242	 57.26	0	218062..218412	+	116	145590509	-	Pars_0244	-	Rieske (2Fe-2S) domain-containing protein
243	 52.31	0	219135..219329	-	64	145590510	-	Pars_0246	-	hypothetical protein
244	 60.95	+1	219385..219891	-	168	145590511	-	Pars_0247	-	hypothetical protein
245	 63.40	+1	219977..220282	-	101	145590512	-	Pars_0248	-	hypothetical protein
246	 57.62	0	220732..221118	+	128	145590513	-	Pars_0249	-	hypothetical protein
247	 53.95	0	221207..221497	+	96	145590514	-	Pars_0250	-	Rieske (2Fe-2S) domain-containing protein
248	 56.16	0	221490..221822	-	110	145590515	-	Pars_0251	-	DNA polymerase beta subunit
249	 60.77	+1	221785..222225	-	146	145590516	-	Pars_0252	-	HEPN domain-containing protein
250	 61.69	+1	222490..223272	+	260	145590517	-	Pars_0253	-	xanthine dehydrogenase accessory factor
251	 70.35	+2	223269..223757	-	162	145590518	-	Pars_0254	-	hypothetical protein
252	 66.18	+2	223730..225388	-	552	145590519	-	Pars_0255	-	DNA polymerase B region
253	 59.22	0	227200..227790	+	196	145590520	-	Pars_0257	-	hypothetical protein
254	 56.97	0	227780..228181	-	133	145590521	-	Pars_0258	-	hypothetical protein
255	 58.03	0	228289..231972	+	1227	145590522	-	Pars_0259	-	reverse gyrase
256	 60.29	0	231969..234806	-	945	145590523	leuS	Pars_0260	-	leucyl-tRNA synthetase
257	 55.86	0	234822..235367	-	181	145590524	-	Pars_0261	-	hypothetical protein
258	 56.91	0	235364..235855	-	163	145590525	-	Pars_0262	-	hypothetical protein
259	 56.67	0	235852..236211	-	119	145590526	-	Pars_0263	-	hypothetical protein
260	 41.20	-2	236375..236641	+	88	145590527	-	Pars_0264	-	regulatory protein, ArsR
261	 54.27	0	236720..237889	-	389	145590528	-	Pars_0265	-	L-carnitine dehydratase/bile acid-inducible protein F
262	 56.01	0	237886..239208	-	440	145590529	-	Pars_0266	-	L-carnitine dehydratase/bile acid-inducible protein F
263	 51.29	0	239323..240018	-	231	145590530	-	Pars_0267	-	rhomboid family protein
264	 61.04	+1	240119..241024	-	301	145590531	-	Pars_0268	-	radical SAM domain-containing protein
265	 59.90	0	241029..241796	-	255	145590532	-	Pars_0269	-	hypothetical protein
266	 64.43	+1	242038..242664	-	208	145590533	-	Pars_0270	-	metallophosphoesterase
267	 59.38	0	242692..243240	-	182	145590534	-	Pars_0271	-	hypothetical protein
268	 54.96	0	243224..245341	-	705	145590535	-	Pars_0272	-	hypothetical protein
269	 63.50	+1	245448..246047	+	199	145590536	-	Pars_0273	-	ribonuclease H
270	 60.50	0	246032..246793	-	253	145590537	-	Pars_0274	-	transposase, IS605 OrfB
271	 55.85	0	246854..247195	+	113	145590538	-	Pars_0275	-	hypothetical protein
272	 55.72	0	247200..247400	+	66	145590539	-	Pars_0276	-	hypothetical protein
273	 55.56	0	247450..247854	+	134	145590540	-	Pars_0277	-	hypothetical protein
274	 55.10	0	248005..248298	+	97	145590541	-	Pars_0278	-	translation initiation factor IF-1A
275	 51.33	0	248366..249043	+	225	145590542	-	Pars_0279	-	hypothetical protein
276	 48.51	-1	249100..249402	+	100	145590543	-	Pars_0280	-	hypothetical protein
277	 58.84	0	250143..250589	+	148	145590544	-	Pars_0281	-	hypothetical protein
278	 60.00	0	250586..251320	-	244	145590545	-	Pars_0282	-	ABC transporter related
279	 57.29	0	251311..252717	-	468	145590546	-	Pars_0283	-	binding-protein-dependent transport systems inner membrane component
280	 56.21	0	253041..253910	-	289	145590547	-	Pars_0284	-	spermine synthase
281	 56.38	0	254059..255264	-	401	145590548	-	Pars_0285	-	hypothetical protein
282	 58.61	0	255407..256312	-	301	145590549	-	Pars_0286	-	ABC-3 protein
283	 55.81	0	256314..257087	-	257	145590550	-	Pars_0287	-	ABC transporter related
284	 57.95	0	257145..257936	+	263	145590551	-	Pars_0288	-	initiation factor 2B related
285	 57.73	0	257940..258230	+	96	145590552	-	Pars_0289	-	zinc finger SWIM domain-containing protein
286	 59.52	0	258230..258565	+	111	145590553	-	Pars_0290	-	hypothetical protein
287	 54.57	0	258566..259474	-	302	145590554	-	Pars_0291	-	lysine biosynthesis enzyme LysX
288	 54.36	0	259503..259697	+	64	145590555	-	Pars_0292	-	hypothetical protein
289	 48.96	-1	259721..259912	+	63	145590556	-	Pars_0293	-	hypothetical protein
290	 48.40	-1	259972..260190	+	72	145590557	-	Pars_0294	-	hypothetical protein
291	 57.76	0	260183..260620	+	145	145590558	-	Pars_0295	-	hypothetical protein
292	 59.93	0	260670..261797	-	375	145590559	-	Pars_0296	-	hypothetical protein
293	 60.51	0	261914..262108	+	64	145590560	-	Pars_0297	-	hypothetical protein
294	 57.95	0	262138..262401	+	87	145590561	-	Pars_0298	-	hypothetical protein
295	 56.58	0	262398..262883	+	161	145590562	-	Pars_0299	-	hypothetical protein
296	 62.85	+1	263125..263412	-	95	145590563	-	Pars_0300	-	acylphosphatase
297	 61.97	+1	263695..264375	+	226	145590564	-	Pars_0301	-	deoxyribose-phosphate aldolase
298	 61.05	+1	264410..264694	+	94	145590565	-	Pars_0302	-	hypothetical protein
299	 57.39	0	265127..265471	-	114	145590566	-	Pars_0304	-	hypothetical protein
300	 57.16	0	265490..266551	-	353	145590567	-	Pars_0305	-	phospholipase D/transphosphatidylase
301	 58.03	0	266574..267071	-	165	145590568	-	Pars_0306	-	methyltransferase type 11
302	 59.95	0	267065..268210	-	381	145590569	-	Pars_0307	-	hypothetical protein
303	 51.71	0	268244..269326	+	360	145590570	-	Pars_0308	-	ABC transporter related
304	 54.25	0	269333..270556	+	407	145590571	-	Pars_0309	-	acetyl-CoA acetyltransferase
305	 55.60	0	270576..271379	+	267	145590572	-	Pars_0310	-	NAD+ synthetase
306	 51.25	0	271372..271851	+	159	145590573	-	Pars_0311	-	PadR-like family transcriptional regulator
307	 55.11	0	272044..272640	+	198	145590574	-	Pars_0312	-	ribonuclease HII
308	 53.70	0	272674..273267	+	197	145590575	rps5p	Pars_0313	-	30S ribosomal protein S5P
309	 57.63	0	273264..273794	+	176	145590576	rpl30p	Pars_0314	-	50S ribosomal protein L30P
310	 58.62	0	273775..274719	-	314	145590577	-	Pars_0315	-	galactose-1-phosphate uridylyltransferase
311	 61.02	+1	274709..275788	-	359	145590578	-	Pars_0316	-	GHMP kinase
312	 55.97	0	275773..276333	-	186	145590579	-	Pars_0317	-	peptidase M50
313	 52.27	0	276463..276726	-	87	145590580	-	Pars_0318	-	hypothetical protein
314	 52.91	0	277767..278195	+	142	145590581	-	Pars_0319	-	hypothetical protein
315	 58.77	0	278176..278580	+	134	145590582	-	Pars_0320	-	DNA polymerase beta subunit
316	 58.86	0	279685..280158	+	157	145590583	-	Pars_0321	-	PaREP1 domain-containing protein
317	 67.44	+2	280262..280519	+	85	145590584	-	Pars_0322	-	hypothetical protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.